Wall clock time and date at job start Tue Mar 9 2021 14:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.46916 * 2 1 4 4 C 1.50700 * 109.47014 * 240.00041 * 2 1 3 5 5 C 1.32771 * 124.71164 * 299.99749 * 4 2 1 6 6 C 1.44430 * 113.08130 * 180.02562 * 5 4 2 7 7 C 1.47190 * 123.45637 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00350 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08994 * 113.61814 * 270.88533 * 13 12 10 15 15 C 1.50702 * 113.69032 * 139.98725 * 13 12 10 16 16 N 1.30498 * 125.64994 * 167.48734 * 15 13 12 17 17 C 1.34126 * 109.25793 * 180.02562 * 16 15 13 18 18 C 1.34677 * 108.01739 * 0.02562 * 17 16 15 19 19 N 1.35039 * 125.64975 * 347.18823 * 15 13 12 20 20 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 21 21 C 1.36008 * 113.07892 * 0.26565 * 6 5 4 22 22 S 1.70448 * 110.81558 * 359.59242 * 21 6 5 23 23 H 0.96691 * 114.00069 * 299.99930 * 1 2 3 24 24 H 1.09002 * 109.47121 * 119.99701 * 2 1 3 25 25 H 1.48505 * 110.00074 * 178.68256 * 3 2 1 26 26 H 1.48498 * 110.00075 * 299.99862 * 3 2 1 27 27 H 1.08000 * 123.46039 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 29 29 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 30 30 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 31 31 H 1.07996 * 125.99365 * 180.02562 * 17 16 15 32 32 H 1.07999 * 126.58914 * 180.02562 * 18 17 16 33 33 H 0.97005 * 126.39710 * 0.02562 * 19 15 13 34 34 H 1.09000 * 113.61578 * 25.34726 * 20 10 9 35 35 H 1.09001 * 113.61682 * 156.17306 * 20 10 9 36 36 H 1.07992 * 124.58889 * 179.71676 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6689 -1.9763 -1.5327 6 6 2.2781 -2.4007 -2.7715 7 6 2.1354 -3.7580 -3.3228 8 8 1.4766 -4.5899 -2.7281 9 7 2.7346 -4.0791 -4.4866 10 6 2.5929 -5.4302 -5.0351 11 1 2.3862 -6.1782 -4.2697 12 6 1.6477 -5.5097 -6.2455 13 6 2.8767 -5.2242 -7.1246 14 1 3.0589 -4.1622 -7.2889 15 6 2.9092 -6.0276 -8.3992 16 7 3.7035 -5.8146 -9.4125 17 6 3.4532 -6.7209 -10.3689 18 6 2.4659 -7.5259 -9.9319 19 7 2.1252 -7.0907 -8.6797 20 6 3.7273 -5.8276 -5.9943 21 6 3.0015 -1.4189 -3.3737 22 16 2.9450 0.0205 -2.4626 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5138 0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5614 2.4678 -1.2085 27 1 1.0628 -2.6226 -0.9152 28 1 3.2602 -3.4158 -4.9607 29 1 1.2200 -6.5001 -6.4011 30 1 0.9005 -4.7164 -6.2688 31 1 3.9554 -6.7927 -11.3224 32 1 2.0308 -8.3585 -10.4647 33 1 1.4448 -7.4722 -8.1030 34 1 4.6590 -5.2910 -5.8149 35 1 3.8691 -6.9049 -6.0803 36 1 3.5374 -1.5351 -4.3041 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:09:26 Heat of formation + Delta-G solvation = 56.894125 kcal Electronic energy + Delta-G solvation = -21609.031059 eV Core-core repulsion = 18188.465365 eV Total energy + Delta-G solvation = -3420.565694 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12994 -41.42318 -39.66947 -38.56047 -37.17779 -34.70770 -33.46989 -31.98191 -30.53310 -27.03315 -26.88940 -26.78911 -25.24518 -22.66596 -22.12044 -21.80729 -20.62700 -20.57102 -19.07471 -18.69556 -18.37477 -18.18005 -17.02830 -16.38685 -16.31166 -16.07719 -15.79739 -15.55618 -15.43380 -14.96739 -14.60144 -14.48495 -14.32476 -14.03908 -13.93036 -13.78188 -13.58825 -13.43590 -12.68836 -12.57189 -12.36012 -12.11288 -11.94670 -11.56594 -11.19036 -11.07189 -11.04339 -10.50571 -10.29840 -10.00284 -9.62026 -9.37418 -5.19429 -0.46068 0.27309 0.62103 0.73060 1.06810 1.20143 1.60088 1.88182 1.93094 2.08633 2.15279 2.20043 3.23695 3.32044 3.33588 3.53943 3.67990 3.73322 3.79199 3.94647 4.03864 4.17514 4.21741 4.42469 4.49969 4.51429 4.56408 4.60937 4.61846 4.73691 4.82611 4.90264 4.91125 4.99479 5.06880 5.12164 5.42466 5.76699 6.34550 6.45605 6.84356 7.03442 7.10386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.049 4.049 3 Si 0.758 3.242 4 C -0.211 4.211 5 C -0.070 4.070 6 C -0.178 4.178 7 C 0.583 3.417 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.122 3.878 11 H 0.097 0.903 12 C -0.141 4.141 13 C -0.022 4.022 14 H 0.121 0.879 15 C 0.209 3.791 16 N -0.530 5.530 17 C -0.063 4.063 18 C -0.044 4.044 19 N -0.558 5.558 20 C -0.120 4.120 21 C -0.183 4.183 22 S 0.183 5.817 23 H 0.406 0.594 24 H 0.102 0.898 25 H -0.261 1.261 26 H -0.274 1.274 27 H 0.144 0.856 28 H 0.415 0.585 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.178 0.822 32 H 0.209 0.791 33 H 0.431 0.569 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 2.079 2.163 3.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.160 4.160 3 Si 0.659 3.341 4 C -0.327 4.327 5 C -0.099 4.099 6 C -0.195 4.195 7 C 0.370 3.630 8 O -0.455 6.455 9 N -0.346 5.346 10 C 0.016 3.984 11 H 0.115 0.885 12 C -0.180 4.180 13 C -0.042 4.042 14 H 0.139 0.861 15 C -0.055 4.055 16 N -0.251 5.251 17 C -0.210 4.210 18 C -0.179 4.179 19 N -0.163 5.163 20 C -0.159 4.159 21 C -0.321 4.321 22 S 0.448 5.552 23 H 0.258 0.742 24 H 0.119 0.881 25 H -0.187 1.187 26 H -0.200 1.200 27 H 0.161 0.839 28 H 0.252 0.748 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.195 0.805 32 H 0.226 0.774 33 H 0.272 0.728 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.444 3.820 1.313 4.289 hybrid contribution -1.300 -2.651 -0.241 2.962 sum 0.144 1.169 1.071 1.592 Atomic orbital electron populations 1.86465 1.16986 1.82524 1.51470 1.24294 0.86006 1.10860 0.94867 0.93626 0.79109 0.75299 0.86024 1.23807 1.08208 0.97776 1.02949 1.21052 0.98564 0.94859 0.95388 1.20161 1.06022 0.94884 0.98480 1.17728 0.78329 0.86417 0.80503 1.90795 1.42085 1.51472 1.61118 1.45384 1.52680 1.13937 1.22580 1.21786 0.97167 0.84328 0.95074 0.88453 1.23502 0.96519 1.03728 0.94288 1.21115 0.98257 0.99080 0.85794 0.86088 1.23236 0.92836 0.91562 0.97894 1.70170 1.25669 1.27132 1.02099 1.22753 1.01302 0.96145 1.00810 1.23294 1.02546 1.04615 0.87397 1.43282 1.31785 1.25456 1.15733 1.23330 0.97769 1.02771 0.92010 1.26143 1.02913 0.97478 1.05562 1.83225 1.46593 1.12261 1.13086 0.74236 0.88073 1.18656 1.19955 0.83858 0.74766 0.87960 0.90299 0.80498 0.77442 0.72796 0.88975 0.88057 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.01 12.82 -148.98 -1.91 -1.92 16 2 C -0.05 0.05 2.94 71.24 0.21 0.26 16 3 Si 0.76 -2.94 30.91 68.60 2.12 -0.82 16 4 C -0.21 -0.90 5.72 24.51 0.14 -0.76 16 5 C -0.07 -0.50 9.91 22.67 0.22 -0.28 16 6 C -0.18 -0.86 5.98 -19.87 -0.12 -0.98 16 7 C 0.58 3.85 7.79 86.59 0.67 4.53 16 8 O -0.57 -8.58 16.42 -4.16 -0.07 -8.65 16 9 N -0.69 0.73 5.24 -443.50 -2.32 -1.59 16 10 C 0.12 -0.22 4.30 45.52 0.20 -0.03 16 11 H 0.10 0.16 7.50 -2.39 -0.02 0.14 16 12 C -0.14 0.53 7.36 31.12 0.23 0.76 16 13 C -0.02 0.06 4.18 -11.01 -0.05 0.01 16 14 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 15 C 0.21 0.57 7.36 138.13 1.02 1.59 16 16 N -0.53 -4.70 11.25 -188.13 -2.12 -6.82 16 17 C -0.06 -0.32 11.87 83.53 0.99 0.67 16 18 C -0.04 0.02 12.04 83.09 1.00 1.02 16 19 N -0.56 0.91 5.94 -186.27 -1.11 -0.19 16 20 C -0.12 0.49 7.37 31.12 0.23 0.72 16 21 C -0.18 0.15 10.38 67.30 0.70 0.85 16 22 S 0.18 0.23 20.18 -56.49 -1.14 -0.91 16 23 H 0.41 -4.44 8.74 -74.06 -0.65 -5.08 16 24 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 25 H -0.26 0.01 7.11 99.48 0.71 0.72 16 26 H -0.27 -0.71 7.11 99.48 0.71 -0.01 16 27 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 28 H 0.41 -2.82 7.20 -92.71 -0.67 -3.49 16 29 H 0.10 -0.69 6.65 -2.39 -0.02 -0.71 16 30 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 32 H 0.21 -1.61 8.06 -2.91 -0.02 -1.63 16 33 H 0.43 -3.25 7.54 -92.70 -0.70 -3.95 16 34 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.10 -0.42 8.10 -2.39 -0.02 -0.44 16 36 H 0.21 -1.79 7.01 -2.91 -0.02 -1.81 16 Total: 0.00 -26.83 323.46 -1.92 -28.75 By element: Atomic # 1 Polarization: -15.41 SS G_CDS: -0.82 Total: -16.23 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.45 Total: 8.37 kcal Atomic # 7 Polarization: -3.05 SS G_CDS: -5.55 Total: -8.60 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.98 Total: -10.57 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.12 Total: -0.82 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.14 Total: -0.91 kcal Total: -26.83 -1.92 -28.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.644 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds