Wall clock time and date at job start Tue Mar 9 2021 15:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 O 1.42899 * 109.47143 * 180.27800 * 5 3 2 7 7 C 1.35901 * 116.99988 * 179.97438 * 6 5 3 8 8 C 1.38719 * 120.05341 * 179.97438 * 7 6 5 9 9 N 1.48003 * 120.02702 * 359.96367 * 8 7 6 10 10 O 1.21806 * 119.99540 * 179.97438 * 9 8 7 11 11 O 1.21794 * 120.00085 * 359.97438 * 9 8 7 12 12 C 1.38162 * 119.94173 * 179.97438 * 8 7 6 13 13 C 1.38244 * 120.05735 * 0.02723 * 12 8 7 14 14 C 1.50702 * 119.94459 * 179.97438 * 13 12 8 15 15 O 1.42894 * 109.47223 * 300.00354 * 14 13 12 16 16 Si 1.86298 * 109.47156 * 180.02562 * 14 13 12 17 17 C 1.38294 * 120.11141 * 359.97438 * 13 12 8 18 18 C 1.38123 * 120.05276 * 359.74959 * 17 13 12 19 19 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 20 20 H 1.08999 * 112.85593 * 191.19960 * 19 2 1 21 21 C 1.53790 * 113.61530 * 322.50317 * 19 2 1 22 22 C 1.53784 * 87.07959 * 89.11405 * 21 19 2 23 23 H 1.08997 * 113.61635 * 270.88878 * 22 21 19 24 24 O 1.42892 * 113.61461 * 139.98237 * 22 21 19 25 25 C 1.53782 * 113.61468 * 59.99901 * 19 2 1 26 26 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 27 27 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 28 28 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 29 29 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 30 30 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 31 31 H 1.08005 * 119.97303 * 180.02562 * 12 8 7 32 32 H 1.09001 * 109.47256 * 60.00291 * 14 13 12 33 33 H 0.96708 * 113.99767 * 180.02562 * 15 14 13 34 34 H 1.48508 * 110.00118 * 298.68482 * 16 14 13 35 35 H 1.48498 * 110.00119 * 59.99843 * 16 14 13 36 36 H 1.07999 * 119.96896 * 179.97438 * 17 13 12 37 37 H 1.08004 * 120.02415 * 180.27672 * 18 17 13 38 38 H 1.08990 * 113.61625 * 203.66069 * 21 19 2 39 39 H 1.09001 * 113.61092 * 334.56938 * 21 19 2 40 40 H 0.96700 * 114.00236 * 82.50491 * 24 22 21 41 41 H 1.09005 * 113.61163 * 25.43569 * 25 19 2 42 42 H 1.09002 * 113.61364 * 156.33545 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 8 2.3140 3.5584 -0.0116 7 6 1.7946 4.8142 -0.0183 8 6 2.6386 5.9151 -0.0231 9 7 4.1061 5.7232 -0.0202 10 8 4.8467 6.6903 -0.0249 11 8 4.5733 4.5984 -0.0131 12 6 2.1081 7.1907 -0.0304 13 6 0.7374 7.3706 -0.0323 14 6 0.1614 8.7632 -0.0397 15 8 0.6010 9.4666 1.1238 16 14 -1.6990 8.6657 -0.0398 17 6 -0.1062 6.2747 -0.0275 18 6 0.4193 4.9973 -0.0259 19 6 2.1975 -1.2687 0.0006 20 1 3.2624 -1.1426 0.1956 21 6 1.5373 -2.3608 0.8588 22 6 0.7440 -2.7581 -0.3973 23 1 -0.1983 -2.2212 -0.5065 24 8 0.6019 -4.1704 -0.5617 25 6 1.8954 -2.1550 -1.2193 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.7588 2.5257 -0.8967 30 1 0.7587 2.5344 0.8833 31 1 2.7647 8.0482 -0.0346 32 1 0.4980 9.2909 -0.9321 33 1 0.2674 10.3723 1.1853 34 1 -2.1709 7.9639 -1.2606 35 1 -2.1702 7.9486 1.1722 36 1 -1.1766 6.4179 -0.0286 37 1 -0.2399 4.1418 -0.0267 38 1 2.2320 -3.1293 1.1976 39 1 0.9145 -1.9677 1.6623 40 1 -0.1206 -4.5555 -0.0472 41 1 1.5616 -1.5957 -2.0934 42 1 2.6880 -2.8673 -1.4485 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16982422_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:37:28 Heat of formation + Delta-G solvation = -70.077520 kcal Electronic energy + Delta-G solvation = -29655.105820 eV Core-core repulsion = 25187.031399 eV Total energy + Delta-G solvation = -4468.074421 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39519 -42.08717 -41.48429 -40.06908 -39.19023 -37.66357 -37.41100 -36.76837 -34.77192 -33.63190 -32.44743 -30.04933 -28.51650 -27.92853 -26.87414 -26.63588 -25.08640 -24.01510 -22.84143 -21.70091 -20.61246 -19.92666 -19.81786 -19.28150 -18.91648 -18.75768 -18.46598 -18.13851 -17.81535 -17.59757 -17.03094 -16.54819 -16.26706 -16.10506 -16.00813 -15.39988 -15.28136 -14.91875 -14.55232 -14.40763 -14.20910 -13.94301 -13.88518 -13.61220 -13.43086 -13.17416 -13.03486 -12.78098 -12.76364 -12.64394 -12.54653 -12.40982 -12.34155 -12.23232 -11.97320 -11.47370 -11.07487 -10.99703 -10.77287 -10.43205 -9.88509 -9.86037 -4.88773 -1.42794 -0.37956 0.03228 0.23692 1.00832 1.26635 1.27505 1.68647 1.88535 1.92257 2.00538 2.95852 2.97303 3.21683 3.22433 3.26343 3.38789 3.47051 3.51552 3.53996 3.68045 3.74737 3.81525 3.91890 3.93242 4.09465 4.11894 4.21897 4.38851 4.47721 4.49040 4.53995 4.65353 4.66536 4.68259 4.75540 4.82513 4.86423 4.93618 5.04100 5.08457 5.42102 5.61922 6.08748 6.35716 6.86085 6.86971 6.89332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.589 5.589 3 C 0.509 3.491 4 O -0.563 6.563 5 C 0.028 3.972 6 O -0.289 6.289 7 C 0.193 3.807 8 C -0.101 4.101 9 N 0.034 4.966 10 O -0.187 6.187 11 O -0.176 6.176 12 C 0.002 3.998 13 C -0.117 4.117 14 C -0.088 4.088 15 O -0.568 6.568 16 Si 0.779 3.221 17 C -0.026 4.026 18 C -0.189 4.189 19 C 0.112 3.888 20 H 0.084 0.916 21 C -0.167 4.167 22 C 0.080 3.920 23 H 0.117 0.883 24 O -0.581 6.581 25 C -0.145 4.145 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.407 0.593 34 H -0.270 1.270 35 H -0.281 1.281 36 H 0.164 0.836 37 H 0.203 0.797 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 2.492 -0.010 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.323 5.323 3 C 0.296 3.704 4 O -0.440 6.440 5 C -0.049 4.049 6 O -0.199 6.199 7 C 0.143 3.857 8 C -0.186 4.186 9 N 0.546 4.454 10 O -0.398 6.398 11 O -0.388 6.388 12 C -0.017 4.017 13 C -0.118 4.118 14 C -0.196 4.196 15 O -0.379 6.379 16 Si 0.681 3.319 17 C -0.043 4.043 18 C -0.207 4.207 19 C 0.007 3.993 20 H 0.102 0.898 21 C -0.205 4.205 22 C 0.021 3.979 23 H 0.135 0.865 24 O -0.390 6.390 25 C -0.184 4.184 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.116 0.884 33 H 0.259 0.741 34 H -0.196 1.196 35 H -0.208 1.208 36 H 0.181 0.819 37 H 0.220 0.780 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.334 1.509 -0.298 17.402 hybrid contribution 1.301 -0.493 0.273 1.418 sum -16.033 1.016 -0.025 16.065 Atomic orbital electron populations 1.22576 0.76294 1.06255 1.04550 1.47466 1.08555 1.03580 1.72672 1.20493 0.87612 0.85849 0.76429 1.90837 1.16150 1.87438 1.49591 1.23158 0.91335 0.82256 1.08136 1.86474 1.35835 1.11580 1.86021 1.18870 0.92420 0.83373 0.91058 1.20881 0.77970 0.95973 1.23760 1.43798 1.04199 1.00284 0.97150 1.94494 1.58114 1.32635 1.54571 1.94691 1.80070 1.09975 1.54114 1.20897 0.96733 0.93818 0.90228 1.19710 0.91305 0.96644 1.04122 1.25035 1.12995 0.89537 0.92082 1.86445 1.76815 1.32427 1.42180 0.93416 0.71952 0.88957 0.77576 1.21497 1.00964 0.91422 0.90432 1.21675 0.90826 1.00860 1.07358 1.21694 0.97036 0.82574 0.97959 0.89763 1.24008 1.00711 0.97406 0.98406 1.23774 0.97934 0.81798 0.94390 0.86547 1.86510 1.58543 1.21625 1.72322 1.23495 0.99257 0.97976 0.97624 0.89872 0.88355 0.87819 0.84018 0.84059 0.82075 0.88387 0.74050 1.19562 1.20758 0.81895 0.78009 0.88656 0.88814 0.75212 0.90258 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.59 8.64 127.77 1.10 0.51 16 2 N -0.59 1.54 3.08 -819.65 -2.53 -0.98 16 3 C 0.51 2.22 7.75 87.66 0.68 2.90 16 4 O -0.56 -10.05 15.98 16.00 0.26 -9.80 16 5 C 0.03 -0.11 3.77 71.24 0.27 0.16 16 6 O -0.29 -2.15 7.68 -63.42 -0.49 -2.64 16 7 C 0.19 0.79 6.67 22.51 0.15 0.94 16 8 C -0.10 -0.97 6.87 36.48 0.25 -0.72 16 9 N 0.03 0.62 4.45 -46.24 -0.21 0.41 16 10 O -0.19 -3.57 18.45 18.88 0.35 -3.22 16 11 O -0.18 -4.10 17.24 25.62 0.44 -3.66 16 12 C 0.00 0.01 9.11 22.25 0.20 0.21 16 13 C -0.12 0.13 5.42 -19.85 -0.11 0.02 16 14 C -0.09 0.57 2.81 71.24 0.20 0.77 16 15 O -0.57 2.54 12.74 -148.98 -1.90 0.64 16 16 Si 0.78 -8.07 29.78 68.60 2.04 -6.02 16 17 C -0.03 0.13 8.66 22.26 0.19 0.32 16 18 C -0.19 1.08 9.04 22.36 0.20 1.28 16 19 C 0.11 0.11 4.46 45.52 0.20 0.31 16 20 H 0.08 0.66 7.23 -2.39 -0.02 0.65 16 21 C -0.17 0.65 7.13 31.12 0.22 0.87 16 22 C 0.08 -0.39 4.55 31.12 0.14 -0.25 16 23 H 0.12 -1.28 5.55 -2.39 -0.01 -1.29 16 24 O -0.58 0.96 13.67 -148.98 -2.04 -1.08 16 25 C -0.14 0.01 7.58 31.12 0.24 0.24 16 26 H 0.08 -1.33 8.14 -2.39 -0.02 -1.35 16 27 H 0.10 -1.53 4.83 -2.39 -0.01 -1.54 16 28 H 0.10 -1.99 6.45 -2.39 -0.02 -2.00 16 29 H 0.14 -1.79 7.61 -2.38 -0.02 -1.80 16 30 H 0.14 -1.79 6.94 -2.39 -0.02 -1.81 16 31 H 0.16 0.73 7.61 -2.91 -0.02 0.71 16 32 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 33 H 0.41 -5.99 8.74 -74.05 -0.65 -6.64 16 34 H -0.27 1.92 7.11 99.48 0.71 2.63 16 35 H -0.28 1.29 7.11 99.48 0.71 2.00 16 36 H 0.16 -1.57 4.87 -2.91 -0.01 -1.59 16 37 H 0.20 -3.23 6.30 -2.91 -0.02 -3.25 16 38 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.09 -0.68 7.36 -2.39 -0.02 -0.70 16 40 H 0.40 -4.18 9.12 -74.06 -0.68 -4.85 16 41 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -40.33 352.90 -0.29 -40.62 By element: Atomic # 1 Polarization: -21.65 SS G_CDS: -0.17 Total: -21.82 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 3.95 Total: 7.55 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.73 Total: -0.57 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -3.38 Total: -19.76 kcal Atomic # 14 Polarization: -8.07 SS G_CDS: 2.04 Total: -6.02 kcal Total: -40.33 -0.29 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16982422_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.457 kcal (2) G-P(sol) polarization free energy of solvation -40.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds