Wall clock time and date at job start Tue Mar 9 2021 13:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 Si 1.86298 * 109.46851 * 2 1 4 4 C 1.86303 * 109.90690 * 298.66010 * 3 2 1 5 5 C 1.52996 * 109.47103 * 298.39228 * 4 3 2 6 6 C 1.87349 * 109.92090 * 59.76930 * 3 2 1 7 7 C 1.53822 * 107.30968 * 166.18479 * 6 3 2 8 8 N 1.46297 * 109.23094 * 306.11335 * 7 6 3 9 9 C 1.34777 * 119.08842 * 252.35641 * 8 7 6 10 10 O 1.21283 * 119.99635 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00560 * 180.02562 * 9 8 7 12 12 O 1.42897 * 109.47330 * 179.97438 * 11 9 8 13 13 C 1.35993 * 116.99906 * 179.97438 * 12 11 9 14 14 C 1.38517 * 120.07310 * 359.97438 * 13 12 11 15 15 C 1.38294 * 119.99938 * 180.25701 * 14 13 12 16 16 C 1.38210 * 120.14420 * 359.44176 * 15 14 13 17 17 C 1.50700 * 119.92583 * 180.28091 * 16 15 14 18 18 O 1.42895 * 109.47080 * 120.27864 * 17 16 15 19 19 Si 1.86294 * 109.47082 * 0.27764 * 17 16 15 20 20 H 1.48501 * 109.47483 * 299.99939 * 19 17 16 21 21 H 1.48498 * 109.47165 * 60.00164 * 19 17 16 22 22 H 1.48505 * 109.47169 * 180.02562 * 19 17 16 23 23 C 1.38286 * 120.14314 * 0.56279 * 16 15 14 24 24 C 1.38521 * 120.00481 * 359.71626 * 23 16 15 25 25 O 1.35986 * 120.07507 * 179.97438 * 24 23 16 26 26 C 1.42902 * 117.00144 * 0.02562 * 25 24 23 27 27 C 1.46302 * 121.83166 * 72.62976 * 8 7 6 28 28 C 1.54330 * 108.95597 * 287.40464 * 27 8 7 29 29 H 1.09002 * 109.47406 * 303.22866 * 1 2 3 30 30 H 1.09000 * 109.47331 * 63.23410 * 1 2 3 31 31 H 1.09005 * 109.47265 * 183.23298 * 1 2 3 32 32 H 1.08999 * 109.46950 * 240.00048 * 2 1 3 33 33 H 1.08998 * 109.46816 * 120.00380 * 2 1 3 34 34 H 1.08999 * 109.47182 * 58.39346 * 4 3 2 35 35 H 1.08999 * 109.46961 * 178.39624 * 4 3 2 36 36 H 1.09006 * 109.47696 * 298.44469 * 5 4 3 37 37 H 1.09006 * 109.47581 * 58.44579 * 5 4 3 38 38 H 1.09003 * 109.47313 * 178.44585 * 5 4 3 39 39 H 1.08994 * 109.88997 * 46.73505 * 6 3 2 40 40 H 1.09000 * 109.88797 * 285.63965 * 6 3 2 41 41 H 1.08995 * 109.51400 * 186.18351 * 7 6 3 42 42 H 1.09004 * 109.54893 * 66.06223 * 7 6 3 43 43 H 1.08995 * 109.46967 * 59.99358 * 11 9 8 44 44 H 1.09000 * 109.46453 * 299.99623 * 11 9 8 45 45 H 1.08000 * 120.00362 * 359.97438 * 14 13 12 46 46 H 1.07998 * 119.92165 * 179.70008 * 15 14 13 47 47 H 1.09002 * 109.46862 * 240.27971 * 17 16 15 48 48 H 0.96701 * 114.00061 * 180.02562 * 18 17 16 49 49 H 1.08005 * 119.99683 * 179.74117 * 23 16 15 50 50 H 1.08999 * 109.46860 * 299.99981 * 26 25 24 51 51 H 1.08996 * 109.46955 * 60.00070 * 26 25 24 52 52 H 1.09002 * 109.46856 * 180.02562 * 26 25 24 53 53 H 1.09008 * 109.50758 * 47.29098 * 27 8 7 54 54 H 1.08994 * 109.51801 * 167.44320 * 27 8 7 55 55 H 1.08997 * 109.96892 * 294.51751 * 28 27 8 56 56 H 1.08997 * 109.81754 * 173.40441 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1509 1.7565 0.0000 4 6 1.5702 2.6346 -1.5371 5 6 2.1406 1.9331 -2.7714 6 6 1.5276 2.6539 1.5218 7 6 2.3384 3.9547 1.6504 8 7 3.7661 3.6352 1.6432 9 6 4.4666 3.7391 2.7899 10 8 3.9125 4.0937 3.8088 11 6 5.9384 3.4157 2.8059 12 8 6.4525 3.6008 4.1263 13 6 7.7755 3.3490 4.3146 14 6 8.5609 2.9325 3.2523 15 6 9.9051 2.6717 3.4467 16 6 10.4703 2.8367 4.6971 17 6 11.9370 2.5572 4.9020 18 8 12.5876 3.7423 5.3648 19 14 12.6981 2.0207 3.2885 20 1 12.0220 0.7891 2.8075 21 1 12.5359 3.0999 2.2815 22 1 14.1433 1.7446 3.4905 23 6 9.6918 3.2522 5.7618 24 6 8.3436 3.5096 5.5752 25 8 7.5766 3.9177 6.6214 26 6 8.2269 4.0608 7.8858 27 6 4.4559 3.2118 0.4244 28 6 4.0228 1.7717 0.0778 29 1 -0.3634 0.5631 0.8596 30 1 -0.3634 0.4628 -0.9175 31 1 -0.3634 -1.0261 0.0580 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.4812 2.6136 -1.5780 35 1 1.9133 3.6689 -1.5161 36 1 3.2294 1.9782 -2.7444 37 1 1.8202 0.8912 -2.7778 38 1 1.7786 2.4301 -3.6715 39 1 1.6784 2.0341 2.4056 40 1 0.4689 2.8866 1.4074 41 1 2.0816 4.4530 2.5851 42 1 2.1083 4.6123 0.8121 43 1 6.4631 4.0766 2.1161 44 1 6.0860 2.3799 2.5001 45 1 8.1226 2.8071 2.2733 46 1 10.5152 2.3424 2.6187 47 1 12.0560 1.7650 5.6411 48 1 13.5364 3.6358 5.5181 49 1 10.1351 3.3763 6.7388 50 1 8.6484 3.1021 8.1880 51 1 9.0249 4.7985 7.8024 52 1 7.5032 4.3904 8.6313 53 1 4.1914 3.8807 -0.3947 54 1 5.5333 3.2420 0.5866 55 1 4.3674 1.0834 0.8495 56 1 4.4364 1.4840 -0.8887 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_60476.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:14 Heat of formation + Delta-G solvation = -143.378919 kcal Electronic energy + Delta-G solvation = -33791.447217 eV Core-core repulsion = 29404.391066 eV Total energy + Delta-G solvation = -4387.056151 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.88268 -41.11097 -39.42210 -38.78109 -37.39578 -36.99625 -33.70678 -33.04266 -32.62529 -32.00188 -31.47352 -30.71607 -29.05271 -28.40842 -26.15403 -24.50325 -24.19462 -23.35873 -23.34333 -23.07124 -22.34244 -20.24638 -19.85461 -18.61478 -18.22958 -18.12786 -17.70201 -17.55815 -16.90963 -16.68897 -16.25007 -15.91671 -15.89992 -15.71675 -15.52856 -15.37000 -15.27490 -14.90203 -14.66633 -14.42548 -14.29241 -14.19491 -14.13174 -13.98906 -13.82885 -13.59470 -13.46742 -13.39763 -13.10470 -12.79464 -12.76688 -12.72247 -12.54897 -12.31552 -12.25893 -12.21593 -12.14851 -12.02178 -12.00616 -11.84069 -11.68990 -11.66086 -10.98452 -10.42336 -10.31364 -10.29131 -10.27049 -9.78230 -9.75333 -8.92175 0.15714 0.24345 1.20005 1.39106 1.44794 1.50941 1.57047 1.76896 1.87710 1.95084 1.95382 2.30253 2.40444 2.52240 2.61832 3.29280 3.45039 3.72033 3.77579 3.89871 3.96320 4.00953 4.12511 4.16126 4.18369 4.25979 4.29457 4.32843 4.34825 4.38834 4.41168 4.50064 4.51252 4.52633 4.60432 4.60863 4.65027 4.67173 4.70497 4.74795 4.85040 4.86155 4.97485 5.03213 5.07289 5.17798 5.25957 5.27616 5.34409 5.36245 5.36759 5.45819 5.51821 5.52810 5.57833 5.67354 5.94421 6.19858 6.50353 6.83733 7.01961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.425 4.425 3 Si 1.058 2.942 4 C -0.413 4.413 5 C -0.151 4.151 6 C -0.441 4.441 7 C 0.115 3.885 8 N -0.601 5.601 9 C 0.507 3.493 10 O -0.574 6.574 11 C 0.033 3.967 12 O -0.313 6.313 13 C 0.082 3.918 14 C -0.160 4.160 15 C -0.126 4.126 16 C -0.082 4.082 17 C -0.085 4.085 18 O -0.564 6.564 19 Si 0.983 3.017 20 H -0.251 1.251 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.148 4.148 24 C 0.079 3.921 25 O -0.334 6.334 26 C 0.019 3.981 27 C 0.098 3.902 28 C -0.428 4.428 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.173 0.827 46 H 0.145 0.855 47 H 0.094 0.906 48 H 0.398 0.602 49 H 0.149 0.851 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.111 0.889 53 H 0.106 0.894 54 H 0.107 0.893 55 H 0.079 0.921 56 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -3.589 -7.009 9.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.510 4.510 3 Si 1.248 2.752 4 C -0.499 4.499 5 C -0.208 4.208 6 C -0.524 4.524 7 C -0.006 4.006 8 N -0.336 5.336 9 C 0.295 3.705 10 O -0.453 6.453 11 C -0.044 4.044 12 O -0.227 6.227 13 C 0.036 3.964 14 C -0.179 4.179 15 C -0.144 4.144 16 C -0.082 4.082 17 C -0.194 4.194 18 O -0.373 6.373 19 Si 0.807 3.193 20 H -0.175 1.175 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.166 4.166 24 C 0.033 3.967 25 O -0.249 6.249 26 C -0.075 4.075 27 C -0.022 4.022 28 C -0.516 4.516 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.190 0.810 46 H 0.162 0.838 47 H 0.112 0.888 48 H 0.249 0.751 49 H 0.166 0.834 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.129 0.871 53 H 0.124 0.876 54 H 0.125 0.875 55 H 0.098 0.902 56 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.826 -3.313 -7.153 8.762 hybrid contribution 0.072 -0.054 1.126 1.129 sum 3.898 -3.367 -6.027 7.928 Atomic orbital electron populations 1.21420 0.95692 1.01657 1.02128 1.26186 1.00544 1.19745 1.04510 0.78703 0.66730 0.65258 0.64550 1.26035 1.05354 1.07071 1.11490 1.21431 1.01794 1.00357 0.97193 1.27006 1.04797 1.04008 1.16629 1.21245 0.78436 0.97441 1.03510 1.48058 1.09773 1.66641 1.09090 1.20639 0.89123 0.77186 0.83596 1.90742 1.72172 1.47872 1.34523 1.22872 0.91658 1.05437 0.84458 1.86226 1.21282 1.84292 1.30899 1.18568 0.83389 1.01835 0.92567 1.21293 0.94263 1.03632 0.98675 1.20963 0.95223 1.01615 0.96580 1.19338 0.94856 1.00857 0.93183 1.24843 0.91956 0.91646 1.10956 1.86461 1.27594 1.33878 1.89382 0.85220 0.79071 0.79477 0.75575 1.17474 1.18978 1.18258 1.21030 0.90565 1.03532 1.01500 1.18655 0.90560 1.00743 0.86717 1.86191 1.38016 1.82600 1.18059 1.23309 0.99815 1.02246 0.82121 1.21920 0.98405 0.96123 0.85782 1.26793 1.20469 0.98074 1.06238 0.92768 0.91735 0.93618 0.90044 0.91633 0.90988 0.90040 0.91063 0.92568 0.93486 0.92485 0.89128 0.92030 0.88007 0.85731 0.85841 0.80981 0.83768 0.88784 0.75142 0.83360 0.91379 0.91777 0.87092 0.87626 0.87524 0.90204 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 9.29 71.98 0.67 0.94 16 2 C -0.42 1.52 5.17 71.98 0.37 1.89 16 3 Si 1.06 -7.41 8.66 68.60 0.59 -6.81 16 4 C -0.41 2.91 5.17 71.98 0.37 3.28 16 5 C -0.15 1.03 9.29 71.98 0.67 1.70 16 6 C -0.44 0.33 5.22 72.26 0.38 0.71 16 7 C 0.12 0.15 5.87 86.69 0.51 0.66 16 8 N -0.60 -0.10 2.61 -818.60 -2.13 -2.23 16 9 C 0.51 3.96 7.72 87.66 0.68 4.64 16 10 O -0.57 -11.36 15.78 16.00 0.25 -11.11 16 11 C 0.03 0.06 3.53 71.24 0.25 0.31 16 12 O -0.31 -3.75 9.46 -67.07 -0.63 -4.39 16 13 C 0.08 0.72 6.70 22.57 0.15 0.87 16 14 C -0.16 -0.24 9.04 22.35 0.20 -0.03 16 15 C -0.13 -0.18 8.66 22.28 0.19 0.01 16 16 C -0.08 -0.28 5.42 -19.86 -0.11 -0.39 16 17 C -0.08 0.14 2.81 71.24 0.20 0.34 16 18 O -0.56 0.30 12.74 -148.98 -1.90 -1.60 16 19 Si 0.98 -3.24 25.06 68.60 1.72 -1.52 16 20 H -0.25 0.78 7.11 99.48 0.71 1.49 16 21 H -0.27 0.07 7.11 99.48 0.71 0.78 16 22 H -0.26 0.83 7.11 99.48 0.71 1.53 16 23 C -0.15 -0.89 8.60 22.35 0.19 -0.70 16 24 C 0.08 0.83 6.70 22.57 0.15 0.99 16 25 O -0.33 -4.33 10.28 -79.55 -0.82 -5.15 16 26 C 0.02 0.07 9.81 113.37 1.11 1.18 16 27 C 0.10 -0.84 5.78 86.87 0.50 -0.34 16 28 C -0.43 3.99 5.24 72.43 0.38 4.37 16 29 H 0.05 -0.09 7.88 -2.39 -0.02 -0.11 16 30 H 0.06 -0.23 8.03 -2.39 -0.02 -0.25 16 31 H 0.04 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.08 -0.39 7.79 -2.39 -0.02 -0.41 16 33 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.08 -0.67 7.96 -2.39 -0.02 -0.69 16 36 H 0.07 -0.70 7.50 -2.38 -0.02 -0.72 16 37 H 0.06 -0.38 7.76 -2.38 -0.02 -0.40 16 38 H 0.05 -0.24 8.14 -2.39 -0.02 -0.25 16 39 H 0.06 0.22 7.99 -2.39 -0.02 0.20 16 40 H 0.09 -0.19 7.99 -2.39 -0.02 -0.20 16 41 H 0.06 0.51 6.91 -2.39 -0.02 0.49 16 42 H 0.10 -0.44 8.05 -2.38 -0.02 -0.45 16 43 H 0.13 -0.67 7.03 -2.39 -0.02 -0.68 16 44 H 0.12 -0.61 7.50 -2.39 -0.02 -0.63 16 45 H 0.17 -1.18 6.30 -2.91 -0.02 -1.19 16 46 H 0.14 -0.44 4.87 -2.91 -0.01 -0.46 16 47 H 0.09 -0.52 7.96 -2.39 -0.02 -0.54 16 48 H 0.40 -3.86 8.74 -74.06 -0.65 -4.50 16 49 H 0.15 0.46 6.30 -2.91 -0.02 0.44 16 50 H 0.07 0.02 7.66 -2.39 -0.02 0.00 16 51 H 0.06 0.09 7.66 -2.39 -0.02 0.07 16 52 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 53 H 0.11 -1.30 8.05 -2.38 -0.02 -1.32 16 54 H 0.11 -1.36 5.77 -2.39 -0.01 -1.37 16 55 H 0.08 -0.64 7.99 -2.39 -0.02 -0.66 16 56 H 0.11 -1.52 7.49 -2.39 -0.02 -1.54 16 Total: 0.00 -29.28 437.47 4.94 -24.34 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 0.98 Total: -11.95 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.87 Total: 20.42 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -2.13 Total: -2.23 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -3.10 Total: -22.25 kcal Atomic # 14 Polarization: -10.65 SS G_CDS: 2.31 Total: -8.34 kcal Total: -29.28 4.94 -24.34 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_60476.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.039 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds