Wall clock time and date at job start Tue Mar 9 2021 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34852 * 125.89284 * 119.68726 * 4 2 1 6 6 C 1.40890 * 107.41514 * 179.88173 * 5 4 2 7 7 C 1.34851 * 107.41918 * 0.38270 * 6 5 4 8 8 C 1.50696 * 125.88845 * 179.80541 * 7 6 5 9 9 C 1.50700 * 109.47386 * 274.95134 * 8 7 6 10 10 O 1.21287 * 119.99649 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00442 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00337 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84755 * 336.20165 * 12 11 9 14 14 C 1.53774 * 113.61621 * 107.50432 * 12 11 9 15 15 C 1.53789 * 87.07805 * 89.11732 * 14 12 11 16 16 H 1.08999 * 113.61488 * 270.88605 * 15 14 12 17 17 C 1.50703 * 113.68816 * 139.99454 * 15 14 12 18 18 N 1.30495 * 125.64807 * 167.15762 * 17 15 14 19 19 C 1.34133 * 109.25191 * 179.89156 * 18 17 15 20 20 C 1.34660 * 108.02329 * 0.36840 * 19 18 17 21 21 N 1.35046 * 125.64813 * 347.46311 * 17 15 14 22 22 C 1.53775 * 87.07977 * 25.43569 * 15 14 12 23 23 N 1.36339 * 108.21722 * 359.76349 * 7 6 5 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.07994 * 126.28638 * 0.02562 * 5 4 2 29 29 H 1.08001 * 126.28594 * 180.12879 * 6 5 4 30 30 H 1.08999 * 109.47474 * 34.95758 * 8 7 6 31 31 H 1.08997 * 109.46949 * 154.95476 * 8 7 6 32 32 H 0.97000 * 119.99988 * 0.02562 * 11 9 8 33 33 H 1.08990 * 113.61921 * 203.66422 * 14 12 11 34 34 H 1.09000 * 113.61616 * 334.57634 * 14 12 11 35 35 H 1.08007 * 125.98706 * 180.11537 * 19 18 17 36 36 H 1.08000 * 126.59555 * 179.74293 * 20 19 18 37 37 H 0.96997 * 126.40039 * 359.94092 * 21 17 15 38 38 H 1.08999 * 113.61381 * 220.01715 * 22 15 14 39 39 H 1.09002 * 113.61858 * 89.11186 * 22 15 14 40 40 H 0.97005 * 125.63344 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7050 -0.1709 -2.1943 6 6 2.9442 -1.1744 -3.1539 7 6 2.3006 -2.2863 -2.7442 8 6 2.2757 -3.6091 -3.4658 9 6 1.1824 -3.5951 -4.5029 10 8 0.4918 -2.6079 -4.6426 11 7 0.9727 -4.6790 -5.2758 12 6 -0.0898 -4.6652 -6.2844 13 1 -0.8782 -3.9471 -6.0588 14 6 0.4324 -4.5761 -7.7280 15 6 0.4800 -6.1133 -7.7221 16 1 1.4262 -6.5195 -7.3648 17 6 0.0264 -6.7380 -9.0164 18 7 0.1903 -7.9872 -9.3564 19 6 -0.3393 -8.1878 -10.5723 20 6 -0.8435 -7.0167 -11.0054 21 7 -0.6118 -6.0965 -10.0188 22 6 -0.6158 -6.0647 -6.6443 23 7 1.6772 -2.0076 -1.5642 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5877 2.4585 -1.2243 27 1 1.5613 2.4680 1.2084 28 1 3.0752 0.8432 -2.2238 29 1 3.5314 -1.0707 -4.0544 30 1 3.2365 -3.7755 -3.9529 31 1 2.0875 -4.4096 -2.7504 32 1 1.5253 -5.4684 -5.1643 33 1 -0.2926 -4.1645 -8.4300 34 1 1.4140 -4.1093 -7.8093 35 1 -0.3547 -9.1236 -11.1114 36 1 -1.3356 -6.8375 -11.9500 37 1 -0.8600 -5.1590 -10.0363 38 1 -0.4805 -6.7994 -5.8507 39 1 -1.6275 -6.0598 -7.0500 40 1 1.1410 -2.6295 -1.0476 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:07:50 Heat of formation + Delta-G solvation = 62.810143 kcal Electronic energy + Delta-G solvation = -23578.063429 eV Core-core repulsion = 19975.864636 eV Total energy + Delta-G solvation = -3602.198792 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.10848 -42.32432 -41.04611 -39.22482 -37.85046 -34.53577 -33.45972 -32.98824 -31.90830 -30.64340 -29.32965 -26.82911 -26.32164 -25.07741 -22.73665 -22.13922 -21.77386 -21.34220 -21.00598 -20.46334 -19.08310 -18.99925 -18.06741 -17.32902 -16.77247 -16.43012 -16.37252 -16.08699 -15.64825 -15.55489 -15.22882 -14.99662 -14.61813 -14.59045 -14.52561 -14.12755 -14.07529 -13.85630 -13.76295 -13.50792 -13.31146 -12.76852 -12.49476 -12.19409 -11.87759 -11.86285 -11.52114 -11.06103 -11.02703 -11.01133 -10.83000 -10.12451 -9.78374 -9.36113 -8.95319 -4.88035 1.07912 1.09016 1.31737 1.59502 1.67544 1.84684 1.93855 2.11037 2.18131 2.29864 2.51332 3.28640 3.37088 3.37609 3.58626 3.69463 3.78457 3.81705 4.01551 4.09815 4.23144 4.24057 4.44625 4.52022 4.52685 4.55815 4.59425 4.64239 4.65493 4.80373 4.82011 4.87737 4.95028 5.05390 5.14740 5.26895 5.30499 5.53330 5.78032 5.99626 6.14519 6.38262 6.46871 6.51140 6.68594 7.11841 7.24768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.062 4.062 3 Si 0.798 3.202 4 C -0.019 4.019 5 C -0.202 4.202 6 C -0.200 4.200 7 C 0.034 3.966 8 C -0.068 4.068 9 C 0.515 3.485 10 O -0.575 6.575 11 N -0.701 5.701 12 C 0.124 3.876 13 H 0.088 0.912 14 C -0.141 4.141 15 C -0.021 4.021 16 H 0.125 0.875 17 C 0.209 3.791 18 N -0.530 5.530 19 C -0.063 4.063 20 C -0.046 4.046 21 N -0.559 5.559 22 C -0.123 4.123 23 N -0.537 5.537 24 H 0.385 0.615 25 H 0.127 0.873 26 H -0.292 1.292 27 H -0.297 1.297 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.419 0.581 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.208 0.792 37 H 0.430 0.570 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -1.761 -1.131 3.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.170 4.170 3 Si 0.702 3.298 4 C -0.132 4.132 5 C -0.227 4.227 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.108 4.108 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.018 3.982 13 H 0.107 0.893 14 C -0.180 4.180 15 C -0.041 4.041 16 H 0.143 0.857 17 C -0.056 4.056 18 N -0.251 5.251 19 C -0.210 4.210 20 C -0.180 4.180 21 N -0.164 5.164 22 C -0.162 4.162 23 N -0.132 5.132 24 H 0.234 0.766 25 H 0.145 0.855 26 H -0.219 1.219 27 H -0.225 1.225 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.195 0.805 36 H 0.224 0.776 37 H 0.271 0.729 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.562 -1.307 -0.143 2.880 hybrid contribution -1.833 0.093 -1.153 2.168 sum 0.728 -1.215 -1.295 1.919 Atomic orbital electron populations 1.86534 1.18918 1.80556 1.50188 1.24996 0.83044 1.12216 0.96783 0.93433 0.90074 0.70253 0.76019 1.20892 1.06141 0.85794 1.00390 1.20908 1.05029 1.00596 0.96137 1.20852 1.06914 0.93007 1.01685 1.19922 1.01257 0.97501 0.89319 1.20263 0.99998 0.94063 0.96436 1.21041 0.84696 0.82233 0.81795 1.90758 1.49669 1.34546 1.70403 1.45560 1.35975 1.17472 1.36364 1.21664 0.90564 0.98284 0.87690 0.89344 1.23483 1.03263 0.94092 0.97195 1.21133 1.00546 0.94705 0.87708 0.85665 1.23335 0.99864 0.88666 0.93686 1.70179 1.23532 1.16114 1.15238 1.22749 1.04344 0.99896 0.94002 1.23280 1.08017 0.89722 0.96998 1.43294 1.45223 1.13101 1.14745 1.23321 0.98755 0.96197 0.97923 1.41887 1.40873 1.11032 1.19435 0.76555 0.85508 1.21864 1.22501 0.83248 0.84095 0.83621 0.85243 0.74297 0.88676 0.89867 0.80529 0.77553 0.72865 0.88993 0.88841 0.74370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.51 12.88 -148.98 -1.92 -4.43 16 2 C -0.06 -0.06 3.08 71.23 0.22 0.16 16 3 Si 0.80 -0.24 30.59 68.60 2.10 1.85 16 4 C -0.02 -0.06 6.50 41.08 0.27 0.21 16 5 C -0.20 -0.81 9.37 22.14 0.21 -0.60 16 6 C -0.20 -0.82 10.76 22.14 0.24 -0.59 16 7 C 0.03 0.05 5.66 41.08 0.23 0.28 16 8 C -0.07 0.42 6.24 29.10 0.18 0.60 16 9 C 0.51 -0.25 7.82 87.66 0.69 0.43 16 10 O -0.58 -5.92 15.63 -3.05 -0.05 -5.97 16 11 N -0.70 4.31 5.26 -440.05 -2.32 1.99 16 12 C 0.12 -0.51 4.32 45.51 0.20 -0.31 16 13 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 14 C -0.14 0.80 7.36 31.12 0.23 1.02 16 15 C -0.02 0.09 4.16 -11.01 -0.05 0.04 16 16 H 0.13 -0.68 8.14 -2.39 -0.02 -0.69 16 17 C 0.21 0.39 7.36 138.13 1.02 1.41 16 18 N -0.53 -4.30 11.25 -188.13 -2.12 -6.42 16 19 C -0.06 -0.29 11.87 83.52 0.99 0.70 16 20 C -0.05 0.04 12.04 83.08 1.00 1.04 16 21 N -0.56 1.21 5.94 -186.27 -1.11 0.10 16 22 C -0.12 0.66 7.37 31.12 0.23 0.89 16 23 N -0.54 -0.90 6.07 -171.13 -1.04 -1.94 16 24 H 0.39 0.35 8.70 -74.06 -0.64 -0.29 16 25 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 26 H -0.29 -1.55 7.11 99.48 0.71 -0.85 16 27 H -0.30 -1.82 7.11 99.48 0.71 -1.12 16 28 H 0.15 0.13 6.22 -2.91 -0.02 0.11 16 29 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 30 H 0.15 -1.67 8.14 -2.39 -0.02 -1.69 16 31 H 0.13 -1.52 8.14 -2.39 -0.02 -1.53 16 32 H 0.42 -5.13 8.70 -92.71 -0.81 -5.94 16 33 H 0.09 -0.72 6.65 -2.39 -0.02 -0.73 16 34 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.21 -1.65 8.06 -2.91 -0.02 -1.67 16 37 H 0.43 -3.42 7.54 -92.71 -0.70 -4.12 16 38 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.09 -0.41 8.09 -2.39 -0.02 -0.43 16 40 H 0.42 -0.69 8.96 -92.70 -0.83 -1.52 16 Total: 0.00 -28.16 340.94 -2.62 -30.78 By element: Atomic # 1 Polarization: -19.43 SS G_CDS: -1.82 Total: -21.25 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.65 Total: 5.29 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -6.58 Total: -6.27 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.97 Total: -10.40 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: 2.10 Total: 1.85 kcal Total: -28.16 -2.62 -30.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.587 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds