Wall clock time and date at job start Tue Mar 9 2021 15:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37885 * 126.45767 * 2 1 4 4 C 1.46645 * 126.23457 * 0.02562 * 3 2 1 5 5 O 1.21721 * 120.00108 * 359.71092 * 4 3 2 6 6 N 1.34780 * 120.00136 * 179.71278 * 4 3 2 7 7 C 1.40036 * 119.99969 * 184.61504 * 6 4 3 8 8 C 1.38864 * 120.01798 * 324.90346 * 7 6 4 9 9 C 1.38081 * 119.98264 * 180.30066 * 8 7 6 10 10 C 1.38730 * 120.01533 * 359.44242 * 9 8 7 11 11 O 1.35976 * 119.98100 * 180.27987 * 10 9 8 12 12 Si 1.63097 * 113.99740 * 270.27296 * 11 10 9 13 13 C 1.86297 * 109.47492 * 300.00180 * 12 11 10 14 14 C 1.86303 * 109.47160 * 60.00257 * 12 11 10 15 15 C 1.86302 * 109.46888 * 180.02562 * 12 11 10 16 16 C 1.53000 * 109.47068 * 60.00204 * 15 12 11 17 17 C 1.53002 * 109.47184 * 180.02562 * 15 12 11 18 18 C 1.53000 * 109.47408 * 300.00119 * 15 12 11 19 19 C 1.38722 * 120.03020 * 0.55327 * 10 9 8 20 20 C 1.38081 * 120.02173 * 359.72527 * 19 10 9 21 21 N 1.37653 * 107.53256 * 179.73428 * 3 2 1 22 22 C 1.35553 * 108.64255 * 0.26572 * 21 3 2 23 23 C 1.50694 * 125.56298 * 179.97438 * 22 21 3 24 24 O 1.42908 * 109.46873 * 120.02522 * 23 22 21 25 25 Si 1.86296 * 109.47371 * 0.02894 * 23 22 21 26 26 H 1.48501 * 109.47301 * 59.99607 * 25 23 22 27 27 H 1.48497 * 109.47438 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46929 * 299.99622 * 25 23 22 29 29 C 1.35458 * 108.87117 * 359.97438 * 22 21 3 30 30 H 1.09006 * 109.47228 * 89.99862 * 1 2 3 31 31 H 1.09000 * 109.47579 * 209.99681 * 1 2 3 32 32 H 1.09002 * 109.47161 * 329.99729 * 1 2 3 33 33 H 0.96998 * 120.00037 * 4.61401 * 6 4 3 34 34 H 1.07999 * 120.00452 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.99634 * 179.71816 * 9 8 7 36 36 H 1.09004 * 109.47180 * 59.99674 * 13 12 11 37 37 H 1.08992 * 109.47585 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47061 * 300.00235 * 13 12 11 39 39 H 1.09000 * 109.46900 * 60.00129 * 14 12 11 40 40 H 1.08996 * 109.46984 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.46985 * 299.99957 * 14 12 11 42 42 H 1.09005 * 109.47339 * 59.99777 * 16 15 12 43 43 H 1.09000 * 109.47363 * 179.97438 * 16 15 12 44 44 H 1.08994 * 109.47437 * 300.00219 * 16 15 12 45 45 H 1.09000 * 109.47120 * 60.00117 * 17 15 12 46 46 H 1.09000 * 109.47457 * 180.02562 * 17 15 12 47 47 H 1.09005 * 109.46860 * 300.00001 * 17 15 12 48 48 H 1.09005 * 109.46962 * 59.99846 * 18 15 12 49 49 H 1.09000 * 109.46841 * 179.97438 * 18 15 12 50 50 H 1.09000 * 109.47086 * 300.00000 * 18 15 12 51 51 H 1.08010 * 119.98744 * 179.70020 * 19 10 9 52 52 H 1.07993 * 120.00980 * 179.97438 * 20 19 10 53 53 H 0.96999 * 125.68142 * 180.29745 * 21 3 2 54 54 H 1.09002 * 109.47271 * 240.02237 * 23 22 21 55 55 H 0.96691 * 113.99827 * 300.00279 * 24 23 22 56 56 H 1.07996 * 126.06603 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1090 0.0000 4 6 1.8901 2.5091 0.0005 5 8 0.7026 2.7765 -0.0043 6 7 2.8039 3.4997 0.0063 7 6 2.3897 4.8338 0.1044 8 6 1.2082 5.2407 -0.5012 9 6 0.8037 6.5577 -0.4093 10 6 1.5713 7.4718 0.2977 11 8 1.1693 8.7673 0.3925 12 14 1.7236 9.7233 -0.8070 13 6 3.5865 9.7232 -0.7909 14 6 1.1167 9.0781 -2.4460 15 6 1.1011 11.4609 -0.5540 16 6 1.6000 11.9905 0.7919 17 6 1.6204 12.3577 -1.6796 18 6 -0.4289 11.4616 -0.5669 19 6 2.7517 7.0660 0.9030 20 6 3.1605 5.7506 0.8071 21 7 3.6285 0.6626 0.0061 22 6 3.6218 -0.6929 0.0038 23 6 4.8433 -1.5754 0.0082 24 8 4.8290 -2.4027 1.1734 25 14 6.3753 -0.5154 0.0182 26 1 6.3778 0.3396 1.2324 27 1 7.5790 -1.3850 0.0232 28 1 6.3901 0.3444 -1.1926 29 6 2.3379 -1.1248 -0.0030 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.7485 3.2886 -0.0575 34 1 0.6082 4.5282 -1.0477 35 1 -0.1129 6.8754 -0.8840 36 1 3.9510 8.7066 -0.9386 37 1 3.9568 10.3624 -1.5922 38 1 3.9415 10.1007 0.1680 39 1 0.0267 9.0783 -2.4555 40 1 1.4867 9.7173 -3.2476 41 1 1.4812 8.0616 -2.5938 42 1 2.6900 11.9900 0.8011 43 1 1.2362 13.0073 0.9398 44 1 1.2297 11.3516 1.5936 45 1 1.2647 11.9803 -2.6383 46 1 1.2567 13.3745 -1.5314 47 1 2.7105 12.3573 -1.6709 48 1 -0.7992 10.8226 0.2348 49 1 -0.7929 12.4782 -0.4184 50 1 -0.7843 11.0844 -1.5258 51 1 3.3513 7.7793 1.4491 52 1 4.0797 5.4349 1.2781 53 1 4.4192 1.2244 0.0116 54 1 4.8414 -2.2030 -0.8830 55 1 4.8298 -1.9102 2.0055 56 1 2.0136 -2.1549 -0.0066 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16978792_13940406.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:12:35 Heat of formation + Delta-G solvation = -81.316971 kcal Electronic energy + Delta-G solvation = -34119.151339 eV Core-core repulsion = 29731.590397 eV Total energy + Delta-G solvation = -4387.560943 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 390.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.77115 -41.44122 -40.15563 -37.91958 -37.64554 -36.88298 -35.53096 -33.70822 -32.11869 -31.68603 -29.78373 -29.20120 -29.09143 -28.38135 -27.87364 -27.41975 -26.79215 -24.25537 -23.69928 -22.26800 -21.64206 -20.55159 -20.52301 -19.91040 -18.95520 -18.48528 -17.96766 -17.06236 -16.94609 -16.61263 -16.46847 -16.03735 -15.94894 -15.69670 -15.45646 -15.11213 -14.89899 -14.80844 -14.77757 -14.48498 -14.46401 -14.21931 -14.02445 -13.86033 -13.73012 -13.62006 -13.50097 -13.44648 -13.39420 -13.27929 -13.18814 -12.97695 -12.95909 -12.92486 -12.59473 -12.43219 -12.28361 -12.22562 -12.04413 -11.94919 -11.68816 -11.66570 -11.29618 -11.01948 -10.53069 -10.52135 -10.13281 -10.03340 -9.85849 -9.34937 -8.92395 -0.09465 0.29695 0.34292 1.01973 1.33327 1.34108 1.37540 1.55802 1.65784 1.72487 1.82475 1.96868 1.99084 2.11549 2.36672 2.73938 3.42361 3.59819 3.68845 3.88567 3.92995 4.07166 4.08697 4.09394 4.17396 4.20926 4.34980 4.44119 4.45712 4.53775 4.57133 4.69349 4.70817 4.71728 4.76517 4.77733 4.80214 4.81612 4.83283 4.86670 4.97667 4.99623 5.06953 5.07262 5.10455 5.18113 5.21980 5.29151 5.32619 5.35937 5.37826 5.39847 5.42253 5.51543 5.56171 5.60462 5.60997 5.80506 6.08292 6.16347 6.30994 6.65321 6.89233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.080 4.080 3 C -0.067 4.067 4 C 0.589 3.411 5 O -0.537 6.537 6 N -0.662 5.662 7 C 0.114 3.886 8 C -0.107 4.107 9 C -0.149 4.149 10 C 0.111 3.889 11 O -0.572 6.572 12 Si 1.296 2.704 13 C -0.506 4.506 14 C -0.514 4.514 15 C -0.375 4.375 16 C -0.139 4.139 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.110 4.110 21 N -0.529 5.529 22 C 0.033 3.967 23 C -0.055 4.055 24 O -0.544 6.544 25 Si 0.958 3.042 26 H -0.240 1.240 27 H -0.259 1.259 28 H -0.244 1.244 29 C -0.186 4.186 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.154 0.846 52 H 0.162 0.838 53 H 0.422 0.578 54 H 0.141 0.859 55 H 0.391 0.609 56 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 0.072 -0.739 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.179 4.179 4 C 0.380 3.620 5 O -0.414 6.414 6 N -0.308 5.308 7 C 0.020 3.980 8 C -0.128 4.128 9 C -0.169 4.169 10 C 0.067 3.933 11 O -0.526 6.526 12 Si 1.430 2.570 13 C -0.610 4.610 14 C -0.616 4.616 15 C -0.419 4.419 16 C -0.197 4.197 17 C -0.198 4.198 18 C -0.198 4.198 19 C -0.161 4.161 20 C -0.130 4.130 21 N -0.131 5.131 22 C -0.084 4.084 23 C -0.166 4.166 24 O -0.350 6.350 25 Si 0.779 3.221 26 H -0.163 1.163 27 H -0.182 1.182 28 H -0.167 1.167 29 C -0.210 4.210 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.258 0.742 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.172 0.828 52 H 0.179 0.821 53 H 0.263 0.737 54 H 0.158 0.842 55 H 0.240 0.760 56 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.999 0.411 -0.915 7.070 hybrid contribution 0.039 0.492 -0.002 0.493 sum 7.037 0.903 -0.917 7.154 Atomic orbital electron populations 1.20352 0.89194 1.02888 1.02405 1.20255 0.96324 0.91329 1.01029 1.19817 0.84405 0.92344 1.21366 1.17250 0.85539 0.83553 0.75707 1.90837 1.17261 1.83212 1.50078 1.43189 1.10715 1.03732 1.73179 1.17788 0.96788 0.83703 0.99694 1.21144 0.96854 0.95465 0.99302 1.21303 1.01411 0.92908 1.01241 1.18212 0.93598 0.83495 0.98009 1.83824 1.78222 1.21953 1.68604 0.76757 0.63857 0.60607 0.55796 1.26959 1.23467 1.05069 1.05508 1.27088 1.06856 1.06906 1.20797 1.25793 1.00375 1.16851 0.98851 1.21575 1.01412 1.01073 0.95593 1.21612 1.01495 0.99417 0.97316 1.21584 0.94300 1.02006 1.01892 1.21335 0.96011 0.96999 1.01738 1.21035 1.01629 0.92097 0.98277 1.41957 1.06770 1.06690 1.57684 1.21217 0.98261 0.82509 1.06430 1.24692 1.00059 0.98636 0.93175 1.86554 1.96722 1.35736 1.16031 0.85568 0.76255 0.78468 0.81849 1.16340 1.18227 1.16721 1.20786 0.90913 0.99186 1.10100 0.91254 0.90504 0.91809 0.74246 0.85151 0.84561 0.90924 0.89763 0.90271 0.91060 0.89790 0.91467 0.91570 0.92898 0.92692 0.91826 0.92713 0.91431 0.92798 0.92804 0.92061 0.82799 0.82060 0.73662 0.84174 0.75977 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 9.83 71.24 0.70 0.25 16 2 C -0.08 -0.37 6.21 -19.56 -0.12 -0.49 16 3 C -0.07 -0.19 7.05 40.34 0.28 0.10 16 4 C 0.59 3.09 7.63 86.44 0.66 3.75 16 5 O -0.54 -6.50 12.24 -4.42 -0.05 -6.56 16 6 N -0.66 0.36 5.34 -306.96 -1.64 -1.28 16 7 C 0.11 0.29 6.30 38.13 0.24 0.53 16 8 C -0.11 -0.68 8.69 22.38 0.19 -0.49 16 9 C -0.15 -0.79 8.73 22.35 0.20 -0.60 16 10 C 0.11 0.43 4.64 22.50 0.10 0.53 16 11 O -0.57 -1.96 8.52 -93.28 -0.79 -2.75 16 12 Si 1.30 -1.49 8.27 68.60 0.57 -0.92 16 13 C -0.51 1.31 8.31 113.37 0.94 2.25 16 14 C -0.51 0.00 8.30 113.37 0.94 0.94 16 15 C -0.37 0.18 0.53 -10.79 -0.01 0.17 16 16 C -0.14 0.02 7.85 71.98 0.56 0.58 16 17 C -0.14 0.27 7.85 71.98 0.56 0.84 16 18 C -0.14 -0.14 7.85 71.98 0.56 0.43 16 19 C -0.14 -0.05 8.76 22.35 0.20 0.14 16 20 C -0.11 0.16 9.96 22.38 0.22 0.38 16 21 N -0.53 1.85 5.47 -171.94 -0.94 0.91 16 22 C 0.03 -0.08 6.12 41.34 0.25 0.17 16 23 C -0.05 0.33 2.98 71.23 0.21 0.55 16 24 O -0.54 2.12 12.87 -148.98 -1.92 0.20 16 25 Si 0.96 -7.76 26.24 68.60 1.80 -5.96 16 26 H -0.24 2.20 7.11 99.48 0.71 2.90 16 27 H -0.26 0.97 7.11 99.48 0.71 1.67 16 28 H -0.24 2.02 7.11 99.48 0.71 2.72 16 29 C -0.19 -0.26 10.64 22.01 0.23 -0.02 16 30 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.06 0.55 6.49 -2.39 -0.02 0.54 16 33 H 0.42 -3.41 7.96 -92.71 -0.74 -4.15 16 34 H 0.13 1.19 6.21 -2.91 -0.02 1.17 16 35 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.07 -0.18 7.38 -2.38 -0.02 -0.20 16 37 H 0.08 -0.33 7.79 -2.39 -0.02 -0.34 16 38 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 39 H 0.07 0.04 7.79 -2.39 -0.02 0.02 16 40 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 41 H 0.07 0.07 7.36 -2.39 -0.02 0.05 16 42 H 0.07 -0.16 7.79 -2.38 -0.02 -0.17 16 43 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.05 0.05 7.96 -2.39 -0.02 0.03 16 45 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 46 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 47 H 0.07 -0.27 7.79 -2.38 -0.02 -0.29 16 48 H 0.05 0.11 7.97 -2.38 -0.02 0.10 16 49 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.06 -0.02 7.80 -2.39 -0.02 -0.04 16 51 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 52 H 0.16 -1.31 8.06 -2.91 -0.02 -1.33 16 53 H 0.42 -4.00 5.99 -92.71 -0.55 -4.56 16 54 H 0.14 -1.10 7.96 -2.39 -0.02 -1.12 16 55 H 0.39 -3.92 8.70 -74.06 -0.64 -4.57 16 56 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -17.96 447.75 3.69 -14.27 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: -0.28 Total: -7.92 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.95 Total: 10.00 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -2.58 Total: -0.37 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -2.77 Total: -9.10 kcal Atomic # 14 Polarization: -9.25 SS G_CDS: 2.37 Total: -6.88 kcal Total: -17.96 3.69 -14.27 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16978792_13940406.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.046 kcal (2) G-P(sol) polarization free energy of solvation -17.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds