Wall clock time and date at job start Tue Mar 9 2021 12:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 Si 1.86300 * 109.47136 * 2 1 4 4 C 1.86306 * 109.90512 * 298.65368 * 3 2 1 5 5 C 1.52994 * 109.47243 * 298.39724 * 4 3 2 6 6 C 1.87350 * 109.92283 * 59.76245 * 3 2 1 7 7 C 1.53825 * 107.31023 * 166.19016 * 6 3 2 8 8 N 1.46302 * 109.22945 * 306.11383 * 7 6 3 9 9 C 1.34779 * 119.08581 * 252.35795 * 8 7 6 10 10 O 1.21283 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00235 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47556 * 179.97438 * 11 9 8 13 13 O 1.42897 * 109.47503 * 179.97438 * 12 11 9 14 14 C 1.35905 * 117.00093 * 179.97438 * 13 12 11 15 15 C 1.38707 * 120.05237 * 359.97438 * 14 13 12 16 16 C 1.38170 * 119.94268 * 180.02562 * 15 14 13 17 17 C 1.38248 * 120.05101 * 359.97426 * 16 15 14 18 18 C 1.38285 * 120.11687 * 0.05069 * 17 16 15 19 19 C 1.50700 * 119.97584 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47150 * 244.97427 * 19 18 17 21 21 Si 1.86302 * 109.46909 * 4.97726 * 19 18 17 22 22 H 1.48499 * 109.47190 * 59.99924 * 21 19 18 23 23 H 1.48503 * 109.47114 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46805 * 299.99807 * 21 19 18 25 25 C 1.38128 * 120.05162 * 359.94779 * 18 17 16 26 26 C 1.46300 * 121.83057 * 72.62901 * 8 7 6 27 27 C 1.54325 * 108.95788 * 287.40388 * 26 8 7 28 28 H 1.09003 * 109.47145 * 63.23880 * 1 2 3 29 29 H 1.09000 * 109.47092 * 183.23469 * 1 2 3 30 30 H 1.08995 * 109.47651 * 303.24015 * 1 2 3 31 31 H 1.08995 * 109.47790 * 239.99357 * 2 1 3 32 32 H 1.09003 * 109.46856 * 119.99584 * 2 1 3 33 33 H 1.09004 * 109.46909 * 58.39779 * 4 3 2 34 34 H 1.08999 * 109.46983 * 178.38797 * 4 3 2 35 35 H 1.08993 * 109.47362 * 58.44073 * 5 4 3 36 36 H 1.08995 * 109.47141 * 178.44680 * 5 4 3 37 37 H 1.09000 * 109.46866 * 298.44076 * 5 4 3 38 38 H 1.08998 * 109.88564 * 46.74458 * 6 3 2 39 39 H 1.08999 * 109.89272 * 285.63988 * 6 3 2 40 40 H 1.09000 * 109.51227 * 186.18524 * 7 6 3 41 41 H 1.09002 * 109.55383 * 66.06011 * 7 6 3 42 42 H 1.09000 * 109.47103 * 59.99510 * 11 9 8 43 43 H 1.09000 * 109.46968 * 299.99827 * 11 9 8 44 44 H 1.09008 * 109.47174 * 59.99089 * 12 11 9 45 45 H 1.09008 * 109.46878 * 299.99742 * 12 11 9 46 46 H 1.08001 * 120.03262 * 0.04479 * 15 14 13 47 47 H 1.07992 * 119.97800 * 180.02562 * 16 15 14 48 48 H 1.08005 * 119.93870 * 179.97438 * 17 16 15 49 49 H 1.09004 * 109.46700 * 124.97559 * 19 18 17 50 50 H 0.96704 * 113.99697 * 60.00334 * 20 19 18 51 51 H 1.08004 * 120.02696 * 180.29821 * 25 18 17 52 52 H 1.09009 * 109.50504 * 47.29560 * 26 8 7 53 53 H 1.09001 * 109.51523 * 167.43859 * 26 8 7 54 54 H 1.08997 * 109.96924 * 294.51746 * 27 26 8 55 55 H 1.08996 * 109.81879 * 173.41007 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1510 1.7565 0.0000 4 6 1.5705 2.6345 -1.5372 5 6 2.1407 1.9329 -2.7714 6 6 1.5275 2.6540 1.5217 7 6 2.3384 3.9549 1.6502 8 7 3.7661 3.6354 1.6431 9 6 4.4664 3.7393 2.7899 10 8 3.9123 4.0940 3.8088 11 6 5.9382 3.4159 2.8060 12 6 6.4886 3.6142 4.2197 13 8 7.8841 3.3070 4.2351 14 6 8.5306 3.4334 5.4238 15 6 7.8364 3.8451 6.5518 16 6 8.4961 3.9734 7.7590 17 6 9.8468 3.6912 7.8432 18 6 10.5413 3.2810 6.7200 19 6 12.0138 2.9748 6.8152 20 8 12.7475 3.9129 6.0256 21 14 12.5599 3.0975 8.5922 22 1 11.7974 2.1225 9.4128 23 1 14.0107 2.7951 8.6862 24 1 12.3066 4.4720 9.0940 25 6 9.8863 3.1512 5.5108 26 6 4.4559 3.2119 0.4244 27 6 4.0228 1.7718 0.0779 28 1 -0.3633 0.4627 -0.9176 29 1 -0.3633 -1.0260 0.0580 30 1 -0.3634 0.5633 0.8594 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 0.4814 2.6136 -1.5782 34 1 1.9134 3.6689 -1.5162 35 1 1.8203 0.8911 -2.7777 36 1 1.7789 2.4298 -3.6715 37 1 3.2295 1.9780 -2.7443 38 1 1.6784 2.0343 2.4056 39 1 0.4688 2.8868 1.4073 40 1 2.0814 4.4532 2.5849 41 1 2.1083 4.6124 0.8118 42 1 6.4630 4.0768 2.1161 43 1 6.0860 2.3802 2.5002 44 1 5.9638 2.9536 4.9100 45 1 6.3409 4.6502 4.5251 46 1 6.7810 4.0650 6.4867 47 1 7.9560 4.2935 8.6377 48 1 10.3608 3.7924 8.7877 49 1 12.1996 1.9658 6.4468 50 1 12.6293 4.8334 6.2975 51 1 10.4281 2.8262 4.6348 52 1 4.1915 3.8808 -0.3947 53 1 5.5334 3.2421 0.5867 54 1 4.3674 1.0835 0.8496 55 1 4.4366 1.4839 -0.8885 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_4549614.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:22 Heat of formation + Delta-G solvation = -120.080420 kcal Electronic energy + Delta-G solvation = -30635.954336 eV Core-core repulsion = 26568.590676 eV Total energy + Delta-G solvation = -4067.363660 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.198 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51413 -41.01821 -39.16997 -37.42868 -37.23610 -33.80296 -33.70228 -32.80746 -32.49100 -32.06133 -30.92281 -30.13628 -27.04967 -25.70182 -24.48928 -23.73747 -23.48798 -23.36112 -23.09935 -21.95249 -20.05337 -19.31825 -18.33586 -17.92836 -17.53573 -17.21764 -16.95900 -16.82767 -16.37805 -16.09741 -15.62787 -15.55651 -15.38862 -15.06424 -14.99364 -14.82189 -14.65480 -14.44190 -14.35358 -14.24124 -14.12919 -13.89768 -13.81223 -13.47879 -13.15300 -13.13233 -12.91948 -12.87168 -12.78088 -12.73607 -12.37488 -12.29191 -12.16968 -12.13929 -12.01560 -11.92204 -11.83630 -11.70108 -11.52392 -11.03658 -10.45875 -10.41789 -10.28978 -10.27032 -9.95870 -9.71283 -9.30251 0.17297 0.35454 1.16829 1.47374 1.47722 1.54861 1.65992 1.77705 1.87263 1.92169 1.94690 2.32386 2.61557 2.63497 3.46227 3.50886 3.67213 3.73751 3.84356 3.85808 4.03030 4.13947 4.16268 4.19178 4.26726 4.31026 4.36756 4.38362 4.42570 4.48607 4.51718 4.54530 4.58717 4.60419 4.63848 4.68216 4.73297 4.74675 4.75890 4.83641 4.88169 4.95877 5.04226 5.17144 5.22690 5.24289 5.27215 5.34027 5.34298 5.35804 5.40190 5.44993 5.51100 5.58068 5.65664 5.66781 6.24183 6.31482 6.69559 7.04398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.425 4.425 3 Si 1.058 2.942 4 C -0.414 4.414 5 C -0.151 4.151 6 C -0.437 4.437 7 C 0.114 3.886 8 N -0.605 5.605 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.075 3.925 13 O -0.321 6.321 14 C 0.118 3.882 15 C -0.212 4.212 16 C -0.077 4.077 17 C -0.170 4.170 18 C -0.083 4.083 19 C -0.082 4.082 20 O -0.551 6.551 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.134 4.134 26 C 0.102 3.898 27 C -0.429 4.429 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.135 0.865 47 H 0.148 0.852 48 H 0.136 0.864 49 H 0.126 0.874 50 H 0.389 0.611 51 H 0.136 0.864 52 H 0.099 0.901 53 H 0.105 0.895 54 H 0.077 0.923 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -0.422 -4.368 4.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.510 4.510 3 Si 1.248 2.752 4 C -0.501 4.501 5 C -0.208 4.208 6 C -0.521 4.521 7 C -0.008 4.008 8 N -0.338 5.338 9 C 0.303 3.697 10 O -0.466 6.466 11 C -0.174 4.174 12 C 0.000 4.000 13 O -0.235 6.235 14 C 0.072 3.928 15 C -0.231 4.231 16 C -0.095 4.095 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.192 4.192 20 O -0.358 6.358 21 Si 0.813 3.187 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.174 1.174 25 C -0.153 4.153 26 C -0.019 4.019 27 C -0.516 4.516 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.153 0.847 47 H 0.166 0.834 48 H 0.153 0.847 49 H 0.143 0.857 50 H 0.238 0.762 51 H 0.154 0.846 52 H 0.117 0.883 53 H 0.123 0.877 54 H 0.096 0.904 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.125 -0.772 -3.510 3.596 hybrid contribution -0.976 0.370 0.215 1.066 sum -1.102 -0.402 -3.294 3.497 Atomic orbital electron populations 1.21413 0.95582 1.01670 1.02166 1.26191 1.00626 1.19770 1.04445 0.78692 0.66443 0.65286 0.64814 1.26055 1.05365 1.07025 1.11607 1.21425 1.01673 1.00391 0.97309 1.26932 1.04787 1.04055 1.16331 1.21230 0.78751 0.97264 1.03522 1.48107 1.09776 1.66292 1.09591 1.20738 0.89460 0.76391 0.83148 1.90709 1.72660 1.49122 1.34141 1.21527 0.91396 1.07019 0.97505 1.22428 0.78318 1.01206 0.98076 1.85953 1.23842 1.83898 1.29822 1.19167 0.92367 0.96383 0.84835 1.21524 1.01291 1.06844 0.93426 1.21190 0.94255 0.96445 0.97598 1.21197 0.95431 1.03664 0.98524 1.20256 0.96770 0.98530 0.92835 1.25119 0.87761 0.97050 1.09243 1.86493 1.69340 1.20502 1.59487 0.85121 0.78877 0.81279 0.73424 1.18177 1.19949 1.17397 1.20356 0.91145 1.04792 0.99018 1.21819 0.98566 0.95733 0.85817 1.26810 1.20680 0.98273 1.05853 0.91822 0.93636 0.92571 0.90292 0.91564 0.90909 0.90160 0.92556 0.93460 0.91304 0.92161 0.89127 0.91499 0.88579 0.85397 0.85732 0.91905 0.91724 0.84748 0.83412 0.84680 0.85669 0.76165 0.84644 0.88270 0.87690 0.90379 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 9.29 71.98 0.67 0.99 16 2 C -0.43 1.54 5.17 71.98 0.37 1.91 16 3 Si 1.06 -7.47 8.66 68.60 0.59 -6.88 16 4 C -0.41 2.78 5.17 71.98 0.37 3.15 16 5 C -0.15 0.92 9.29 71.98 0.67 1.59 16 6 C -0.44 0.95 5.22 72.26 0.38 1.33 16 7 C 0.11 -0.06 5.87 86.69 0.51 0.45 16 8 N -0.61 0.91 2.61 -818.58 -2.13 -1.23 16 9 C 0.51 1.70 7.64 87.66 0.67 2.37 16 10 O -0.59 -7.07 15.26 -3.04 -0.05 -7.12 16 11 C -0.14 0.25 4.38 29.85 0.13 0.38 16 12 C 0.08 0.22 4.03 71.98 0.29 0.51 16 13 O -0.32 -1.67 10.14 -92.48 -0.94 -2.60 16 14 C 0.12 0.71 6.69 22.50 0.15 0.86 16 15 C -0.21 -0.97 9.04 22.37 0.20 -0.76 16 16 C -0.08 -0.18 10.04 22.26 0.22 0.05 16 17 C -0.17 -0.33 8.67 22.28 0.19 -0.13 16 18 C -0.08 -0.22 5.35 -19.88 -0.11 -0.33 16 19 C -0.08 0.00 2.80 71.24 0.20 0.20 16 20 O -0.55 -0.70 12.83 -148.98 -1.91 -2.61 16 21 Si 0.99 -0.96 25.14 68.60 1.72 0.77 16 22 H -0.26 -0.06 7.11 99.48 0.71 0.65 16 23 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 24 H -0.25 0.33 7.04 99.48 0.70 1.03 16 25 C -0.13 -0.67 9.62 22.37 0.22 -0.45 16 26 C 0.10 -0.80 5.78 86.87 0.50 -0.30 16 27 C -0.43 3.57 5.24 72.43 0.38 3.95 16 28 H 0.06 -0.24 8.04 -2.39 -0.02 -0.26 16 29 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.06 -0.14 7.88 -2.39 -0.02 -0.16 16 31 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 32 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 33 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 34 H 0.08 -0.62 7.96 -2.39 -0.02 -0.64 16 35 H 0.06 -0.34 7.76 -2.39 -0.02 -0.36 16 36 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 -0.59 7.50 -2.39 -0.02 -0.61 16 38 H 0.06 0.11 7.99 -2.39 -0.02 0.09 16 39 H 0.09 -0.31 7.99 -2.39 -0.02 -0.33 16 40 H 0.07 0.35 6.91 -2.39 -0.02 0.33 16 41 H 0.10 -0.50 8.05 -2.39 -0.02 -0.51 16 42 H 0.13 -0.77 7.50 -2.39 -0.02 -0.78 16 43 H 0.12 -0.65 7.98 -2.39 -0.02 -0.67 16 44 H 0.06 0.28 7.62 -2.38 -0.02 0.26 16 45 H 0.06 0.27 7.62 -2.38 -0.02 0.25 16 46 H 0.13 0.45 6.30 -2.91 -0.02 0.43 16 47 H 0.15 -0.32 8.06 -2.91 -0.02 -0.35 16 48 H 0.14 -0.18 4.86 -2.91 -0.01 -0.20 16 49 H 0.13 -0.21 7.96 -2.38 -0.02 -0.23 16 50 H 0.39 -1.98 8.70 -74.05 -0.64 -2.63 16 51 H 0.14 0.57 8.06 -2.91 -0.02 0.54 16 52 H 0.10 -1.11 8.05 -2.38 -0.02 -1.12 16 53 H 0.10 -1.11 5.77 -2.39 -0.01 -1.13 16 54 H 0.08 -0.54 7.99 -2.39 -0.02 -0.56 16 55 H 0.11 -1.21 7.49 -2.39 -0.02 -1.23 16 Total: 0.00 -17.53 429.21 4.27 -13.26 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: 0.97 Total: -9.33 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.02 Total: 15.75 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -2.13 Total: -1.23 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -2.90 Total: -12.34 kcal Atomic # 14 Polarization: -8.43 SS G_CDS: 2.32 Total: -6.11 kcal Total: -17.53 4.27 -13.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_4549614.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.822 kcal (2) G-P(sol) polarization free energy of solvation -17.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds