Wall clock time and date at job start Tue Mar 9 2021 15:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99992 * 2 1 4 4 O 1.21280 * 120.00027 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99648 * 0.02562 * 3 2 1 6 6 N 1.46500 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.36831 * 125.06403 * 264.96312 * 6 5 3 8 8 C 1.34234 * 109.93513 * 180.02562 * 7 6 5 9 9 C 1.50703 * 126.49682 * 179.97438 * 8 7 6 10 10 O 1.42908 * 109.47267 * 255.02401 * 9 8 7 11 11 Si 1.86298 * 109.47056 * 15.02355 * 9 8 7 12 12 C 1.46484 * 107.00462 * 359.97438 * 8 7 6 13 13 C 1.39597 * 134.04284 * 180.02562 * 12 8 7 14 14 C 1.36660 * 119.76671 * 179.97438 * 13 12 8 15 15 C 1.38787 * 120.52980 * 359.74578 * 14 13 12 16 16 C 1.37798 * 120.66163 * 0.51300 * 15 14 13 17 17 C 1.37696 * 125.06119 * 84.99903 * 6 5 3 18 18 C 1.46497 * 120.00152 * 180.02562 * 2 1 3 19 19 H 1.08996 * 112.85081 * 196.25849 * 18 2 1 20 20 C 1.53785 * 113.61283 * 327.45385 * 18 2 1 21 21 C 1.54048 * 86.98525 * 89.16367 * 20 18 2 22 22 H 1.08995 * 113.68981 * 270.87193 * 21 20 18 23 23 O 1.42899 * 113.61944 * 139.97624 * 21 20 18 24 24 C 1.53783 * 113.61878 * 65.06197 * 18 2 1 25 25 H 1.09001 * 109.46837 * 95.30405 * 1 2 3 26 26 H 1.09007 * 109.47159 * 215.29608 * 1 2 3 27 27 H 1.08996 * 109.47593 * 335.29974 * 1 2 3 28 28 H 1.08996 * 109.47690 * 59.99888 * 5 3 2 29 29 H 1.09005 * 109.47245 * 299.99593 * 5 3 2 30 30 H 1.07993 * 125.02839 * 0.02647 * 7 6 5 31 31 H 1.08999 * 109.47110 * 135.02711 * 9 8 7 32 32 H 0.96699 * 113.99713 * 59.99602 * 10 9 8 33 33 H 1.48496 * 110.00139 * 58.68060 * 11 9 8 34 34 H 1.48502 * 109.99814 * 180.02562 * 11 9 8 35 35 H 1.08004 * 120.11598 * 359.97438 * 13 12 8 36 36 H 1.07996 * 119.73639 * 179.97438 * 14 13 12 37 37 H 1.07994 * 119.67223 * 180.28167 * 15 14 13 38 38 H 1.08000 * 120.10893 * 179.76518 * 16 15 14 39 39 H 1.09000 * 113.61479 * 203.66671 * 20 18 2 40 40 H 1.08993 * 113.61609 * 334.56691 * 20 18 2 41 41 H 0.96705 * 114.00182 * 82.50869 * 23 21 20 42 42 H 1.09004 * 113.60958 * 25.42880 * 24 18 2 43 43 H 1.08994 * 113.61734 * 156.33440 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 7 2.3373 3.5858 0.0011 7 6 2.7733 4.2467 1.1170 8 6 3.6383 5.2122 0.7684 9 6 4.3430 6.1637 1.7007 10 8 3.7385 7.4554 1.6095 11 14 4.2054 5.5358 3.4493 12 6 3.7673 5.1657 -0.6900 13 6 4.5023 5.8990 -1.6231 14 6 4.4012 5.5999 -2.9528 15 6 3.5775 4.5691 -3.3829 16 6 2.8392 3.8359 -2.4794 17 6 2.9259 4.1237 -1.1215 18 6 2.1975 -1.2687 -0.0006 19 1 3.2442 -1.1532 0.2807 20 6 1.4769 -2.3964 0.7570 21 6 0.7814 -2.7362 -0.5749 22 1 -0.1511 -2.1943 -0.7327 23 8 0.6547 -4.1395 -0.8130 24 6 1.9911 -2.0987 -1.2786 25 1 -0.3633 -0.0950 -1.0233 26 1 -0.3634 -0.8388 0.5938 27 1 -0.3634 0.9336 0.4294 28 1 0.7590 2.5299 0.8907 29 1 0.7583 2.5302 -0.8892 30 1 2.4669 4.0245 2.1284 31 1 5.3943 6.2341 1.4216 32 1 2.8005 7.4681 1.8442 33 1 4.8021 4.1798 3.5505 34 1 4.8959 6.4658 4.3787 35 1 5.1484 6.7000 -1.2954 36 1 4.9697 6.1679 -3.6743 37 1 3.5116 4.3416 -4.4365 38 1 2.1982 3.0381 -2.8243 39 1 2.1456 -3.1802 1.1127 40 1 0.7952 -2.0381 1.5283 41 1 -0.1044 -4.5462 -0.3731 42 1 1.7241 -1.5002 -2.1495 43 1 2.8002 -2.8013 -1.4784 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16982422_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:38:13 Heat of formation + Delta-G solvation = -2.734914 kcal Electronic energy + Delta-G solvation = -26837.585076 eV Core-core repulsion = 23044.713667 eV Total energy + Delta-G solvation = -3792.871409 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59725 -41.58025 -39.70786 -38.11075 -37.60932 -36.73823 -34.84217 -33.85713 -31.44632 -30.25219 -29.03748 -28.42947 -26.85362 -26.05289 -24.72239 -23.71688 -22.73044 -21.57669 -20.64378 -19.82314 -19.02489 -18.51113 -18.17713 -17.75790 -17.35281 -16.92881 -16.62121 -16.45214 -16.25342 -15.84985 -15.47216 -15.26582 -15.11254 -14.82830 -14.74439 -14.40715 -14.33698 -14.07077 -13.67717 -13.59493 -13.43746 -13.20478 -13.04122 -12.72990 -12.68517 -12.59381 -12.46557 -12.27593 -12.13573 -11.83789 -11.46485 -11.14010 -10.77856 -10.57091 -10.31858 -9.81268 -9.17927 -8.64770 -5.06705 0.11992 0.60478 1.31428 1.34735 1.37716 1.62249 1.73480 1.96546 1.99347 2.91381 3.23133 3.30389 3.42950 3.54411 3.60069 3.65413 3.71817 3.77619 3.84895 3.93527 4.00346 4.07898 4.18759 4.21446 4.26633 4.46415 4.50501 4.54324 4.58106 4.65097 4.67981 4.69405 4.76013 4.80247 4.84597 4.86547 4.88610 5.06914 5.10979 5.47744 5.48880 5.63571 5.70925 5.73178 6.10400 6.19278 6.30864 6.88101 6.88928 6.95447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.590 5.590 3 C 0.490 3.510 4 O -0.575 6.575 5 C 0.092 3.908 6 N -0.468 5.468 7 C 0.080 3.920 8 C -0.224 4.224 9 C -0.041 4.041 10 O -0.560 6.560 11 Si 0.803 3.197 12 C -0.117 4.117 13 C -0.091 4.091 14 C -0.154 4.154 15 C -0.108 4.108 16 C -0.134 4.134 17 C 0.091 3.909 18 C 0.115 3.885 19 H 0.080 0.920 20 C -0.164 4.164 21 C 0.081 3.919 22 H 0.114 0.886 23 O -0.583 6.583 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.144 0.856 30 H 0.209 0.791 31 H 0.087 0.913 32 H 0.394 0.606 33 H -0.296 1.296 34 H -0.297 1.297 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.397 0.603 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -2.914 2.746 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.323 5.323 3 C 0.277 3.723 4 O -0.453 6.453 5 C -0.032 4.032 6 N -0.150 5.150 7 C -0.045 4.045 8 C -0.232 4.232 9 C -0.151 4.151 10 O -0.367 6.367 11 Si 0.708 3.292 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.173 4.173 15 C -0.127 4.127 16 C -0.154 4.154 17 C -0.014 4.014 18 C 0.010 3.990 19 H 0.098 0.902 20 C -0.203 4.203 21 C 0.022 3.978 22 H 0.131 0.869 23 O -0.391 6.391 24 C -0.187 4.187 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.188 0.812 29 H 0.162 0.838 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.243 0.757 33 H -0.224 1.224 34 H -0.225 1.225 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.248 0.752 42 H 0.093 0.907 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.396 -3.169 2.936 11.258 hybrid contribution 0.684 -0.235 -0.550 0.908 sum -9.712 -3.404 2.386 10.565 Atomic orbital electron populations 1.22488 0.76398 1.06287 1.04106 1.47623 1.08485 1.03892 1.72306 1.21631 0.88054 0.86765 0.75817 1.90798 1.16304 1.87627 1.50609 1.22069 0.90251 0.80657 1.10209 1.43489 1.38835 1.28309 1.04389 1.22072 0.97095 0.93189 0.92193 1.20790 1.06290 1.03637 0.92451 1.24580 0.97014 0.84997 1.08466 1.86455 1.30144 1.27724 1.92408 0.94146 0.88457 0.74996 0.71572 1.19374 1.00429 0.98433 0.93911 1.20454 0.98632 0.98965 0.92891 1.20910 1.01270 0.99552 0.95518 1.21123 0.96116 0.95343 1.00133 1.20242 1.03505 1.02365 0.89322 1.18381 0.97664 0.96249 0.89132 1.21612 0.96779 0.83178 0.97416 0.90191 1.24015 1.00684 0.97142 0.98427 1.23738 0.97899 0.81950 0.94167 0.86866 1.86510 1.54249 1.22209 1.76174 1.23503 0.99087 0.98318 0.97766 0.90584 0.88774 0.87342 0.81218 0.83838 0.77463 0.89498 0.75661 1.22389 1.22479 0.86521 0.84623 0.83720 0.85063 0.88851 0.88352 0.75201 0.90738 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.70 8.57 127.77 1.10 0.39 16 2 N -0.59 2.86 3.08 -819.63 -2.52 0.34 16 3 C 0.49 0.26 7.74 87.66 0.68 0.94 16 4 O -0.57 -7.52 15.94 -3.03 -0.05 -7.57 16 5 C 0.09 -0.67 4.96 85.63 0.42 -0.24 16 6 N -0.47 -0.77 2.27 -520.00 -1.18 -1.95 16 7 C 0.08 0.04 9.89 83.00 0.82 0.86 16 8 C -0.22 -1.34 5.57 -18.63 -0.10 -1.44 16 9 C -0.04 -0.18 3.06 71.24 0.22 0.04 16 10 O -0.56 -2.33 12.88 -148.98 -1.92 -4.25 16 11 Si 0.80 -0.26 30.75 68.60 2.11 1.85 16 12 C -0.12 -1.26 6.35 -20.20 -0.13 -1.38 16 13 C -0.09 -0.97 10.05 22.23 0.22 -0.75 16 14 C -0.15 -1.18 9.97 22.03 0.22 -0.96 16 15 C -0.11 -0.63 10.01 22.30 0.22 -0.41 16 16 C -0.13 -0.82 10.00 22.37 0.22 -0.59 16 17 C 0.09 0.71 6.80 39.03 0.27 0.98 16 18 C 0.12 -0.07 4.40 45.52 0.20 0.13 16 19 H 0.08 0.49 7.31 -2.39 -0.02 0.48 16 20 C -0.16 0.86 7.14 31.21 0.22 1.09 16 21 C 0.08 -0.42 4.58 31.21 0.14 -0.28 16 22 H 0.11 -1.23 5.75 -2.39 -0.01 -1.25 16 23 O -0.58 1.03 13.67 -148.98 -2.04 -1.01 16 24 C -0.15 0.03 7.64 31.12 0.24 0.27 16 25 H 0.08 -1.21 7.87 -2.39 -0.02 -1.22 16 26 H 0.09 -1.56 5.30 -2.38 -0.01 -1.57 16 27 H 0.11 -2.20 6.25 -2.39 -0.01 -2.22 16 28 H 0.17 -2.84 7.39 -2.39 -0.02 -2.86 16 29 H 0.14 -1.74 8.11 -2.38 -0.02 -1.76 16 30 H 0.21 -1.77 6.35 -2.91 -0.02 -1.79 16 31 H 0.09 0.71 7.96 -2.39 -0.02 0.70 16 32 H 0.39 -2.04 8.70 -74.06 -0.64 -2.68 16 33 H -0.30 -1.89 7.11 99.48 0.71 -1.19 16 34 H -0.30 -1.98 7.11 99.48 0.71 -1.27 16 35 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.14 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 39 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.10 -0.92 6.97 -2.39 -0.02 -0.93 16 41 H 0.40 -4.25 9.12 -74.05 -0.68 -4.93 16 42 H 0.07 -0.01 8.14 -2.39 -0.02 -0.02 16 43 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -33.82 353.28 -0.86 -34.68 By element: Atomic # 1 Polarization: -20.51 SS G_CDS: -0.23 Total: -20.73 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.96 Total: -1.36 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -3.70 Total: -1.60 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -4.00 Total: -12.83 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.11 Total: 1.85 kcal Total: -33.82 -0.86 -34.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16982422_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.945 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds