Wall clock time and date at job start Tue Mar 9 2021 15:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36543 * 126.64293 * 2 1 4 4 C 1.46652 * 125.99135 * 359.97438 * 3 2 1 5 5 O 1.21707 * 119.99848 * 352.67642 * 4 3 2 6 6 N 1.34774 * 120.00612 * 172.68036 * 4 3 2 7 7 C 1.46503 * 119.99874 * 3.45971 * 6 4 3 8 8 C 1.46495 * 120.00126 * 183.46147 * 6 4 3 9 9 H 1.09001 * 112.85291 * 348.80142 * 8 6 4 10 10 C 1.53792 * 113.61450 * 119.99948 * 8 6 4 11 11 C 1.53784 * 87.07866 * 139.97760 * 10 8 6 12 12 H 1.09004 * 113.60928 * 220.01670 * 11 10 8 13 13 O 1.42904 * 113.61109 * 89.20408 * 11 10 8 14 14 C 1.53772 * 87.08386 * 334.56929 * 11 10 8 15 15 O 1.34915 * 108.02312 * 179.71632 * 3 2 1 16 16 C 1.33927 * 109.38349 * 0.43364 * 15 3 2 17 17 C 1.50701 * 125.61506 * 179.82397 * 16 15 3 18 18 O 1.42900 * 109.47259 * 269.69381 * 17 16 15 19 19 C 1.35902 * 116.99838 * 180.02562 * 18 17 16 20 20 C 1.38731 * 120.05366 * 179.97438 * 19 18 17 21 21 C 1.38151 * 119.94433 * 180.02562 * 20 19 18 22 22 C 1.38267 * 120.05426 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.94285 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.47087 * 299.99782 * 23 22 21 25 25 Si 1.86304 * 109.46809 * 180.02562 * 23 22 21 26 26 C 1.38266 * 120.11202 * 0.24893 * 22 21 20 27 27 C 1.38148 * 120.05227 * 359.45608 * 26 22 21 28 28 C 1.35125 * 108.76996 * 359.56291 * 16 15 3 29 29 H 1.08999 * 109.46919 * 269.99619 * 1 2 3 30 30 H 1.08996 * 109.47198 * 30.00010 * 1 2 3 31 31 H 1.09001 * 109.46896 * 150.00244 * 1 2 3 32 32 H 1.08998 * 109.47056 * 83.94288 * 7 6 4 33 33 H 1.08995 * 109.47248 * 203.94529 * 7 6 4 34 34 H 1.09001 * 109.46934 * 323.94991 * 7 6 4 35 35 H 1.08998 * 113.61108 * 254.52736 * 10 8 6 36 36 H 1.09000 * 113.61138 * 25.34608 * 10 8 6 37 37 H 0.96698 * 113.99864 * 179.97438 * 13 11 10 38 38 H 1.09005 * 113.61353 * 270.88620 * 14 11 10 39 39 H 1.08995 * 113.61865 * 139.98538 * 14 11 10 40 40 H 1.09006 * 109.46892 * 149.69554 * 17 16 15 41 41 H 1.08994 * 109.47204 * 29.69786 * 17 16 15 42 42 H 1.07998 * 120.02816 * 359.97438 * 20 19 18 43 43 H 1.07991 * 119.97061 * 179.97438 * 21 20 19 44 44 H 1.08994 * 109.47321 * 59.99795 * 23 22 21 45 45 H 0.96688 * 114.00205 * 180.02562 * 24 23 22 46 46 H 1.48496 * 110.00210 * 59.99861 * 25 23 22 47 47 H 1.48500 * 109.99414 * 181.31704 * 25 23 22 48 48 H 1.07999 * 119.97501 * 179.70426 * 26 22 21 49 49 H 1.08002 * 120.02669 * 180.24706 * 27 26 22 50 50 H 1.08002 * 126.44497 * 180.22516 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8842 2.4953 -0.0005 5 8 0.7049 2.7640 -0.1354 6 7 2.7878 3.4841 0.1482 7 6 4.2152 3.1652 0.2344 8 6 2.3428 4.8778 0.2238 9 1 1.2937 5.0023 -0.0445 10 6 2.7301 5.5778 1.5373 11 6 3.0415 6.8229 0.6901 12 1 3.9366 7.3562 1.0105 13 8 1.9174 7.6858 0.5063 14 6 3.2838 5.8644 -0.4876 15 8 3.6005 0.6648 0.0064 16 6 3.6184 -0.6743 0.0008 17 6 4.8551 -1.5355 0.0013 18 8 5.2464 -1.8080 -1.3458 19 6 6.3518 -2.5783 -1.5233 20 6 6.7880 -2.8828 -2.8046 21 6 7.9117 -3.6666 -2.9825 22 6 8.6011 -4.1479 -1.8848 23 6 9.8262 -5.0031 -2.0817 24 8 9.4734 -6.1797 -2.8118 25 14 10.5187 -5.4875 -0.4214 26 6 8.1651 -3.8505 -0.6068 27 6 7.0455 -3.0622 -0.4237 28 6 2.3449 -1.1262 0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.6254 3.0610 -0.7700 33 1 4.7356 3.9670 0.7581 34 1 4.3463 2.2302 0.7792 35 1 1.8935 5.7139 2.2226 36 1 3.6068 5.1460 2.0200 37 1 2.1071 8.4709 -0.0254 38 1 4.3128 5.5119 -0.5591 39 1 2.8943 6.2318 -1.4370 40 1 4.6445 -2.4734 0.5153 41 1 5.6616 -1.0127 0.5153 42 1 6.2491 -2.5081 -3.6623 43 1 8.2514 -3.9042 -3.9796 44 1 10.5759 -4.4411 -2.6386 45 1 10.2149 -6.7783 -2.9753 46 1 9.5058 -6.2546 0.3472 47 1 11.7454 -6.3047 -0.6018 48 1 8.7025 -4.2316 0.2490 49 1 6.7077 -2.8269 0.5748 50 1 2.0308 -2.1595 0.0001 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16982422_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:37:17 Heat of formation + Delta-G solvation = -60.406539 kcal Electronic energy + Delta-G solvation = -33388.625322 eV Core-core repulsion = 28737.550851 eV Total energy + Delta-G solvation = -4651.074471 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.99601 -41.45927 -41.23149 -39.71881 -39.14691 -37.37487 -36.93912 -35.33984 -34.58726 -33.16084 -32.04008 -31.60606 -29.01453 -28.45393 -28.22344 -26.81569 -26.20861 -25.40374 -23.99279 -22.67149 -22.48075 -21.99321 -20.64225 -20.41632 -19.44733 -18.81650 -18.54321 -18.39319 -17.91240 -17.51274 -17.41155 -16.91171 -16.78117 -16.51638 -16.20251 -16.01004 -15.68310 -15.47712 -15.30820 -14.84851 -14.65542 -14.47654 -14.45130 -14.23749 -14.08387 -14.01200 -13.98829 -13.82275 -13.59743 -13.54516 -13.49108 -13.40412 -12.98029 -12.90423 -12.82076 -12.49409 -12.27857 -12.11406 -11.89652 -11.73520 -11.41873 -11.29102 -10.83661 -10.79477 -10.47647 -10.01947 -10.01417 -9.61872 -9.20681 -4.91695 -0.28334 0.28452 0.32824 0.93718 1.30076 1.32977 1.61900 1.82622 1.89375 1.96961 2.36525 2.63436 3.06819 3.21486 3.41991 3.44200 3.50662 3.61529 3.61951 3.76210 3.76806 3.84151 3.99325 3.99915 4.05945 4.09382 4.11166 4.28230 4.31348 4.38503 4.44381 4.47988 4.48435 4.50418 4.57229 4.62509 4.67837 4.71045 4.74770 4.81742 4.91123 4.94000 4.96015 4.98646 5.05626 5.10516 5.17572 5.26614 5.28534 5.41167 5.52527 5.69243 5.70165 6.10478 6.30061 6.60515 6.78330 6.85769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.097 4.097 3 C -0.091 4.091 4 C 0.593 3.407 5 O -0.553 6.553 6 N -0.593 5.593 7 C 0.067 3.933 8 C 0.114 3.886 9 H 0.093 0.907 10 C -0.144 4.144 11 C 0.087 3.913 12 H 0.104 0.896 13 O -0.575 6.575 14 C -0.169 4.169 15 O -0.148 6.148 16 C 0.008 3.992 17 C 0.136 3.864 18 O -0.326 6.326 19 C 0.125 3.875 20 C -0.163 4.163 21 C -0.062 4.062 22 C -0.124 4.124 23 C -0.083 4.083 24 O -0.560 6.560 25 Si 0.764 3.236 26 C -0.079 4.079 27 C -0.200 4.200 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.401 0.599 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.093 0.907 45 H 0.394 0.606 46 H -0.297 1.297 47 H -0.290 1.290 48 H 0.148 0.852 49 H 0.163 0.837 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 1.343 3.009 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.143 4.143 4 C 0.382 3.618 5 O -0.434 6.434 6 N -0.323 5.323 7 C -0.074 4.074 8 C 0.011 3.989 9 H 0.111 0.889 10 C -0.182 4.182 11 C 0.028 3.972 12 H 0.121 0.879 13 O -0.384 6.384 14 C -0.207 4.207 15 O -0.044 6.044 16 C -0.044 4.044 17 C 0.062 3.938 18 O -0.241 6.241 19 C 0.080 3.920 20 C -0.182 4.182 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.192 4.192 24 O -0.370 6.370 25 Si 0.670 3.330 26 C -0.097 4.097 27 C -0.218 4.218 28 C -0.207 4.207 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.252 0.748 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.111 0.889 45 H 0.244 0.756 46 H -0.225 1.225 47 H -0.218 1.218 48 H 0.166 0.834 49 H 0.180 0.820 50 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.894 0.993 3.705 8.777 hybrid contribution -0.051 -0.735 -1.403 1.585 sum 7.843 0.258 2.303 8.178 Atomic orbital electron populations 1.20462 0.87748 1.03809 1.03327 1.20953 0.98316 0.91438 0.99264 1.21714 0.81954 0.94463 1.16147 1.16926 0.85353 0.82694 0.76780 1.90835 1.17665 1.82656 1.52277 1.47874 1.08125 1.06037 1.70263 1.22214 0.78489 1.03363 1.03379 1.22750 0.99757 0.78039 0.98370 0.88894 1.23615 1.03339 0.94733 0.96524 1.22545 0.89548 0.89972 0.95177 0.87867 1.86456 1.36781 1.38994 1.76197 1.24126 1.01072 0.96195 0.99304 1.84215 1.27452 1.21860 1.70904 1.22500 0.96841 0.80977 1.04083 1.21258 0.91758 0.98074 0.82716 1.86110 1.42308 1.66368 1.29282 1.19057 0.86504 0.91785 0.94607 1.20626 0.99044 1.02953 0.95533 1.20926 0.93341 0.94300 0.99460 1.19438 0.98410 1.00731 0.93830 1.24991 0.98328 0.87947 1.07913 1.86545 1.40451 1.34119 1.75916 0.94261 0.75790 0.86823 0.76117 1.21003 0.95593 0.96742 0.96312 1.21460 0.98208 1.03064 0.99084 1.21858 0.91077 1.01010 1.06768 0.90148 0.91339 0.89450 0.91529 0.87564 0.89802 0.91635 0.86193 0.74847 0.86502 0.90551 0.85625 0.87240 0.84942 0.84793 0.88895 0.75598 1.22490 1.21774 0.83450 0.81993 0.80229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 9.90 71.24 0.71 0.16 16 2 C -0.10 -0.65 6.20 -19.74 -0.12 -0.77 16 3 C -0.09 -0.72 6.77 24.07 0.16 -0.55 16 4 C 0.59 6.26 7.64 86.44 0.66 6.92 16 5 O -0.55 -9.42 14.20 -4.37 -0.06 -9.49 16 6 N -0.59 -2.52 3.08 -824.36 -2.54 -5.06 16 7 C 0.07 -0.20 8.35 127.77 1.07 0.87 16 8 C 0.11 0.42 4.15 45.52 0.19 0.61 16 9 H 0.09 0.99 7.21 -2.39 -0.02 0.97 16 10 C -0.14 0.03 7.43 31.13 0.23 0.26 16 11 C 0.09 -0.25 5.27 31.12 0.16 -0.08 16 12 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 13 O -0.58 -0.55 13.59 -148.98 -2.03 -2.57 16 14 C -0.17 0.44 7.31 31.12 0.23 0.66 16 15 O -0.15 -0.53 7.29 -5.02 -0.04 -0.56 16 16 C 0.01 0.01 6.94 24.97 0.17 0.18 16 17 C 0.14 -0.63 5.27 71.24 0.38 -0.26 16 18 O -0.33 -0.52 10.12 -92.45 -0.94 -1.46 16 19 C 0.13 0.16 6.69 22.51 0.15 0.31 16 20 C -0.16 -0.46 9.99 22.37 0.22 -0.24 16 21 C -0.06 -0.15 9.60 22.26 0.21 0.07 16 22 C -0.12 -0.13 5.42 -19.85 -0.11 -0.24 16 23 C -0.08 0.13 2.81 71.24 0.20 0.33 16 24 O -0.56 -0.94 12.74 -148.98 -1.90 -2.84 16 25 Si 0.76 -2.62 29.78 68.60 2.04 -0.57 16 26 C -0.08 0.13 8.66 22.26 0.19 0.33 16 27 C -0.20 0.54 9.04 22.37 0.20 0.74 16 28 C -0.19 -0.37 10.73 22.07 0.24 -0.14 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.71 6.32 -2.39 -0.02 0.70 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.11 -0.91 6.11 -2.39 -0.01 -0.92 16 34 H 0.08 -0.21 5.41 -2.39 -0.01 -0.22 16 35 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.12 -0.59 7.01 -2.39 -0.02 -0.61 16 37 H 0.40 -3.13 9.12 -74.06 -0.68 -3.81 16 38 H 0.12 -0.79 6.58 -2.38 -0.02 -0.81 16 39 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.13 -1.22 7.66 -2.38 -0.02 -1.23 16 41 H 0.11 -1.01 7.66 -2.39 -0.02 -1.03 16 42 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.13 0.13 8.06 -2.92 -0.02 0.10 16 44 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 45 H 0.39 -2.43 8.74 -74.07 -0.65 -3.07 16 46 H -0.30 -1.06 7.11 99.48 0.71 -0.35 16 47 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 48 H 0.15 -0.89 4.87 -2.91 -0.01 -0.90 16 49 H 0.16 -1.51 6.30 -2.91 -0.02 -1.53 16 50 H 0.18 -0.52 8.06 -2.91 -0.02 -0.55 16 Total: 0.00 -26.49 407.17 -0.59 -27.07 By element: Atomic # 1 Polarization: -13.41 SS G_CDS: -0.28 Total: -13.69 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.14 Total: 9.17 kcal Atomic # 7 Polarization: -2.52 SS G_CDS: -2.54 Total: -5.06 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -4.96 Total: -16.92 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.04 Total: -0.57 kcal Total: -26.49 -0.59 -27.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16982422_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.334 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds