Wall clock time and date at job start Tue Mar 9 2021 13:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 Si 1.86299 * 109.46996 * 2 1 4 4 C 1.86300 * 109.90978 * 298.65948 * 3 2 1 5 5 C 1.53002 * 109.47401 * 298.39646 * 4 3 2 6 6 C 1.87349 * 109.92140 * 59.77026 * 3 2 1 7 7 C 1.53831 * 107.31024 * 166.18746 * 6 3 2 8 8 N 1.46305 * 109.22610 * 306.10998 * 7 6 3 9 9 C 1.34773 * 119.08741 * 252.35050 * 8 7 6 10 10 O 1.21281 * 120.00141 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99946 * 180.02562 * 9 8 7 12 12 O 1.42903 * 109.46956 * 180.02562 * 11 9 8 13 13 C 1.35981 * 116.99899 * 180.02562 * 12 11 9 14 14 C 1.38675 * 120.00049 * 0.02562 * 13 12 11 15 15 C 1.38159 * 119.99817 * 180.25779 * 14 13 12 16 16 C 1.38676 * 120.00044 * 359.44265 * 15 14 13 17 17 O 1.35981 * 120.00170 * 180.27714 * 16 15 14 18 18 C 1.42903 * 116.99792 * 0.28211 * 17 16 15 19 19 C 1.38717 * 120.00039 * 0.55932 * 16 15 14 20 20 C 1.38113 * 119.99935 * 359.72041 * 19 16 15 21 21 C 1.50702 * 120.00099 * 180.02562 * 20 19 16 22 22 O 1.42892 * 109.47252 * 104.97732 * 21 20 19 23 23 Si 1.86299 * 109.46977 * 344.97294 * 21 20 19 24 24 H 1.48501 * 109.46739 * 60.00208 * 23 21 20 25 25 H 1.48492 * 109.47062 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47500 * 300.00625 * 23 21 20 27 27 C 1.46303 * 121.82657 * 72.63835 * 8 7 6 28 28 C 1.54328 * 108.95310 * 287.39411 * 27 8 7 29 29 H 1.09005 * 109.47322 * 183.23798 * 1 2 3 30 30 H 1.09006 * 109.46923 * 303.23330 * 1 2 3 31 31 H 1.08997 * 109.47498 * 63.23291 * 1 2 3 32 32 H 1.09003 * 109.46939 * 240.00015 * 2 1 3 33 33 H 1.08998 * 109.47446 * 119.99935 * 2 1 3 34 34 H 1.09006 * 109.47134 * 58.39154 * 4 3 2 35 35 H 1.08998 * 109.47614 * 178.39143 * 4 3 2 36 36 H 1.09006 * 109.46912 * 58.43877 * 5 4 3 37 37 H 1.08998 * 109.47579 * 178.44225 * 5 4 3 38 38 H 1.09002 * 109.46867 * 298.44163 * 5 4 3 39 39 H 1.09000 * 109.88855 * 46.74147 * 6 3 2 40 40 H 1.09001 * 109.89138 * 285.63625 * 6 3 2 41 41 H 1.09003 * 109.50807 * 186.18617 * 7 6 3 42 42 H 1.08999 * 109.55234 * 66.06028 * 7 6 3 43 43 H 1.08994 * 109.47182 * 60.00495 * 11 9 8 44 44 H 1.09002 * 109.47368 * 300.00107 * 11 9 8 45 45 H 1.08000 * 120.00325 * 359.97438 * 14 13 12 46 46 H 1.08003 * 119.99883 * 179.69808 * 15 14 13 47 47 H 1.08996 * 109.47247 * 180.02562 * 18 17 16 48 48 H 1.09000 * 109.47075 * 299.99692 * 18 17 16 49 49 H 1.08994 * 109.47529 * 59.99491 * 18 17 16 50 50 H 1.07994 * 120.00450 * 179.74363 * 19 16 15 51 51 H 1.09000 * 109.46641 * 224.97702 * 21 20 19 52 52 H 0.96701 * 114.00047 * 59.99892 * 22 21 20 53 53 H 1.08993 * 109.51445 * 47.28408 * 27 8 7 54 54 H 1.08996 * 109.51396 * 167.43807 * 27 8 7 55 55 H 1.09002 * 109.97503 * 294.52328 * 28 27 8 56 56 H 1.08999 * 109.81763 * 173.40760 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1509 1.7565 0.0000 4 6 1.5703 2.6346 -1.5370 5 6 2.1405 1.9331 -2.7715 6 6 1.5276 2.6539 1.5219 7 6 2.3385 3.9548 1.6503 8 7 3.7662 3.6352 1.6432 9 6 4.4667 3.7392 2.7899 10 8 3.9126 4.0931 3.8090 11 6 5.9384 3.4156 2.8058 12 8 6.4523 3.5998 4.1264 13 6 7.7755 3.3488 4.3145 14 6 8.5609 2.9346 3.2493 15 6 9.9041 2.6745 3.4416 16 6 10.4694 2.8386 4.6973 17 8 11.7926 2.5880 4.8853 18 6 12.5413 2.1649 3.7440 19 6 9.6837 3.2528 5.7628 20 6 8.3397 3.5074 5.5719 21 6 7.4862 3.9579 6.7293 22 8 7.2139 5.3551 6.6048 23 14 8.3899 3.6412 8.3274 24 1 9.6682 4.3970 8.3313 25 1 7.5487 4.0846 9.4679 26 1 8.6729 2.1892 8.4568 27 6 4.4560 3.2119 0.4243 28 6 4.0228 1.7718 0.0777 29 1 -0.3634 -1.0261 0.0580 30 1 -0.3633 0.5632 0.8596 31 1 -0.3634 0.4628 -0.9175 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.4812 2.6137 -1.5780 35 1 1.9133 3.6690 -1.5161 36 1 1.8201 0.8913 -2.7778 37 1 1.7786 2.4301 -3.6715 38 1 3.2293 1.9782 -2.7444 39 1 1.6786 2.0341 2.4057 40 1 0.4689 2.8867 1.4075 41 1 2.0816 4.4530 2.5852 42 1 2.1084 4.6124 0.8121 43 1 6.4632 4.0765 2.1159 44 1 6.0861 2.3799 2.5000 45 1 8.1218 2.8111 2.2704 46 1 10.5148 2.3473 2.6131 47 1 13.5795 1.9993 4.0316 48 1 12.1197 1.2374 3.3564 49 1 12.4955 2.9346 2.9737 50 1 10.1229 3.3767 6.7416 51 1 6.5480 3.4032 6.7264 52 1 6.7440 5.5935 5.7940 53 1 4.1915 3.8807 -0.3946 54 1 5.5334 3.2420 0.5866 55 1 4.3675 1.0834 0.8494 56 1 4.4364 1.4840 -0.8888 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_4974302.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:39 Heat of formation + Delta-G solvation = -147.742466 kcal Electronic energy + Delta-G solvation = -34114.254163 eV Core-core repulsion = 29727.008795 eV Total energy + Delta-G solvation = -4387.245369 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88672 -41.09968 -39.91322 -38.19355 -37.35310 -36.91322 -33.70830 -33.03618 -32.82330 -32.53289 -31.11394 -30.50172 -28.93553 -27.95775 -26.59606 -24.49948 -24.36670 -23.35664 -23.34715 -23.01442 -22.40997 -20.24551 -19.63433 -18.90099 -18.27079 -18.03499 -17.66103 -17.47429 -16.95211 -16.65352 -16.27014 -15.99205 -15.66196 -15.60593 -15.52836 -15.39280 -15.28184 -14.95413 -14.79907 -14.34052 -14.31538 -14.18562 -14.11583 -14.02739 -13.81730 -13.57456 -13.47476 -13.41964 -13.14761 -12.96933 -12.79529 -12.72282 -12.52460 -12.30266 -12.28690 -12.26681 -12.16080 -12.01089 -11.83298 -11.69155 -11.45683 -11.23831 -11.11198 -10.94023 -10.41837 -10.28818 -10.26576 -10.11556 -9.73526 -8.83507 0.04495 0.31926 1.14523 1.40876 1.44100 1.46797 1.48685 1.77823 1.87679 1.90173 1.95309 2.31485 2.43682 2.53510 2.62315 3.30858 3.53006 3.69704 3.85047 3.88867 4.03355 4.07642 4.12014 4.13679 4.18383 4.21311 4.30809 4.33268 4.38445 4.41934 4.42083 4.42877 4.49700 4.52335 4.60276 4.65276 4.67052 4.71532 4.74379 4.76385 4.84958 4.87049 4.97331 5.04191 5.11307 5.17497 5.18668 5.25558 5.27567 5.34803 5.36666 5.39666 5.45966 5.51802 5.55824 5.67043 6.10213 6.26463 6.42610 6.55953 7.03847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.426 4.426 3 Si 1.058 2.942 4 C -0.414 4.414 5 C -0.151 4.151 6 C -0.440 4.440 7 C 0.116 3.884 8 N -0.602 5.602 9 C 0.507 3.493 10 O -0.571 6.571 11 C 0.036 3.964 12 O -0.313 6.313 13 C 0.095 3.905 14 C -0.157 4.157 15 C -0.159 4.159 16 C 0.089 3.911 17 O -0.339 6.339 18 C 0.017 3.983 19 C -0.137 4.137 20 C -0.116 4.116 21 C -0.089 4.089 22 O -0.549 6.549 23 Si 1.035 2.965 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.239 1.239 27 C 0.100 3.900 28 C -0.427 4.427 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.113 0.887 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.135 0.865 51 H 0.077 0.923 52 H 0.375 0.625 53 H 0.104 0.896 54 H 0.108 0.892 55 H 0.080 0.920 56 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -3.722 -11.360 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.511 4.511 3 Si 1.248 2.752 4 C -0.501 4.501 5 C -0.208 4.208 6 C -0.524 4.524 7 C -0.006 4.006 8 N -0.336 5.336 9 C 0.295 3.705 10 O -0.449 6.449 11 C -0.042 4.042 12 O -0.226 6.226 13 C 0.050 3.950 14 C -0.176 4.176 15 C -0.178 4.178 16 C 0.044 3.956 17 O -0.253 6.253 18 C -0.077 4.077 19 C -0.155 4.155 20 C -0.117 4.117 21 C -0.196 4.196 22 O -0.356 6.356 23 Si 0.856 3.144 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.162 1.162 27 C -0.021 4.021 28 C -0.515 4.515 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.187 0.813 46 H 0.181 0.819 47 H 0.131 0.869 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.153 0.847 51 H 0.095 0.905 52 H 0.224 0.776 53 H 0.122 0.878 54 H 0.126 0.874 55 H 0.099 0.901 56 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.693 -3.601 -9.209 10.248 hybrid contribution -0.938 -0.055 -0.973 1.353 sum 1.754 -3.657 -10.181 10.959 Atomic orbital electron populations 1.21419 0.95761 1.01626 1.02110 1.26207 1.00494 1.19919 1.04469 0.78691 0.66850 0.65111 0.64560 1.26059 1.05309 1.07108 1.11600 1.21431 1.01802 1.00323 0.97223 1.26989 1.04776 1.04097 1.16537 1.21232 0.78485 0.97294 1.03555 1.48048 1.09735 1.66650 1.09197 1.20614 0.89095 0.77212 0.83559 1.90746 1.72138 1.47805 1.34246 1.22839 0.91544 1.05408 0.84392 1.86097 1.21267 1.84281 1.30982 1.18734 0.82867 0.99473 0.93903 1.21399 0.94014 1.02878 0.99266 1.21410 0.96132 1.03757 0.96452 1.18972 0.83992 0.98488 0.94141 1.86081 1.17932 1.82685 1.38608 1.23361 0.96549 1.00201 0.87585 1.20279 0.91960 1.03870 0.99436 1.19419 0.93674 1.04279 0.94373 1.25297 1.02644 0.84913 1.06773 1.86629 1.80359 1.21916 1.46683 0.84207 0.77548 0.80144 0.72533 1.18440 1.19626 1.16219 1.21894 0.98405 0.95956 0.85878 1.26774 1.20286 0.98221 1.06208 0.93683 0.92717 0.91815 0.90162 0.91601 0.91101 0.90024 0.92639 0.93551 0.91028 0.92359 0.89265 0.91804 0.88198 0.85664 0.86091 0.81266 0.81912 0.86898 0.91231 0.91350 0.84738 0.90472 0.77637 0.87804 0.87415 0.90137 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 9.29 71.98 0.67 1.06 16 2 C -0.43 1.97 5.17 71.98 0.37 2.35 16 3 Si 1.06 -8.95 8.66 68.60 0.59 -8.36 16 4 C -0.41 3.35 5.17 71.98 0.37 3.72 16 5 C -0.15 1.16 9.29 71.98 0.67 1.83 16 6 C -0.44 1.15 5.22 72.26 0.38 1.52 16 7 C 0.12 -0.13 5.87 86.70 0.51 0.38 16 8 N -0.60 1.76 2.60 -818.59 -2.13 -0.37 16 9 C 0.51 1.69 7.72 87.66 0.68 2.37 16 10 O -0.57 -8.25 15.78 16.00 0.25 -8.00 16 11 C 0.04 -0.11 3.53 71.24 0.25 0.14 16 12 O -0.31 -1.47 8.56 -74.30 -0.64 -2.10 16 13 C 0.10 0.35 6.62 22.49 0.15 0.50 16 14 C -0.16 0.36 9.03 22.36 0.20 0.56 16 15 C -0.16 0.21 9.03 22.36 0.20 0.42 16 16 C 0.09 0.39 6.69 22.49 0.15 0.54 16 17 O -0.34 -1.42 10.50 -93.34 -0.98 -2.40 16 18 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 19 C -0.14 -0.97 8.59 22.35 0.19 -0.78 16 20 C -0.12 -0.82 5.28 -19.78 -0.10 -0.92 16 21 C -0.09 -0.73 2.33 71.24 0.17 -0.56 16 22 O -0.55 -5.75 12.65 -148.98 -1.89 -7.63 16 23 Si 1.04 6.93 25.75 68.60 1.77 8.69 16 24 H -0.26 -2.03 6.73 99.48 0.67 -1.36 16 25 H -0.27 -2.40 7.11 99.48 0.71 -1.70 16 26 H -0.24 -1.16 7.11 99.48 0.71 -0.46 16 27 C 0.10 -1.10 5.78 86.87 0.50 -0.60 16 28 C -0.43 4.79 5.24 72.43 0.38 5.17 16 29 H 0.04 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.05 -0.15 7.88 -2.38 -0.02 -0.16 16 31 H 0.06 -0.27 8.03 -2.39 -0.02 -0.29 16 32 H 0.08 -0.45 7.79 -2.39 -0.02 -0.47 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 35 H 0.08 -0.76 7.96 -2.39 -0.02 -0.78 16 36 H 0.05 -0.42 7.76 -2.38 -0.02 -0.43 16 37 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.07 -0.78 7.50 -2.39 -0.02 -0.79 16 39 H 0.06 0.10 7.99 -2.39 -0.02 0.09 16 40 H 0.09 -0.31 7.99 -2.39 -0.02 -0.33 16 41 H 0.06 0.35 6.91 -2.39 -0.02 0.34 16 42 H 0.10 -0.62 8.05 -2.39 -0.02 -0.64 16 43 H 0.13 -1.25 7.02 -2.39 -0.02 -1.26 16 44 H 0.12 -1.08 7.50 -2.39 -0.02 -1.10 16 45 H 0.17 -1.77 6.29 -2.91 -0.02 -1.79 16 46 H 0.16 -1.23 6.29 -2.91 -0.02 -1.25 16 47 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.07 -0.53 7.65 -2.39 -0.02 -0.54 16 49 H 0.07 -0.50 7.67 -2.39 -0.02 -0.52 16 50 H 0.14 0.93 4.89 -2.91 -0.01 0.92 16 51 H 0.08 0.63 7.82 -2.39 -0.02 0.61 16 52 H 0.37 2.81 8.60 -74.06 -0.64 2.17 16 53 H 0.10 -1.49 8.05 -2.39 -0.02 -1.51 16 54 H 0.11 -1.67 5.77 -2.39 -0.01 -1.69 16 55 H 0.08 -0.81 7.99 -2.39 -0.02 -0.83 16 56 H 0.11 -1.68 7.49 -2.39 -0.02 -1.69 16 Total: 0.00 -23.59 436.36 4.78 -18.81 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: 0.95 Total: -17.37 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.85 Total: 18.73 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -2.13 Total: -0.37 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -3.25 Total: -20.13 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: 2.36 Total: 0.34 kcal Total: -23.59 4.78 -18.81 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_4974302.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.933 kcal (2) G-P(sol) polarization free energy of solvation -23.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds