Wall clock time and date at job start Tue Mar 9 2021 14:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33816 * 122.45146 * 2 1 4 4 C 1.50702 * 124.51796 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47506 * 29.99549 * 4 3 2 6 6 Si 1.86302 * 109.46839 * 149.99855 * 4 3 2 7 7 S 1.70612 * 110.95494 * 179.78082 * 3 2 1 8 8 C 1.75833 * 91.56293 * 0.30501 * 7 3 2 9 9 C 1.46590 * 125.45606 * 179.97438 * 8 7 3 10 10 O 1.21699 * 119.99828 * 179.69343 * 9 8 7 11 11 N 1.34777 * 120.00032 * 359.69623 * 9 8 7 12 12 C 1.46499 * 120.00010 * 179.97438 * 11 9 8 13 13 H 1.09007 * 112.84814 * 23.80913 * 12 11 9 14 14 C 1.53776 * 113.61195 * 155.00075 * 12 11 9 15 15 C 1.53782 * 87.08320 * 89.20480 * 14 12 11 16 16 H 1.09003 * 113.61214 * 270.80117 * 15 14 12 17 17 C 1.50692 * 113.61668 * 139.97726 * 15 14 12 18 18 N 1.30501 * 125.64779 * 95.02651 * 17 15 14 19 19 C 1.34134 * 109.25535 * 179.97438 * 18 17 15 20 20 C 1.34668 * 108.01972 * 0.02562 * 19 18 17 21 21 N 1.35044 * 125.65329 * 275.02635 * 17 15 14 22 22 C 1.53779 * 113.69381 * 252.53736 * 12 11 9 23 23 C 1.36643 * 109.08224 * 359.70004 * 8 7 3 24 24 H 1.08994 * 109.47482 * 270.00181 * 1 2 3 25 25 H 1.08994 * 109.46745 * 30.00541 * 1 2 3 26 26 H 1.09001 * 109.46673 * 149.99859 * 1 2 3 27 27 H 1.09004 * 109.46734 * 269.99622 * 4 3 2 28 28 H 0.96702 * 113.99864 * 60.00465 * 5 4 3 29 29 H 1.48500 * 110.00103 * 58.68184 * 6 4 3 30 30 H 1.48501 * 109.99753 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99834 * 0.02562 * 11 9 8 32 32 H 1.09001 * 113.62082 * 334.65135 * 14 12 11 33 33 H 1.09004 * 113.61252 * 203.75058 * 14 12 11 34 34 H 1.08001 * 125.98356 * 179.97438 * 19 18 17 35 35 H 1.08003 * 126.59021 * 180.02562 * 20 19 18 36 36 H 0.96995 * 126.39482 * 359.97438 * 21 17 15 37 37 H 1.08993 * 113.61319 * 156.32080 * 22 12 11 38 38 H 1.09001 * 113.60870 * 25.42004 * 22 12 11 39 39 H 1.08005 * 123.34653 * 180.24799 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4979 0.6745 6 14 2.7928 3.6824 0.8787 7 16 3.8970 0.7892 0.0061 8 6 3.5937 -0.9428 -0.0007 9 6 4.6231 -1.9864 -0.0001 10 8 4.3002 -3.1597 0.0005 11 7 5.9273 -1.6464 -0.0002 12 6 6.9562 -2.6893 0.0010 13 1 6.5992 -3.6364 -0.4037 14 6 8.2979 -2.2315 -0.5947 15 6 8.6832 -1.7784 0.8235 16 1 8.3916 -0.7525 1.0484 17 6 10.1173 -2.0712 1.1821 18 7 11.1152 -1.2381 1.0675 19 6 12.2418 -1.8380 1.4798 20 6 11.9303 -3.0906 1.8638 21 7 10.5827 -3.2390 1.6752 22 6 7.6907 -2.8312 1.3445 23 6 2.2446 -1.1601 -0.0004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3632 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.4930 2.8507 -1.0270 28 1 0.4267 2.2093 1.5961 29 1 4.1168 3.6864 0.2061 30 1 2.2231 5.0538 0.8855 31 1 6.1847 -0.7112 -0.0002 32 1 8.2030 -1.4101 -1.3048 33 1 8.9099 -3.0505 -0.9727 34 1 13.2264 -1.3944 1.4993 35 1 12.6125 -3.8348 2.2476 36 1 10.0596 -4.0343 1.8615 37 1 8.1366 -3.8141 1.4966 38 1 7.1053 -2.4939 2.1999 39 1 1.8019 -2.1452 -0.0001 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:09:23 Heat of formation + Delta-G solvation = 54.345080 kcal Electronic energy + Delta-G solvation = -23625.748271 eV Core-core repulsion = 20049.534423 eV Total energy + Delta-G solvation = -3576.213848 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10275 -41.33118 -40.09598 -39.17640 -37.26935 -34.68365 -33.44235 -32.13970 -30.56975 -30.19782 -27.14347 -26.84952 -25.72082 -24.44231 -22.61732 -22.01625 -21.78233 -20.63098 -20.03972 -19.56213 -18.90504 -17.70495 -17.31925 -17.02853 -16.49250 -16.30621 -16.09039 -15.88095 -15.58754 -15.41589 -15.12721 -14.62561 -14.57714 -14.51305 -14.40723 -13.94738 -13.65109 -13.46999 -13.46760 -13.08661 -12.95022 -12.55209 -12.43283 -12.23170 -11.92737 -11.76672 -11.55742 -11.30316 -11.04126 -11.01423 -10.66870 -10.31683 -9.68693 -9.42752 -9.34841 -5.06907 -0.68132 0.26819 0.69311 1.09124 1.11018 1.32124 1.54452 1.87406 1.89982 2.02575 2.12421 2.22226 3.25522 3.34927 3.37213 3.53009 3.60955 3.69950 3.76174 4.05583 4.10184 4.24142 4.26662 4.45116 4.51016 4.53488 4.58734 4.60190 4.63465 4.72808 4.82421 4.87565 4.92427 4.93132 4.98952 5.03100 5.14071 5.39758 5.41128 5.49197 5.79238 6.26643 6.48840 6.67318 6.95814 7.13383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.234 4.234 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.727 3.273 7 S 0.232 5.768 8 C -0.283 4.283 9 C 0.596 3.404 10 O -0.565 6.565 11 N -0.699 5.699 12 C 0.121 3.879 13 H 0.101 0.899 14 C -0.123 4.123 15 C -0.024 4.024 16 H 0.121 0.879 17 C 0.210 3.790 18 N -0.531 5.531 19 C -0.063 4.063 20 C -0.044 4.044 21 N -0.557 5.557 22 C -0.139 4.139 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.396 0.604 29 H -0.255 1.255 30 H -0.274 1.274 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.209 0.791 36 H 0.431 0.569 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -0.299 3.319 3.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.353 4.353 4 C -0.142 4.142 5 O -0.347 6.347 6 Si 0.629 3.371 7 S 0.501 5.499 8 C -0.403 4.403 9 C 0.383 3.617 10 O -0.446 6.446 11 N -0.350 5.350 12 C 0.016 3.984 13 H 0.119 0.881 14 C -0.162 4.162 15 C -0.044 4.044 16 H 0.139 0.861 17 C -0.054 4.054 18 N -0.251 5.251 19 C -0.210 4.210 20 C -0.178 4.178 21 N -0.162 5.162 22 C -0.178 4.178 23 C -0.087 4.087 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.139 0.861 28 H 0.246 0.754 29 H -0.180 1.180 30 H -0.200 1.200 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.194 0.806 35 H 0.225 0.775 36 H 0.272 0.728 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.004 1.534 2.404 3.486 hybrid contribution -1.286 -1.897 -0.220 2.302 sum 0.718 -0.362 2.184 2.327 Atomic orbital electron populations 1.20628 0.87871 1.02981 1.03584 1.18779 0.98992 0.90243 1.03159 1.24673 0.98713 1.01235 1.10726 1.24565 0.92580 0.94800 1.02256 1.86509 1.27533 1.90078 1.30571 0.94022 0.75985 0.77915 0.89145 1.82901 1.02711 0.96172 1.68115 1.24521 0.97742 0.98143 1.19900 1.17116 0.82258 0.87093 0.75216 1.90832 1.82227 1.19813 1.51683 1.45454 1.04379 1.10523 1.74643 1.21819 0.87001 0.92148 0.97437 0.88064 1.23359 0.94307 1.02738 0.95832 1.21129 0.84329 1.01513 0.97453 0.86124 1.23212 0.96946 0.83250 1.02031 1.70178 0.99553 1.32867 1.22511 1.22745 0.98288 0.93725 1.06282 1.23283 0.85022 1.00960 1.08543 1.43270 1.08825 1.14689 1.49411 1.23499 0.96599 0.99573 0.98119 1.20814 0.91206 1.00384 0.96299 0.89664 0.90223 0.92106 0.86058 0.75366 1.18038 1.19967 0.75303 0.89298 0.87933 0.80580 0.77458 0.72752 0.87752 0.89795 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.20 8.67 71.24 0.62 0.82 16 2 C -0.10 0.01 5.75 -21.05 -0.12 -0.11 16 3 C -0.23 0.46 5.54 24.68 0.14 0.59 16 4 C -0.03 0.11 2.76 71.24 0.20 0.31 16 5 O -0.54 2.17 9.85 -148.98 -1.47 0.70 16 6 Si 0.73 -3.40 31.31 68.60 2.15 -1.25 16 7 S 0.23 -0.62 19.78 -56.49 -1.12 -1.73 16 8 C -0.28 -0.66 6.45 24.08 0.16 -0.50 16 9 C 0.60 2.91 7.78 86.42 0.67 3.58 16 10 O -0.56 -7.06 16.44 -4.35 -0.07 -7.13 16 11 N -0.70 0.92 5.26 -444.09 -2.34 -1.42 16 12 C 0.12 -0.32 4.32 45.52 0.20 -0.13 16 13 H 0.10 0.04 7.46 -2.38 -0.02 0.02 16 14 C -0.12 0.53 7.38 31.12 0.23 0.76 16 15 C -0.02 0.08 4.17 -11.02 -0.05 0.03 16 16 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 17 C 0.21 0.42 7.36 138.12 1.02 1.44 16 18 N -0.53 -4.41 11.25 -188.13 -2.12 -6.53 16 19 C -0.06 -0.29 11.87 83.52 0.99 0.70 16 20 C -0.04 0.06 12.04 83.09 1.00 1.06 16 21 N -0.56 1.42 5.94 -186.28 -1.11 0.31 16 22 C -0.14 0.72 7.36 31.12 0.23 0.95 16 23 C -0.05 -0.14 9.80 21.72 0.21 0.07 16 24 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.08 -0.06 6.42 -2.39 -0.02 -0.08 16 26 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 27 H 0.12 -0.37 7.96 -2.38 -0.02 -0.39 16 28 H 0.40 -4.38 8.66 -74.06 -0.64 -5.02 16 29 H -0.25 0.40 7.09 99.48 0.71 1.10 16 30 H -0.27 -0.58 7.11 99.48 0.71 0.12 16 31 H 0.41 -2.21 7.82 -92.71 -0.72 -2.93 16 32 H 0.09 -0.41 8.14 -2.39 -0.02 -0.42 16 33 H 0.10 -0.47 8.09 -2.39 -0.02 -0.49 16 34 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.21 -1.75 8.06 -2.91 -0.02 -1.77 16 36 H 0.43 -3.73 7.53 -92.71 -0.70 -4.43 16 37 H 0.10 -0.88 6.64 -2.39 -0.02 -0.89 16 38 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 Total: 0.00 -21.86 340.73 -1.49 -23.35 By element: Atomic # 1 Polarization: -14.97 SS G_CDS: -0.91 Total: -15.88 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.49 Total: 9.57 kcal Atomic # 7 Polarization: -2.08 SS G_CDS: -5.56 Total: -7.63 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -1.54 Total: -6.42 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.15 Total: -1.25 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.12 Total: -1.73 kcal Total: -21.86 -1.49 -23.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.695 kcal (2) G-P(sol) polarization free energy of solvation -21.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds