Wall clock time and date at job start Tue Mar 9 2021 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34852 * 125.89284 * 119.68726 * 4 2 1 6 6 C 1.40890 * 107.41514 * 179.88173 * 5 4 2 7 7 C 1.34851 * 107.41918 * 0.38270 * 6 5 4 8 8 C 1.50696 * 125.88845 * 179.80541 * 7 6 5 9 9 C 1.50700 * 109.47386 * 274.95134 * 8 7 6 10 10 O 1.21287 * 119.99649 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00442 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00337 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84755 * 336.20165 * 12 11 9 14 14 C 1.53774 * 113.61621 * 107.50432 * 12 11 9 15 15 C 1.53789 * 87.07805 * 89.11732 * 14 12 11 16 16 H 1.08999 * 113.61488 * 270.88605 * 15 14 12 17 17 C 1.50703 * 113.68816 * 139.99454 * 15 14 12 18 18 N 1.30495 * 125.64807 * 167.15762 * 17 15 14 19 19 C 1.34133 * 109.25191 * 179.89156 * 18 17 15 20 20 C 1.34660 * 108.02329 * 0.36840 * 19 18 17 21 21 N 1.35046 * 125.64813 * 347.46311 * 17 15 14 22 22 C 1.53775 * 87.07977 * 25.43569 * 15 14 12 23 23 N 1.36339 * 108.21722 * 359.76349 * 7 6 5 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.07994 * 126.28638 * 0.02562 * 5 4 2 29 29 H 1.08001 * 126.28594 * 180.12879 * 6 5 4 30 30 H 1.08999 * 109.47474 * 34.95758 * 8 7 6 31 31 H 1.08997 * 109.46949 * 154.95476 * 8 7 6 32 32 H 0.97000 * 119.99988 * 0.02562 * 11 9 8 33 33 H 1.08990 * 113.61921 * 203.66422 * 14 12 11 34 34 H 1.09000 * 113.61616 * 334.57634 * 14 12 11 35 35 H 1.08007 * 125.98706 * 180.11537 * 19 18 17 36 36 H 1.08000 * 126.59555 * 179.74293 * 20 19 18 37 37 H 0.96997 * 126.40039 * 359.94092 * 21 17 15 38 38 H 1.08999 * 113.61381 * 220.01715 * 22 15 14 39 39 H 1.09002 * 113.61858 * 89.11186 * 22 15 14 40 40 H 0.97005 * 125.63344 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7050 -0.1709 -2.1943 6 6 2.9442 -1.1744 -3.1539 7 6 2.3006 -2.2863 -2.7442 8 6 2.2757 -3.6091 -3.4658 9 6 1.1824 -3.5951 -4.5029 10 8 0.4918 -2.6079 -4.6426 11 7 0.9727 -4.6790 -5.2758 12 6 -0.0898 -4.6652 -6.2844 13 1 -0.8782 -3.9471 -6.0588 14 6 0.4324 -4.5761 -7.7280 15 6 0.4800 -6.1133 -7.7221 16 1 1.4262 -6.5195 -7.3648 17 6 0.0264 -6.7380 -9.0164 18 7 0.1903 -7.9872 -9.3564 19 6 -0.3393 -8.1878 -10.5723 20 6 -0.8435 -7.0167 -11.0054 21 7 -0.6118 -6.0965 -10.0188 22 6 -0.6158 -6.0647 -6.6443 23 7 1.6772 -2.0076 -1.5642 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5877 2.4585 -1.2243 27 1 1.5613 2.4680 1.2084 28 1 3.0752 0.8432 -2.2238 29 1 3.5314 -1.0707 -4.0544 30 1 3.2365 -3.7755 -3.9529 31 1 2.0875 -4.4096 -2.7504 32 1 1.5253 -5.4684 -5.1643 33 1 -0.2926 -4.1645 -8.4300 34 1 1.4140 -4.1093 -7.8093 35 1 -0.3547 -9.1236 -11.1114 36 1 -1.3356 -6.8375 -11.9500 37 1 -0.8600 -5.1590 -10.0363 38 1 -0.4805 -6.7994 -5.8507 39 1 -1.6275 -6.0598 -7.0500 40 1 1.1410 -2.6295 -1.0476 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16970406_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:07:50 Heat of formation + Delta-G solvation = 66.930477 kcal Electronic energy + Delta-G solvation = -23577.884758 eV Core-core repulsion = 19975.864636 eV Total energy + Delta-G solvation = -3602.020121 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.12278 -42.31046 -41.10762 -39.25985 -37.76054 -34.57058 -33.43652 -33.05240 -31.86581 -30.66275 -29.35216 -27.00648 -26.38616 -25.08029 -22.76823 -22.16659 -21.78044 -21.29699 -20.99880 -20.55485 -19.15968 -18.95277 -18.13515 -17.37699 -16.81565 -16.46428 -16.34669 -16.10803 -15.70149 -15.59313 -15.19348 -15.01590 -14.66209 -14.60003 -14.51193 -14.12086 -14.07056 -13.90530 -13.73900 -13.66902 -13.35999 -12.85162 -12.60417 -12.12169 -12.00515 -11.75025 -11.66057 -10.99289 -10.97540 -10.96493 -10.76518 -10.21720 -9.72429 -9.35946 -8.91671 -4.87976 1.05750 1.10764 1.32583 1.54156 1.71054 1.84106 1.98146 2.09185 2.16709 2.23646 2.48729 3.15052 3.25321 3.38379 3.44089 3.58405 3.63317 3.83659 3.86546 3.93146 3.99293 4.09757 4.32837 4.38342 4.42631 4.46283 4.46501 4.57322 4.58939 4.66309 4.72072 4.80872 4.81917 4.91289 5.12891 5.31175 5.34757 5.39720 5.78892 6.03479 6.18699 6.33960 6.35162 6.40609 6.65295 7.13584 7.13657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.055 4.055 3 Si 0.715 3.285 4 C -0.008 4.008 5 C -0.186 4.186 6 C -0.173 4.173 7 C 0.035 3.965 8 C -0.072 4.072 9 C 0.515 3.485 10 O -0.521 6.521 11 N -0.716 5.716 12 C 0.125 3.875 13 H 0.108 0.892 14 C -0.149 4.149 15 C -0.025 4.025 16 H 0.119 0.881 17 C 0.217 3.783 18 N -0.487 5.487 19 C -0.027 4.027 20 C -0.056 4.056 21 N -0.565 5.565 22 C -0.132 4.132 23 N -0.535 5.535 24 H 0.379 0.621 25 H 0.115 0.885 26 H -0.257 1.257 27 H -0.258 1.258 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.404 0.596 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.418 0.582 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -1.122 -0.964 2.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.165 4.165 3 Si 0.614 3.386 4 C -0.122 4.122 5 C -0.211 4.211 6 C -0.197 4.197 7 C -0.078 4.078 8 C -0.112 4.112 9 C 0.301 3.699 10 O -0.395 6.395 11 N -0.369 5.369 12 C 0.019 3.981 13 H 0.126 0.874 14 C -0.189 4.189 15 C -0.045 4.045 16 H 0.137 0.863 17 C -0.047 4.047 18 N -0.206 5.206 19 C -0.175 4.175 20 C -0.189 4.189 21 N -0.169 5.169 22 C -0.172 4.172 23 N -0.130 5.130 24 H 0.228 0.772 25 H 0.133 0.867 26 H -0.182 1.182 27 H -0.183 1.183 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.239 0.761 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.256 0.744 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.073 -0.618 0.032 2.164 hybrid contribution -1.645 -0.097 -1.156 2.013 sum 0.429 -0.716 -1.124 1.400 Atomic orbital electron populations 1.86563 1.17956 1.80233 1.49634 1.24784 0.83752 1.11446 0.96493 0.94428 0.91422 0.72562 0.80195 1.20785 1.05911 0.85381 1.00100 1.20654 1.04631 0.99974 0.95856 1.20590 1.05758 0.92277 1.01112 1.19464 1.02374 0.96431 0.89542 1.20132 0.99651 0.94845 0.96619 1.20655 0.84940 0.82691 0.81654 1.90773 1.47536 1.32491 1.68698 1.45677 1.36388 1.17493 1.37302 1.21741 0.90684 0.98470 0.87210 0.87390 1.23511 1.03135 0.94640 0.97580 1.21067 1.00207 0.94546 0.88638 0.86257 1.22939 1.00030 0.88989 0.92768 1.70243 1.21933 1.14427 1.14038 1.22421 1.02869 0.98485 0.93748 1.22830 1.09363 0.90440 0.96288 1.43271 1.45897 1.12469 1.15275 1.23397 0.99090 0.96577 0.98096 1.41791 1.40954 1.11035 1.19232 0.77245 0.86747 1.18162 1.18335 0.84094 0.84578 0.86281 0.88053 0.76141 0.89574 0.89724 0.81150 0.80458 0.74389 0.89619 0.88540 0.75086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.06 12.88 -35.23 -0.45 -1.52 16 2 C -0.06 -0.02 3.08 36.00 0.11 0.09 16 3 Si 0.71 -0.33 30.59 -169.99 -5.20 -5.53 16 4 C -0.01 -0.01 6.50 -81.79 -0.53 -0.54 16 5 C -0.19 -0.32 9.37 -39.78 -0.37 -0.69 16 6 C -0.17 -0.32 10.76 -39.78 -0.43 -0.75 16 7 C 0.04 0.03 5.66 -81.79 -0.46 -0.43 16 8 C -0.07 0.17 6.24 -29.04 -0.18 -0.01 16 9 C 0.51 -0.03 7.82 -10.99 -0.09 -0.11 16 10 O -0.52 -2.46 15.63 5.55 0.09 -2.38 16 11 N -0.72 1.91 5.26 -53.02 -0.28 1.63 16 12 C 0.12 -0.25 4.32 -67.12 -0.29 -0.54 16 13 H 0.11 -0.01 7.46 -51.93 -0.39 -0.40 16 14 C -0.15 0.39 7.36 -25.92 -0.19 0.20 16 15 C -0.02 0.04 4.16 -90.96 -0.38 -0.33 16 16 H 0.12 -0.28 8.14 -51.93 -0.42 -0.70 16 17 C 0.22 0.21 7.36 -155.42 -1.14 -0.93 16 18 N -0.49 -1.83 11.25 -10.81 -0.12 -1.96 16 19 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 20 C -0.06 0.01 12.04 -16.56 -0.20 -0.19 16 21 N -0.57 0.45 5.94 -10.23 -0.06 0.39 16 22 C -0.13 0.33 7.37 -25.92 -0.19 0.14 16 23 N -0.54 -0.45 6.07 -5.44 -0.03 -0.49 16 24 H 0.38 -0.03 8.70 45.56 0.40 0.37 16 25 H 0.11 -0.08 7.96 -51.93 -0.41 -0.49 16 26 H -0.26 -0.51 7.11 56.52 0.40 -0.11 16 27 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 28 H 0.14 0.01 6.22 -52.49 -0.33 -0.32 16 29 H 0.14 0.09 8.06 -52.49 -0.42 -0.33 16 30 H 0.12 -0.55 8.14 -51.93 -0.42 -0.97 16 31 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 32 H 0.40 -2.14 8.70 -40.82 -0.36 -2.50 16 33 H 0.09 -0.30 6.65 -51.93 -0.35 -0.64 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.17 0.02 8.06 -52.48 -0.42 -0.41 16 36 H 0.18 -0.57 8.06 -52.49 -0.42 -0.99 16 37 H 0.42 -1.46 7.54 -40.82 -0.31 -1.77 16 38 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 39 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 40 H 0.41 -0.30 8.96 -40.82 -0.37 -0.66 16 LS Contribution 340.94 15.07 5.14 5.14 Total: 0.00 -11.43 340.94 -10.59 -22.02 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: -5.11 Total: -12.94 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.56 Total: -4.37 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.49 Total: -0.42 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.37 Total: -3.89 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: -5.20 Total: -5.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -11.43 -10.59 -22.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.948 kcal (2) G-P(sol) polarization free energy of solvation -11.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds