Wall clock time and date at job start Tue Mar 9 2021 14:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.47232 * 2 1 4 4 C 1.50705 * 109.46380 * 240.00263 * 2 1 3 5 5 C 1.38709 * 120.02672 * 285.02049 * 4 2 1 6 6 O 1.35895 * 120.05826 * 359.96119 * 5 4 2 7 7 C 1.42904 * 117.00128 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00089 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99557 * 180.02562 * 10 8 7 12 12 H 1.08992 * 112.85542 * 23.80244 * 11 10 8 13 13 C 1.53781 * 113.61410 * 155.00026 * 11 10 8 14 14 C 1.53781 * 87.08516 * 89.11364 * 13 11 10 15 15 H 1.09007 * 113.60961 * 270.88620 * 14 13 11 16 16 C 1.50700 * 113.61924 * 140.06686 * 14 13 11 17 17 N 1.30498 * 125.65087 * 95.01854 * 16 14 13 18 18 C 1.34124 * 109.25556 * 180.02562 * 17 16 14 19 19 C 1.34674 * 108.02030 * 0.02562 * 18 17 16 20 20 N 1.35046 * 125.64532 * 274.72018 * 16 14 13 21 21 C 1.53778 * 87.08018 * 25.43105 * 14 13 11 22 22 C 1.38759 * 119.88803 * 179.97438 * 5 4 2 23 23 C 1.38126 * 119.94113 * 359.97438 * 22 5 4 24 24 C 1.38290 * 120.05768 * 359.97438 * 23 22 5 25 25 C 1.38164 * 120.02639 * 105.00360 * 4 2 1 26 26 H 0.96700 * 113.99711 * 59.98948 * 1 2 3 27 27 H 1.08998 * 109.47252 * 120.01022 * 2 1 3 28 28 H 1.48500 * 110.00194 * 298.68096 * 3 2 1 29 29 H 1.48492 * 110.00132 * 60.00781 * 3 2 1 30 30 H 1.09000 * 109.46735 * 300.00020 * 7 6 5 31 31 H 1.09002 * 109.46782 * 59.99820 * 7 6 5 32 32 H 0.97002 * 120.00324 * 359.97438 * 10 8 7 33 33 H 1.09001 * 113.61483 * 203.66304 * 13 11 10 34 34 H 1.09004 * 113.61661 * 334.47958 * 13 11 10 35 35 H 1.07997 * 125.99185 * 180.02562 * 18 17 16 36 36 H 1.07999 * 126.59038 * 179.97438 * 19 18 17 37 37 H 0.96997 * 126.40063 * 0.02562 * 20 16 14 38 38 H 1.08997 * 113.61510 * 220.01930 * 21 14 13 39 39 H 1.09008 * 113.61464 * 89.11997 * 21 14 13 40 40 H 1.07998 * 120.02758 * 179.97438 * 22 5 4 41 41 H 1.07995 * 119.97120 * 179.97438 * 23 22 5 42 42 H 1.07995 * 119.94278 * 180.27458 * 24 23 22 43 43 H 1.07997 * 119.97418 * 0.04002 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.8691 -2.0940 -1.3073 6 8 1.3561 -2.8107 -0.2729 7 6 1.3240 -4.2316 -0.4210 8 6 0.7276 -4.8523 0.8161 9 8 0.3663 -4.1472 1.7343 10 7 0.5969 -6.1909 0.9023 11 6 0.0167 -6.7941 2.1047 12 1 -0.6273 -6.1077 2.6542 13 6 -0.6207 -8.1715 1.8566 14 6 0.7609 -8.7773 2.1547 15 1 1.3961 -8.8705 1.2737 16 6 0.7020 -10.0432 2.9702 17 7 0.7067 -11.2572 2.4916 18 6 0.6435 -12.1327 3.5057 19 6 0.5972 -11.4347 4.6565 20 7 0.6412 -10.1092 4.3177 21 6 1.0461 -7.5174 2.9891 22 6 2.3318 -2.7451 -2.4419 23 6 2.8524 -2.0143 -3.4920 24 6 2.9123 -0.6349 -3.4135 25 6 2.4536 0.0159 -2.2834 26 1 -0.3933 0.4418 -0.7650 27 1 1.7924 -0.5140 0.8899 28 1 1.5880 2.4586 -1.2242 29 1 1.5618 2.4678 1.2085 30 1 0.7169 -4.4929 -1.2878 31 1 2.3382 -4.6053 -0.5618 32 1 0.8863 -6.7548 0.1680 33 1 -1.3820 -8.4387 2.5896 34 1 -0.9519 -8.3207 0.8289 35 1 0.6317 -13.2088 3.4153 36 1 0.5415 -11.8424 5.6550 37 1 0.6273 -9.3576 4.9308 38 1 2.0620 -7.1390 2.8753 39 1 0.7406 -7.6058 4.0317 40 1 2.2848 -3.8223 -2.5038 41 1 3.2130 -2.5206 -4.3752 42 1 3.3156 -0.0651 -4.2375 43 1 2.5025 1.0932 -2.2241 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:08:02 Heat of formation + Delta-G solvation = 20.388843 kcal Electronic energy + Delta-G solvation = -27020.377202 eV Core-core repulsion = 23034.856462 eV Total energy + Delta-G solvation = -3985.520739 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.11167 -41.67180 -40.98924 -39.45410 -38.38714 -37.59541 -34.66376 -33.45333 -32.74667 -31.34298 -30.69472 -29.27504 -26.84934 -26.68765 -26.12986 -23.71352 -22.65909 -22.57015 -21.85371 -21.77179 -20.53076 -19.54301 -19.03371 -18.30705 -18.05509 -17.46571 -17.18952 -16.89995 -16.55948 -16.15905 -16.07556 -15.74738 -15.58332 -15.40251 -15.31086 -15.01863 -14.92640 -14.57311 -14.46844 -14.18734 -13.72813 -13.71211 -13.50426 -13.34674 -13.04406 -12.57290 -12.48903 -12.11712 -11.91545 -11.87242 -11.68063 -11.54859 -11.06494 -11.04888 -11.02639 -10.53171 -10.24514 -9.96211 -9.36080 -9.20157 -4.95261 0.25042 0.43558 1.08153 1.29199 1.39233 1.44548 1.54437 1.93485 2.10928 2.19905 2.57436 2.71558 3.26400 3.35110 3.45695 3.47523 3.58771 3.72721 3.75749 3.91033 3.98609 4.06344 4.08303 4.14556 4.22967 4.33388 4.38751 4.51649 4.53016 4.55159 4.58443 4.63532 4.68649 4.76271 4.85134 4.93450 4.99521 5.01389 5.13538 5.29922 5.39189 5.43702 5.54914 5.77308 5.78098 6.27261 6.44191 6.46927 6.53005 7.08400 7.11781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.082 4.082 3 Si 0.781 3.219 4 C -0.164 4.164 5 C 0.130 3.870 6 O -0.312 6.312 7 C 0.036 3.964 8 C 0.517 3.483 9 O -0.567 6.567 10 N -0.693 5.693 11 C 0.123 3.877 12 H 0.091 0.909 13 C -0.121 4.121 14 C -0.021 4.021 15 H 0.127 0.873 16 C 0.209 3.791 17 N -0.530 5.530 18 C -0.063 4.063 19 C -0.046 4.046 20 N -0.559 5.559 21 C -0.141 4.141 22 C -0.212 4.212 23 C -0.075 4.075 24 C -0.155 4.155 25 C -0.089 4.089 26 H 0.381 0.619 27 H 0.097 0.903 28 H -0.266 1.266 29 H -0.308 1.308 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.422 0.578 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.178 0.822 36 H 0.208 0.792 37 H 0.431 0.569 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -2.105 -3.407 5.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.189 4.189 3 Si 0.685 3.315 4 C -0.165 4.165 5 C 0.084 3.916 6 O -0.225 6.225 7 C -0.042 4.042 8 C 0.304 3.696 9 O -0.445 6.445 10 N -0.347 5.347 11 C 0.017 3.983 12 H 0.109 0.891 13 C -0.160 4.160 14 C -0.041 4.041 15 H 0.145 0.855 16 C -0.056 4.056 17 N -0.250 5.250 18 C -0.210 4.210 19 C -0.180 4.180 20 N -0.164 5.164 21 C -0.180 4.180 22 C -0.230 4.230 23 C -0.093 4.093 24 C -0.173 4.173 25 C -0.106 4.106 26 H 0.230 0.770 27 H 0.115 0.885 28 H -0.192 1.192 29 H -0.237 1.237 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.260 0.740 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.195 0.805 36 H 0.224 0.776 37 H 0.272 0.728 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.885 -1.302 -2.858 4.996 hybrid contribution -1.190 -0.419 0.600 1.397 sum 2.695 -1.721 -2.258 3.915 Atomic orbital electron populations 1.86650 1.18977 1.80333 1.49685 1.25198 0.83244 1.12314 0.98186 0.94053 0.89885 0.70987 0.76542 1.19701 1.06751 0.91468 0.98591 1.19053 0.94098 0.91070 0.87346 1.86183 1.78023 1.18660 1.39649 1.22711 1.04631 0.79944 0.96921 1.20514 0.78082 0.82791 0.88249 1.90781 1.49880 1.62465 1.41340 1.45331 1.63479 1.05539 1.20355 1.21734 0.95597 0.94272 0.86716 0.89121 1.23328 0.95921 0.92284 1.04488 1.21136 0.99525 0.85561 0.97844 0.85546 1.23302 1.04831 0.95576 0.81844 1.70172 1.21190 0.99828 1.33807 1.22747 1.08984 1.00526 0.88717 1.23284 1.09713 0.82836 1.02156 1.43295 1.55876 1.08979 1.08201 1.23496 1.01041 0.94097 0.99380 1.21600 1.05553 1.01851 0.93996 1.21399 0.95458 0.94187 0.98233 1.21398 1.02076 0.95123 0.98664 1.21185 0.96492 1.00482 0.92458 0.77026 0.88479 1.19170 1.23660 0.86171 0.85612 0.73993 0.88550 0.88784 0.80524 0.77562 0.72846 0.89803 0.88394 0.82728 0.82927 0.83295 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.62 12.88 -148.98 -1.92 -7.54 16 2 C -0.08 -0.51 2.38 71.24 0.17 -0.34 16 3 Si 0.78 1.00 30.25 68.60 2.07 3.07 16 4 C -0.16 -0.65 5.27 -19.77 -0.10 -0.76 16 5 C 0.13 0.52 6.66 22.51 0.15 0.67 16 6 O -0.31 -2.24 9.00 -73.33 -0.66 -2.90 16 7 C 0.04 -0.09 5.22 71.24 0.37 0.29 16 8 C 0.52 1.40 7.91 87.66 0.69 2.09 16 9 O -0.57 -8.31 16.10 16.01 0.26 -8.05 16 10 N -0.69 3.39 5.26 -440.04 -2.32 1.07 16 11 C 0.12 -0.42 4.32 45.52 0.20 -0.22 16 12 H 0.09 0.14 7.46 -2.39 -0.02 0.12 16 13 C -0.12 0.64 7.37 31.12 0.23 0.87 16 14 C -0.02 0.09 4.16 -11.01 -0.05 0.04 16 15 H 0.13 -0.73 8.14 -2.38 -0.02 -0.75 16 16 C 0.21 0.36 7.37 138.13 1.02 1.38 16 17 N -0.53 -4.20 11.25 -188.13 -2.12 -6.32 16 18 C -0.06 -0.28 11.87 83.53 0.99 0.71 16 19 C -0.05 0.05 12.04 83.09 1.00 1.05 16 20 N -0.56 1.25 5.94 -186.27 -1.11 0.15 16 21 C -0.14 0.77 7.35 31.12 0.23 1.00 16 22 C -0.21 0.45 9.04 22.37 0.20 0.65 16 23 C -0.07 0.28 10.04 22.26 0.22 0.51 16 24 C -0.15 0.45 10.04 22.28 0.22 0.68 16 25 C -0.09 0.03 8.66 22.25 0.19 0.23 16 26 H 0.38 1.09 8.70 -74.06 -0.64 0.45 16 27 H 0.10 0.91 7.83 -2.39 -0.02 0.89 16 28 H -0.27 -0.54 6.68 99.48 0.67 0.13 16 29 H -0.31 -2.94 7.11 99.48 0.71 -2.24 16 30 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16 31 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 32 H 0.42 -5.02 8.70 -92.71 -0.81 -5.83 16 33 H 0.10 -0.43 8.09 -2.39 -0.02 -0.45 16 34 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 35 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.21 -1.65 8.06 -2.91 -0.02 -1.68 16 37 H 0.43 -3.44 7.54 -92.71 -0.70 -4.14 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.10 -0.74 6.65 -2.38 -0.02 -0.75 16 40 H 0.16 -1.29 6.30 -2.91 -0.02 -1.31 16 41 H 0.15 -1.37 8.06 -2.91 -0.02 -1.39 16 42 H 0.15 -1.10 8.06 -2.91 -0.02 -1.13 16 43 H 0.15 -0.50 4.86 -2.91 -0.01 -0.51 16 Total: 0.00 -32.17 362.29 -1.12 -33.29 By element: Atomic # 1 Polarization: -20.53 SS G_CDS: -1.07 Total: -21.60 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.74 Total: 8.82 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -5.54 Total: -5.10 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -2.32 Total: -18.48 kcal Atomic # 14 Polarization: 1.00 SS G_CDS: 2.07 Total: 3.07 kcal Total: -32.17 -1.12 -33.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.679 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds