Wall clock time and date at job start Tue Mar 9 2021 14:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47276 * 2 1 4 4 C 1.50705 * 109.46957 * 239.99679 * 2 1 3 5 5 C 1.38270 * 119.93813 * 120.27839 * 4 2 1 6 6 C 1.38147 * 120.05177 * 180.24023 * 5 4 2 7 7 C 1.38736 * 119.94540 * 359.46077 * 6 5 4 8 8 O 1.35892 * 120.05957 * 180.26040 * 7 6 5 9 9 C 1.42899 * 117.00396 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47210 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99660 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99925 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84851 * 25.32388 * 13 12 10 15 15 C 1.53777 * 113.61680 * 156.52495 * 13 12 10 16 16 C 1.53780 * 87.08223 * 89.11496 * 15 13 12 17 17 H 1.09002 * 113.61158 * 270.88542 * 16 15 13 18 18 C 1.50690 * 113.61281 * 139.98100 * 16 15 13 19 19 N 1.30507 * 125.64997 * 94.69445 * 18 16 15 20 20 C 1.34126 * 109.25622 * 179.88989 * 19 18 16 21 21 C 1.34666 * 108.02108 * 0.36857 * 20 19 18 22 22 N 1.35042 * 125.65252 * 274.99855 * 18 16 15 23 23 C 1.53776 * 113.61157 * 254.13452 * 13 12 10 24 24 C 1.38740 * 119.88595 * 0.28283 * 7 6 5 25 25 C 1.38146 * 119.94197 * 359.97438 * 24 7 6 26 26 H 0.96695 * 113.99875 * 59.99881 * 1 2 3 27 27 H 1.09002 * 109.47438 * 120.00333 * 2 1 3 28 28 H 1.48497 * 110.00036 * 60.00230 * 3 2 1 29 29 H 1.48499 * 109.99739 * 181.32129 * 3 2 1 30 30 H 1.07995 * 119.98059 * 359.97438 * 5 4 2 31 31 H 1.08002 * 120.03108 * 179.74549 * 6 5 4 32 32 H 1.08997 * 109.47463 * 300.00468 * 9 8 7 33 33 H 1.09002 * 109.46662 * 59.99805 * 9 8 7 34 34 H 0.96996 * 120.00073 * 359.97438 * 12 10 9 35 35 H 1.08997 * 113.61338 * 203.66638 * 15 13 12 36 36 H 1.09004 * 113.61200 * 334.48066 * 15 13 12 37 37 H 1.07997 * 125.98897 * 180.11312 * 20 19 18 38 38 H 1.08004 * 126.59381 * 179.73977 * 21 20 19 39 39 H 0.96996 * 126.39789 * 359.94227 * 22 18 16 40 40 H 1.08999 * 113.62209 * 25.42966 * 23 13 12 41 41 H 1.09002 * 113.61275 * 156.33329 * 23 13 12 42 42 H 1.07993 * 120.02463 * 180.02562 * 24 7 6 43 43 H 1.08006 * 119.96944 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7309 -0.0391 -2.1369 6 6 3.1886 -0.6866 -3.2682 7 6 2.8545 -2.0150 -3.4887 8 8 3.3078 -2.6557 -4.5980 9 6 2.9238 -4.0226 -4.7602 10 6 3.5148 -4.5623 -6.0371 11 8 4.1980 -3.8470 -6.7389 12 7 3.2841 -5.8398 -6.3992 13 6 3.8591 -6.3647 -7.6402 14 1 4.7610 -5.8346 -7.9462 15 6 4.0106 -7.8950 -7.6501 16 6 2.5847 -7.9538 -8.2231 17 1 1.8086 -7.9977 -7.4591 18 6 2.4089 -8.9946 -9.2985 19 7 1.9713 -10.2105 -9.1160 20 6 1.9433 -10.8520 -10.2936 21 6 2.3879 -10.0041 -11.2406 22 7 2.6834 -8.8257 -10.6099 23 6 2.8313 -6.5354 -8.7713 24 6 2.0565 -2.6880 -2.5749 25 6 1.5970 -2.0343 -1.4479 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 0.8899 28 1 1.5616 2.4678 1.2085 29 1 3.5346 1.7701 -0.0322 30 1 2.9944 0.9937 -1.9627 31 1 3.8097 -0.1606 -3.9780 32 1 3.2898 -4.6056 -3.9151 33 1 1.8369 -4.0916 -4.8056 34 1 2.7380 -6.4120 -5.8377 35 1 4.7738 -8.2537 -8.3406 36 1 4.1011 -8.3312 -6.6552 37 1 1.6245 -11.8714 -10.4535 38 1 2.4920 -10.2137 -12.2950 39 1 3.0256 -8.0197 -11.0271 40 1 1.9689 -5.8749 -8.6812 41 1 3.2727 -6.5231 -9.7679 42 1 1.7954 -3.7221 -2.7441 43 1 0.9753 -2.5577 -0.7364 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:08:05 Heat of formation + Delta-G solvation = 17.885866 kcal Electronic energy + Delta-G solvation = -26343.105831 eV Core-core repulsion = 22357.476555 eV Total energy + Delta-G solvation = -3985.629277 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.09835 -41.62747 -40.94063 -39.54229 -38.74329 -37.09928 -34.65097 -33.44177 -32.18839 -31.96743 -30.78909 -29.40588 -26.83519 -26.39524 -25.94849 -24.05876 -22.76160 -22.39541 -21.82021 -21.74788 -20.51746 -19.50054 -19.03157 -18.39794 -18.05409 -17.45171 -17.27127 -16.74458 -16.40205 -16.16693 -15.95253 -15.74720 -15.60266 -15.41246 -15.32239 -14.98336 -14.70143 -14.56758 -14.46519 -14.21092 -14.01878 -13.70397 -13.49360 -13.34493 -13.27059 -12.53353 -12.26009 -12.12060 -12.07018 -11.90984 -11.69250 -11.52372 -11.06047 -11.04215 -11.01311 -10.40918 -10.23454 -10.03729 -9.35093 -9.21336 -4.99053 0.26509 0.33833 1.09225 1.34255 1.39626 1.43200 1.63798 1.97019 2.11867 2.21039 2.56304 2.66985 3.27244 3.36884 3.47380 3.57514 3.60144 3.73929 3.76904 3.83113 3.95646 4.03500 4.07793 4.09826 4.24147 4.30307 4.41619 4.52800 4.54310 4.57488 4.60295 4.62027 4.64845 4.77680 4.86750 4.95000 5.00905 5.02744 5.14487 5.18142 5.29731 5.44875 5.49916 5.68133 5.78973 6.25302 6.43056 6.48284 6.79987 7.08195 7.12886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.065 4.065 3 Si 0.768 3.232 4 C -0.162 4.162 5 C -0.078 4.078 6 C -0.158 4.158 7 C 0.120 3.880 8 O -0.317 6.317 9 C 0.036 3.964 10 C 0.519 3.481 11 O -0.567 6.567 12 N -0.694 5.694 13 C 0.124 3.876 14 H 0.093 0.907 15 C -0.121 4.121 16 C -0.022 4.022 17 H 0.126 0.874 18 C 0.208 3.792 19 N -0.530 5.530 20 C -0.063 4.063 21 C -0.045 4.045 22 N -0.558 5.558 23 C -0.141 4.141 24 C -0.206 4.206 25 C -0.059 4.059 26 H 0.395 0.605 27 H 0.107 0.893 28 H -0.300 1.300 29 H -0.288 1.288 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.422 0.578 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.177 0.823 38 H 0.208 0.792 39 H 0.431 0.569 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.157 0.843 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 -1.053 -2.561 3.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.175 4.175 3 Si 0.675 3.325 4 C -0.162 4.162 5 C -0.096 4.096 6 C -0.177 4.177 7 C 0.075 3.925 8 O -0.230 6.230 9 C -0.042 4.042 10 C 0.305 3.695 11 O -0.445 6.445 12 N -0.348 5.348 13 C 0.018 3.982 14 H 0.111 0.889 15 C -0.160 4.160 16 C -0.042 4.042 17 H 0.144 0.856 18 C -0.056 4.056 19 N -0.250 5.250 20 C -0.210 4.210 21 C -0.180 4.180 22 N -0.163 5.163 23 C -0.181 4.181 24 C -0.224 4.224 25 C -0.077 4.077 26 H 0.245 0.755 27 H 0.125 0.875 28 H -0.228 1.228 29 H -0.215 1.215 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.260 0.740 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.194 0.806 38 H 0.224 0.776 39 H 0.272 0.728 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.174 0.826 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.075 -0.586 -1.515 1.948 hybrid contribution 0.234 -0.546 -0.629 0.865 sum -0.841 -1.132 -2.144 2.566 Atomic orbital electron populations 1.86456 1.17261 1.82115 1.50551 1.25005 0.85207 1.10208 0.97083 0.93778 0.77870 0.76008 0.84853 1.20338 1.01828 0.95879 0.98170 1.20974 0.96072 0.99883 0.92651 1.20586 1.04568 0.92665 0.99880 1.19226 0.94477 0.92569 0.86245 1.86115 1.70969 1.25399 1.40554 1.22720 1.02678 0.81943 0.96818 1.20479 0.80024 0.82237 0.86752 1.90768 1.39845 1.58654 1.55254 1.45355 1.53479 1.11416 1.24512 1.21737 0.97075 0.94928 0.84475 0.88869 1.23318 0.95702 0.93596 1.03368 1.21197 0.99579 0.89451 0.93960 0.85623 1.23323 1.02524 0.94715 0.85045 1.70177 1.20982 1.05284 1.28573 1.22739 1.07740 1.01850 0.88684 1.23279 1.07297 0.86317 1.01084 1.43286 1.50378 1.14398 1.08244 1.23548 1.00279 0.95002 0.99237 1.21536 1.02534 1.02160 0.96198 1.20987 0.96845 0.93563 0.96308 0.75510 0.87549 1.22845 1.21513 0.83562 0.84594 0.85900 0.85666 0.74002 0.88492 0.88765 0.80598 0.77569 0.72824 0.89872 0.88348 0.82574 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.32 12.77 -148.98 -1.90 -1.58 16 2 C -0.06 0.06 2.82 71.24 0.20 0.27 16 3 Si 0.77 -1.45 29.78 68.60 2.04 0.60 16 4 C -0.16 0.07 5.39 -19.85 -0.11 -0.04 16 5 C -0.08 0.03 8.66 22.26 0.19 0.22 16 6 C -0.16 -0.35 9.99 22.37 0.22 -0.13 16 7 C 0.12 0.26 6.69 22.51 0.15 0.42 16 8 O -0.32 -1.35 9.67 -73.30 -0.71 -2.06 16 9 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 10 C 0.52 0.21 7.91 87.66 0.69 0.90 16 11 O -0.57 -6.61 16.12 16.00 0.26 -6.35 16 12 N -0.69 4.52 5.26 -440.04 -2.32 2.20 16 13 C 0.12 -0.62 4.29 45.51 0.20 -0.42 16 14 H 0.09 -0.06 7.50 -2.39 -0.02 -0.08 16 15 C -0.12 0.78 7.37 31.12 0.23 1.01 16 16 C -0.02 0.11 4.18 -10.92 -0.05 0.06 16 17 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 18 C 0.21 0.23 7.36 138.12 1.02 1.25 16 19 N -0.53 -3.95 11.25 -188.14 -2.12 -6.06 16 20 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 21 C -0.05 0.07 12.04 83.09 1.00 1.07 16 22 N -0.56 1.63 5.94 -186.27 -1.11 0.52 16 23 C -0.14 0.92 7.37 31.21 0.23 1.15 16 24 C -0.21 0.41 9.04 22.37 0.20 0.61 16 25 C -0.06 0.06 9.60 22.25 0.21 0.27 16 26 H 0.39 -3.30 8.70 -74.06 -0.64 -3.95 16 27 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 28 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 29 H -0.29 -0.89 7.11 99.48 0.71 -0.19 16 30 H 0.15 -0.61 4.87 -2.91 -0.01 -0.63 16 31 H 0.14 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.12 -1.25 7.66 -2.39 -0.02 -1.27 16 33 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 34 H 0.42 -5.57 8.70 -92.71 -0.81 -6.37 16 35 H 0.10 -0.55 8.09 -2.39 -0.02 -0.57 16 36 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 37 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 38 H 0.21 -1.75 8.06 -2.91 -0.02 -1.78 16 39 H 0.43 -3.78 7.53 -92.71 -0.70 -4.48 16 40 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.10 -0.85 6.65 -2.39 -0.02 -0.87 16 42 H 0.16 -1.30 6.30 -2.91 -0.02 -1.31 16 43 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: 0.00 -30.03 363.10 -1.12 -31.15 By element: Atomic # 1 Polarization: -24.97 SS G_CDS: -1.03 Total: -26.00 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.76 Total: 7.59 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: -5.54 Total: -3.34 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -2.35 Total: -9.99 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.04 Total: 0.60 kcal Total: -30.03 -1.12 -31.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.032 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds