Wall clock time and date at job start Tue Mar 9 2021 13:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Si 1.86303 * 109.47031 * 2 1 4 4 C 1.86297 * 109.90801 * 298.66231 * 3 2 1 5 5 C 1.53006 * 109.47135 * 298.39104 * 4 3 2 6 6 C 1.87349 * 109.91863 * 59.76998 * 3 2 1 7 7 C 1.53823 * 107.31024 * 166.18949 * 6 3 2 8 8 N 1.46306 * 109.22569 * 306.10844 * 7 6 3 9 9 C 1.34780 * 119.08553 * 252.35564 * 8 7 6 10 10 O 1.21280 * 119.99845 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99866 * 179.97438 * 9 8 7 12 12 O 1.42900 * 109.47285 * 179.97438 * 11 9 8 13 13 C 1.35900 * 116.99963 * 180.02562 * 12 11 9 14 14 C 1.38711 * 120.05553 * 359.97438 * 13 12 11 15 15 C 1.38166 * 119.93966 * 179.75212 * 14 13 12 16 16 C 1.38244 * 120.05576 * 0.54193 * 15 14 13 17 17 C 1.50697 * 119.94497 * 179.72852 * 16 15 14 18 18 O 1.42909 * 109.47344 * 244.73139 * 17 16 15 19 19 Si 1.86308 * 109.47170 * 4.72655 * 17 16 15 20 20 H 1.48499 * 109.46827 * 60.00119 * 19 17 16 21 21 H 1.48501 * 109.47353 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47042 * 300.00154 * 19 17 16 23 23 C 1.38281 * 120.11121 * 359.45935 * 16 15 14 24 24 C 1.38118 * 120.05754 * 0.27092 * 23 16 15 25 25 N 1.48009 * 120.03168 * 180.02562 * 24 23 16 26 26 O 1.21803 * 119.99608 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00315 * 179.97438 * 25 24 23 28 28 C 1.46298 * 121.82510 * 72.63778 * 8 7 6 29 29 C 1.54331 * 108.95384 * 287.39568 * 28 8 7 30 30 H 1.08997 * 109.47495 * 63.23324 * 1 2 3 31 31 H 1.09006 * 109.47044 * 183.23006 * 1 2 3 32 32 H 1.09001 * 109.47111 * 303.23054 * 1 2 3 33 33 H 1.09007 * 109.47221 * 240.00446 * 2 1 3 34 34 H 1.08997 * 109.47315 * 120.00366 * 2 1 3 35 35 H 1.08999 * 109.47489 * 58.39163 * 4 3 2 36 36 H 1.08999 * 109.47268 * 178.39537 * 4 3 2 37 37 H 1.09003 * 109.46733 * 298.44718 * 5 4 3 38 38 H 1.08995 * 109.46867 * 58.44351 * 5 4 3 39 39 H 1.08997 * 109.47223 * 178.44548 * 5 4 3 40 40 H 1.08999 * 109.88979 * 46.73529 * 6 3 2 41 41 H 1.09004 * 109.88913 * 285.63906 * 6 3 2 42 42 H 1.09000 * 109.51467 * 186.18744 * 7 6 3 43 43 H 1.08997 * 109.55544 * 66.06005 * 7 6 3 44 44 H 1.09002 * 109.46929 * 60.00009 * 11 9 8 45 45 H 1.08997 * 109.47375 * 300.00239 * 11 9 8 46 46 H 1.07996 * 120.02687 * 0.04058 * 14 13 12 47 47 H 1.08002 * 119.96861 * 180.29292 * 15 14 13 48 48 H 1.08991 * 109.47565 * 124.72737 * 17 16 15 49 49 H 0.96693 * 113.99880 * 179.97438 * 18 17 16 50 50 H 1.08010 * 119.97112 * 180.24936 * 23 16 15 51 51 H 1.08996 * 109.51318 * 47.29064 * 28 8 7 52 52 H 1.09003 * 109.51178 * 167.43972 * 28 8 7 53 53 H 1.09003 * 109.96947 * 294.52230 * 29 28 8 54 54 H 1.08999 * 109.81541 * 173.41564 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1510 1.7565 0.0000 4 6 1.5703 2.6346 -1.5370 5 6 2.1406 1.9332 -2.7714 6 6 1.5276 2.6539 1.5219 7 6 2.3384 3.9547 1.6504 8 7 3.7661 3.6352 1.6432 9 6 4.4665 3.7391 2.7901 10 8 3.9125 4.0938 3.8090 11 6 5.9381 3.4145 2.8063 12 8 6.4523 3.5999 4.1266 13 6 7.7745 3.3483 4.3148 14 6 8.5605 2.9311 3.2508 15 6 9.9056 2.6809 3.4436 16 6 10.4657 2.8352 4.6981 17 6 11.9317 2.5557 4.9069 18 8 12.0834 1.4406 5.7877 19 14 12.7291 2.1661 3.2688 20 1 12.5716 3.3248 2.3536 21 1 14.1739 1.8912 3.4745 22 1 12.0776 0.9722 2.6727 23 6 9.6841 3.2510 5.7604 24 6 8.3402 3.5078 5.5716 25 7 7.5043 3.9533 6.7089 26 8 8.0015 4.0932 7.8120 27 8 6.3193 4.1800 6.5418 28 6 4.4559 3.2119 0.4245 29 6 4.0228 1.7718 0.0778 30 1 -0.3634 0.4628 -0.9175 31 1 -0.3633 -1.0261 0.0579 32 1 -0.3633 0.5632 0.8596 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.4813 2.6138 -1.5780 36 1 1.9133 3.6690 -1.5161 37 1 3.2294 1.9783 -2.7443 38 1 1.8202 0.8914 -2.7777 39 1 1.7786 2.4301 -3.6714 40 1 1.6785 2.0340 2.4057 41 1 0.4689 2.8866 1.4075 42 1 2.0816 4.4530 2.5852 43 1 2.1083 4.6124 0.8122 44 1 6.4634 4.0748 2.1162 45 1 6.0851 2.3786 2.5009 46 1 8.1225 2.8064 2.2715 47 1 10.5191 2.3606 2.6145 48 1 12.4099 3.4319 5.3444 49 1 13.0034 1.2034 5.9671 50 1 10.1249 3.3747 6.7386 51 1 4.1915 3.8808 -0.3945 52 1 5.5333 3.2421 0.5867 53 1 4.3675 1.0834 0.8495 54 1 4.4365 1.4840 -0.8887 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_4549638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:48 Heat of formation + Delta-G solvation = -105.709330 kcal Electronic energy + Delta-G solvation = -35917.455665 eV Core-core repulsion = 31175.236366 eV Total energy + Delta-G solvation = -4742.219300 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 396.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.30649 -41.87257 -40.95905 -39.42889 -37.59506 -37.49297 -37.26957 -33.71148 -33.59993 -32.96859 -32.58708 -32.26057 -30.82219 -29.21002 -27.83455 -26.53649 -24.52032 -24.45060 -23.54350 -23.34720 -23.16614 -22.64263 -20.51420 -20.32563 -19.80367 -19.17862 -18.68489 -18.48204 -18.23893 -17.68841 -17.62729 -16.83525 -16.48194 -16.13074 -15.93486 -15.68761 -15.53988 -15.37578 -15.21532 -14.95320 -14.62447 -14.44321 -14.33251 -14.23259 -14.11977 -13.92375 -13.81144 -13.68183 -13.43907 -13.16590 -13.06568 -12.80629 -12.71964 -12.71020 -12.65862 -12.37255 -12.30168 -12.27711 -12.16354 -12.14333 -12.01299 -11.96483 -11.80155 -11.68878 -11.00072 -10.85684 -10.42459 -10.39198 -10.28710 -10.26893 -9.79795 -9.73744 -1.32382 -0.25739 0.14029 0.33459 1.14513 1.19405 1.40758 1.49613 1.57908 1.77349 1.87787 1.94423 1.95230 2.00383 2.18197 2.61494 3.07117 3.11126 3.31676 3.40192 3.59103 3.66463 3.77559 3.90885 3.95488 4.13348 4.15751 4.23141 4.30385 4.33252 4.37941 4.41650 4.49623 4.50282 4.52291 4.59096 4.60934 4.65873 4.69918 4.73515 4.81920 4.85684 4.87087 5.03785 5.06225 5.16857 5.18290 5.26189 5.26941 5.34682 5.37048 5.46307 5.51724 5.53909 5.67546 5.73848 6.20760 6.42761 6.78609 7.03225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.427 4.427 3 Si 1.057 2.943 4 C -0.414 4.414 5 C -0.150 4.150 6 C -0.443 4.443 7 C 0.116 3.884 8 N -0.601 5.601 9 C 0.503 3.497 10 O -0.567 6.567 11 C 0.022 3.978 12 O -0.290 6.290 13 C 0.191 3.809 14 C -0.190 4.190 15 C -0.019 4.019 16 C -0.114 4.114 17 C -0.091 4.091 18 O -0.566 6.566 19 Si 0.982 3.018 20 H -0.241 1.241 21 H -0.259 1.259 22 H -0.251 1.251 23 C 0.001 3.999 24 C -0.103 4.103 25 N 0.035 4.965 26 O -0.192 6.192 27 O -0.180 6.180 28 C 0.098 3.902 29 C -0.426 4.426 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.204 0.796 47 H 0.175 0.825 48 H 0.098 0.902 49 H 0.402 0.598 50 H 0.159 0.841 51 H 0.106 0.894 52 H 0.114 0.886 53 H 0.082 0.918 54 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.843 -3.157 -14.783 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.511 4.511 3 Si 1.247 2.753 4 C -0.500 4.500 5 C -0.207 4.207 6 C -0.526 4.526 7 C -0.006 4.006 8 N -0.336 5.336 9 C 0.290 3.710 10 O -0.445 6.445 11 C -0.055 4.055 12 O -0.201 6.201 13 C 0.141 3.859 14 C -0.209 4.209 15 C -0.037 4.037 16 C -0.115 4.115 17 C -0.199 4.199 18 O -0.376 6.376 19 Si 0.803 3.197 20 H -0.164 1.164 21 H -0.183 1.183 22 H -0.175 1.175 23 C -0.018 4.018 24 C -0.189 4.189 25 N 0.545 4.455 26 O -0.402 6.402 27 O -0.391 6.391 28 C -0.023 4.023 29 C -0.513 4.513 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.162 0.838 45 H 0.157 0.843 46 H 0.221 0.779 47 H 0.192 0.808 48 H 0.116 0.884 49 H 0.253 0.747 50 H 0.177 0.823 51 H 0.124 0.876 52 H 0.132 0.868 53 H 0.100 0.900 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.442 -3.258 -15.428 17.436 hybrid contribution -0.586 0.185 1.735 1.840 sum 6.856 -3.072 -13.694 15.619 Atomic orbital electron populations 1.21420 0.95877 1.01591 1.02062 1.26217 1.00413 1.20014 1.04475 0.78712 0.67276 0.64978 0.64338 1.26050 1.05250 1.07138 1.11593 1.21430 1.01909 1.00276 0.97130 1.27040 1.04736 1.04137 1.16724 1.21223 0.78558 0.97314 1.03462 1.48056 1.09664 1.66739 1.09121 1.20578 0.89068 0.77628 0.83720 1.90820 1.71980 1.47305 1.34401 1.23247 0.92325 1.06845 0.83071 1.86480 1.19776 1.81196 1.32601 1.18944 0.84194 0.91011 0.91726 1.21724 0.94104 1.05654 0.99379 1.21685 0.94775 0.90202 0.97001 1.19523 0.96346 1.02956 0.92673 1.24983 0.94410 0.93248 1.07281 1.86464 1.34102 1.48935 1.68114 0.85240 0.79087 0.81215 0.74159 1.16388 1.18327 1.17504 1.20890 0.88248 0.90581 1.02045 1.20861 0.93038 1.20027 0.84930 1.43851 1.01554 0.97716 1.02349 1.94486 1.76346 1.57148 1.12220 1.94690 0.99117 1.54566 1.90764 1.21960 0.98620 0.95960 0.85751 1.26738 1.19848 0.98292 1.06465 0.91765 0.93700 0.92884 0.90016 0.91691 0.91249 0.89963 0.90812 0.92681 0.93575 0.92610 0.89437 0.92176 0.87997 0.83802 0.84328 0.77935 0.80793 0.88380 0.74686 0.82326 0.87610 0.86816 0.89966 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 9.29 71.98 0.67 0.99 16 2 C -0.43 1.89 5.17 71.98 0.37 2.26 16 3 Si 1.06 -8.92 8.66 68.60 0.59 -8.32 16 4 C -0.41 3.40 5.17 71.98 0.37 3.77 16 5 C -0.15 1.23 9.29 71.98 0.67 1.90 16 6 C -0.44 0.70 5.22 72.26 0.38 1.08 16 7 C 0.12 -0.01 5.87 86.69 0.51 0.50 16 8 N -0.60 1.59 2.61 -818.59 -2.13 -0.55 16 9 C 0.50 2.33 7.72 87.66 0.68 3.00 16 10 O -0.57 -10.28 15.78 16.00 0.25 -10.03 16 11 C 0.02 -0.08 3.53 71.24 0.25 0.17 16 12 O -0.29 -2.13 7.68 -63.40 -0.49 -2.62 16 13 C 0.19 0.64 6.67 22.51 0.15 0.79 16 14 C -0.19 1.38 9.04 22.37 0.20 1.58 16 15 C -0.02 0.14 8.66 22.25 0.19 0.33 16 16 C -0.11 0.31 5.39 -19.85 -0.11 0.20 16 17 C -0.09 0.62 2.79 71.23 0.20 0.82 16 18 O -0.57 2.33 12.81 -148.98 -1.91 0.42 16 19 Si 0.98 -9.38 25.13 68.60 1.72 -7.66 16 20 H -0.24 2.46 7.11 99.48 0.71 3.17 16 21 H -0.26 1.99 7.11 99.48 0.71 2.69 16 22 H -0.25 2.09 7.05 99.48 0.70 2.79 16 23 C 0.00 0.01 9.19 22.25 0.20 0.21 16 24 C -0.10 -0.93 6.87 36.47 0.25 -0.68 16 25 N 0.03 0.63 4.45 -46.24 -0.21 0.42 16 26 O -0.19 -3.66 18.45 18.88 0.35 -3.32 16 27 O -0.18 -4.20 17.24 25.61 0.44 -3.76 16 28 C 0.10 -1.20 5.78 86.87 0.50 -0.70 16 29 C -0.43 5.24 5.24 72.43 0.38 5.62 16 30 H 0.06 -0.25 8.03 -2.39 -0.02 -0.27 16 31 H 0.04 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.05 -0.09 7.88 -2.39 -0.02 -0.11 16 33 H 0.08 -0.47 7.79 -2.38 -0.02 -0.49 16 34 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.08 -0.79 7.96 -2.39 -0.02 -0.81 16 37 H 0.07 -0.87 7.50 -2.39 -0.02 -0.89 16 38 H 0.05 -0.43 7.76 -2.39 -0.02 -0.45 16 39 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.05 0.18 7.99 -2.39 -0.02 0.16 16 41 H 0.09 -0.20 7.99 -2.39 -0.02 -0.22 16 42 H 0.06 0.45 6.91 -2.39 -0.02 0.43 16 43 H 0.10 -0.57 8.05 -2.39 -0.02 -0.59 16 44 H 0.14 -1.88 7.02 -2.39 -0.02 -1.90 16 45 H 0.14 -1.64 7.50 -2.39 -0.02 -1.66 16 46 H 0.20 -3.55 6.30 -2.91 -0.02 -3.57 16 47 H 0.18 -2.39 4.86 -2.91 -0.01 -2.40 16 48 H 0.10 -0.98 7.96 -2.39 -0.02 -1.00 16 49 H 0.40 -5.13 8.74 -74.06 -0.65 -5.78 16 50 H 0.16 0.58 7.61 -2.91 -0.02 0.56 16 51 H 0.11 -1.66 8.05 -2.39 -0.02 -1.68 16 52 H 0.11 -2.08 5.77 -2.39 -0.01 -2.09 16 53 H 0.08 -0.93 7.99 -2.39 -0.02 -0.95 16 54 H 0.12 -1.93 7.49 -2.39 -0.02 -1.95 16 Total: 0.00 -37.09 434.32 5.52 -31.56 By element: Atomic # 1 Polarization: -19.03 SS G_CDS: 1.03 Total: -18.00 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 5.87 Total: 21.84 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -2.34 Total: -0.13 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.35 Total: -19.29 kcal Atomic # 14 Polarization: -18.30 SS G_CDS: 2.32 Total: -15.98 kcal Total: -37.09 5.52 -31.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_4549638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.146 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds