Wall clock time and date at job start Tue Mar 9 2021 13:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 Si 1.86296 * 109.47359 * 2 1 4 4 C 1.86307 * 109.90569 * 298.65779 * 3 2 1 5 5 C 1.53000 * 109.46978 * 298.39742 * 4 3 2 6 6 C 1.87347 * 109.92213 * 59.76503 * 3 2 1 7 7 C 1.53824 * 107.31118 * 166.19118 * 6 3 2 8 8 N 1.46306 * 109.22660 * 306.11323 * 7 6 3 9 9 C 1.34781 * 119.08195 * 252.35076 * 8 7 6 10 10 O 1.21275 * 120.00077 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99760 * 179.97438 * 9 8 7 12 12 N 1.46495 * 109.47013 * 180.02562 * 11 9 8 13 13 C 1.36831 * 125.06213 * 265.02590 * 12 11 9 14 14 C 1.34243 * 109.93551 * 179.73380 * 13 12 11 15 15 C 1.50697 * 126.49894 * 180.30109 * 14 13 12 16 16 O 1.42891 * 109.47302 * 104.97613 * 15 14 13 17 17 Si 1.86303 * 109.47059 * 344.97595 * 15 14 13 18 18 H 1.48503 * 109.47033 * 60.00325 * 17 15 14 19 19 H 1.48505 * 109.47178 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47530 * 300.00089 * 17 15 14 21 21 C 1.46482 * 106.99746 * 0.26881 * 14 13 12 22 22 C 1.39590 * 134.03354 * 180.02562 * 21 14 13 23 23 C 1.36662 * 119.76510 * 179.97438 * 22 21 14 24 24 C 1.38784 * 120.52785 * 0.02562 * 23 22 21 25 25 C 1.37782 * 120.66833 * 359.97438 * 24 23 22 26 26 C 1.37694 * 125.06297 * 85.23229 * 12 11 9 27 27 C 1.46300 * 121.82824 * 72.63012 * 8 7 6 28 28 C 1.54318 * 108.95438 * 287.40216 * 27 8 7 29 29 H 1.08997 * 109.47248 * 183.24074 * 1 2 3 30 30 H 1.09007 * 109.46758 * 303.23735 * 1 2 3 31 31 H 1.08995 * 109.46665 * 63.23520 * 1 2 3 32 32 H 1.08999 * 109.46702 * 239.99403 * 2 1 3 33 33 H 1.09002 * 109.46893 * 119.99920 * 2 1 3 34 34 H 1.09001 * 109.47102 * 58.38976 * 4 3 2 35 35 H 1.08998 * 109.47080 * 178.39499 * 4 3 2 36 36 H 1.09001 * 109.47090 * 178.44471 * 5 4 3 37 37 H 1.09003 * 109.46478 * 298.43872 * 5 4 3 38 38 H 1.08996 * 109.47599 * 58.44018 * 5 4 3 39 39 H 1.08997 * 109.89172 * 46.74340 * 6 3 2 40 40 H 1.09000 * 109.95260 * 285.67285 * 6 3 2 41 41 H 1.08995 * 109.51501 * 186.18542 * 7 6 3 42 42 H 1.09002 * 109.55245 * 66.05965 * 7 6 3 43 43 H 1.09007 * 109.46364 * 60.00561 * 11 9 8 44 44 H 1.09000 * 109.47195 * 300.01051 * 11 9 8 45 45 H 1.07998 * 125.03194 * 0.02562 * 13 12 11 46 46 H 1.09002 * 109.47207 * 224.98220 * 15 14 13 47 47 H 0.96701 * 114.00120 * 300.00200 * 16 15 14 48 48 H 1.07999 * 120.12055 * 359.97438 * 22 21 14 49 49 H 1.08004 * 119.73556 * 180.02562 * 23 22 21 50 50 H 1.08003 * 119.66412 * 180.02562 * 24 23 22 51 51 H 1.07999 * 120.11405 * 179.97438 * 25 24 23 52 52 H 1.08999 * 109.50739 * 47.29318 * 27 8 7 53 53 H 1.09003 * 109.50914 * 167.44045 * 27 8 7 54 54 H 1.09001 * 109.97323 * 294.51142 * 28 27 8 55 55 H 1.08999 * 109.81598 * 173.41298 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 14 2.1511 1.7564 0.0000 4 6 1.5706 2.6345 -1.5372 5 6 2.1408 1.9328 -2.7714 6 6 1.5278 2.6539 1.5218 7 6 2.3386 3.9547 1.6502 8 7 3.7664 3.6352 1.6430 9 6 4.4667 3.7392 2.7899 10 8 3.9125 4.0931 3.8089 11 6 5.9383 3.4146 2.8062 12 7 6.4651 3.6036 4.1600 13 6 7.0732 4.7418 4.6150 14 6 7.4323 4.5869 5.8992 15 6 8.1215 5.6083 6.7667 16 8 7.1801 6.1657 7.6858 17 14 8.8202 6.9629 5.6954 18 1 7.7195 7.6155 4.9418 19 1 9.4989 7.9698 6.5503 20 1 9.7986 6.3837 4.7401 21 6 7.0262 3.2370 6.2975 22 6 7.1226 2.5046 7.4819 23 6 6.6324 1.2300 7.5332 24 6 6.0397 0.6571 6.4166 25 6 5.9342 1.3620 5.2375 26 6 6.4257 2.6610 5.1629 27 6 4.4561 3.2117 0.4243 28 6 4.0229 1.7717 0.0778 29 1 -0.3633 -1.0260 0.0581 30 1 -0.3633 0.5633 0.8596 31 1 -0.3632 0.4628 -0.9175 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.4815 2.6136 -1.5781 35 1 1.9137 3.6689 -1.5162 36 1 1.7788 2.4298 -3.6715 37 1 3.2295 1.9780 -2.7444 38 1 1.8203 0.8911 -2.7777 39 1 1.6786 2.0342 2.4056 40 1 0.4689 2.8867 1.4086 41 1 2.0818 4.4531 2.5849 42 1 2.1086 4.6123 0.8119 43 1 6.4636 4.0749 2.1160 44 1 6.0853 2.3786 2.5007 45 1 7.2357 5.6345 4.0292 46 1 8.9296 5.1294 7.3198 47 1 6.4322 6.6090 7.2625 48 1 7.5829 2.9437 8.3547 49 1 6.7068 0.6639 8.4500 50 1 5.6566 -0.3511 6.4728 51 1 5.4717 0.9074 4.3739 52 1 4.1917 3.8805 -0.3947 53 1 5.5336 3.2419 0.5867 54 1 4.3676 1.0833 0.8495 55 1 4.4366 1.4838 -0.8886 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:57 Heat of formation + Delta-G solvation = -34.866664 kcal Electronic energy + Delta-G solvation = -33036.889319 eV Core-core repulsion = 28970.024804 eV Total energy + Delta-G solvation = -4066.864514 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57887 -40.99684 -38.13324 -37.73509 -37.28795 -34.23866 -33.72512 -32.90886 -32.45943 -31.39990 -30.44861 -30.24096 -28.69749 -25.87505 -24.51201 -24.10146 -23.54005 -23.37184 -23.21406 -22.45421 -20.82882 -20.16996 -18.72416 -18.46603 -17.82404 -17.32313 -16.82870 -16.54192 -16.42229 -16.06615 -15.66177 -15.55011 -15.44013 -15.41355 -15.04266 -14.81707 -14.75995 -14.54929 -14.48649 -14.32738 -14.20696 -14.10999 -13.83034 -13.68629 -13.44559 -13.28821 -13.08710 -12.81001 -12.74428 -12.71059 -12.57154 -12.33549 -12.31614 -12.18500 -12.14244 -12.03127 -11.90300 -11.71332 -11.68263 -11.12975 -10.56652 -10.43978 -10.31053 -10.29351 -10.27415 -9.74700 -9.17063 -8.63712 0.13080 0.63554 1.22527 1.36109 1.41372 1.49410 1.58441 1.67913 1.75837 1.85649 1.92123 1.95518 2.07129 2.59090 2.94062 3.33398 3.60109 3.62355 3.71316 3.80151 3.98551 4.06478 4.11737 4.15454 4.21298 4.28366 4.29031 4.36432 4.39975 4.47591 4.50084 4.51247 4.58186 4.59791 4.63584 4.67701 4.71673 4.72364 4.78432 4.82799 4.84217 4.90015 5.02314 5.13744 5.15420 5.23569 5.25355 5.32089 5.34654 5.43943 5.49852 5.50342 5.53902 5.65004 5.66164 5.73635 5.74912 6.11748 6.21113 6.30939 6.75368 7.01500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.426 4.426 3 Si 1.060 2.940 4 C -0.415 4.415 5 C -0.151 4.151 6 C -0.440 4.440 7 C 0.117 3.883 8 N -0.603 5.603 9 C 0.487 3.513 10 O -0.573 6.573 11 C 0.085 3.915 12 N -0.468 5.468 13 C 0.061 3.939 14 C -0.216 4.216 15 C -0.053 4.053 16 O -0.560 6.560 17 Si 0.993 3.007 18 H -0.248 1.248 19 H -0.273 1.273 20 H -0.248 1.248 21 C -0.115 4.115 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.106 4.106 25 C -0.137 4.137 26 C 0.091 3.909 27 C 0.100 3.900 28 C -0.427 4.427 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.192 0.808 46 H 0.110 0.890 47 H 0.384 0.616 48 H 0.124 0.876 49 H 0.138 0.862 50 H 0.145 0.855 51 H 0.129 0.871 52 H 0.103 0.897 53 H 0.109 0.891 54 H 0.080 0.920 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -1.171 -10.054 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.511 4.511 3 Si 1.250 2.750 4 C -0.501 4.501 5 C -0.208 4.208 6 C -0.523 4.523 7 C -0.005 4.005 8 N -0.336 5.336 9 C 0.274 3.726 10 O -0.452 6.452 11 C -0.040 4.040 12 N -0.150 5.150 13 C -0.064 4.064 14 C -0.223 4.223 15 C -0.163 4.163 16 O -0.366 6.366 17 Si 0.815 3.185 18 H -0.171 1.171 19 H -0.198 1.198 20 H -0.172 1.172 21 C -0.119 4.119 22 C -0.103 4.103 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.157 4.157 26 C -0.015 4.015 27 C -0.021 4.021 28 C -0.515 4.515 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.178 0.822 44 H 0.159 0.841 45 H 0.209 0.791 46 H 0.128 0.872 47 H 0.232 0.768 48 H 0.142 0.858 49 H 0.156 0.844 50 H 0.163 0.837 51 H 0.147 0.853 52 H 0.121 0.879 53 H 0.127 0.873 54 H 0.098 0.902 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.816 -0.600 -9.954 10.136 hybrid contribution -1.193 -0.361 0.438 1.321 sum 0.623 -0.961 -9.516 9.585 Atomic orbital electron populations 1.21417 0.95784 1.01641 1.02057 1.26213 1.00474 1.19940 1.04486 0.78660 0.66870 0.65059 0.64427 1.26061 1.05277 1.07101 1.11648 1.21429 1.01802 1.00325 0.97220 1.26992 1.04676 1.04141 1.16509 1.21181 0.78948 0.97177 1.03214 1.48150 1.09618 1.66360 1.09464 1.21489 0.90354 0.77309 0.83469 1.90772 1.72022 1.48093 1.34273 1.22086 0.91093 1.07979 0.82798 1.43458 1.49661 1.11672 1.10234 1.21993 0.98162 0.90993 0.95263 1.20842 1.10760 0.95811 0.94927 1.24542 0.94545 1.00077 0.97113 1.86458 1.38571 1.75783 1.35835 0.85146 0.79826 0.76137 0.77416 1.17095 1.19787 1.17150 1.19326 1.03678 0.94858 0.94019 1.20487 0.99245 0.94308 0.96272 1.20929 1.01142 0.95553 0.99657 1.21126 0.98915 1.00493 0.91984 1.20227 1.03863 0.91796 0.99857 1.18418 1.02122 0.92284 0.88629 1.21883 0.98447 0.95848 0.85878 1.26764 1.20169 0.98336 1.06189 0.93635 0.92805 0.91828 0.90148 0.91582 0.91154 0.90042 0.93527 0.91027 0.92641 0.92581 0.89506 0.92191 0.88403 0.82205 0.84113 0.79125 0.87209 0.76811 0.85817 0.84401 0.83733 0.85306 0.87855 0.87257 0.90163 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 9.29 71.98 0.67 1.03 16 2 C -0.43 1.92 5.17 71.98 0.37 2.29 16 3 Si 1.06 -8.89 8.66 68.60 0.59 -8.30 16 4 C -0.41 3.29 5.17 71.98 0.37 3.66 16 5 C -0.15 1.13 9.29 71.98 0.67 1.80 16 6 C -0.44 1.04 5.21 72.26 0.38 1.42 16 7 C 0.12 -0.14 5.87 86.69 0.51 0.37 16 8 N -0.60 2.15 2.61 -818.60 -2.13 0.02 16 9 C 0.49 1.09 7.71 87.66 0.68 1.77 16 10 O -0.57 -7.86 15.71 -3.02 -0.05 -7.91 16 11 C 0.08 -0.34 4.79 85.64 0.41 0.07 16 12 N -0.47 -1.91 2.27 -519.99 -1.18 -3.09 16 13 C 0.06 0.21 9.89 83.00 0.82 1.03 16 14 C -0.22 -1.49 5.57 -18.63 -0.10 -1.60 16 15 C -0.05 -0.21 3.06 71.24 0.22 0.00 16 16 O -0.56 -3.83 12.88 -148.98 -1.92 -5.75 16 17 Si 0.99 -0.22 26.08 68.60 1.79 1.57 16 18 H -0.25 0.37 7.03 99.48 0.70 1.07 16 19 H -0.27 -0.89 7.11 99.48 0.71 -0.19 16 20 H -0.25 0.17 7.11 99.48 0.71 0.87 16 21 C -0.11 -1.25 6.35 -20.20 -0.13 -1.38 16 22 C -0.08 -0.84 10.05 22.23 0.22 -0.62 16 23 C -0.15 -1.10 9.97 22.03 0.22 -0.88 16 24 C -0.11 -0.63 10.01 22.29 0.22 -0.40 16 25 C -0.14 -0.94 10.00 22.37 0.22 -0.71 16 26 C 0.09 0.81 6.81 39.03 0.27 1.08 16 27 C 0.10 -1.15 5.78 86.86 0.50 -0.65 16 28 C -0.43 4.79 5.24 72.43 0.38 5.17 16 29 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.05 -0.13 7.88 -2.38 -0.02 -0.15 16 31 H 0.06 -0.26 8.03 -2.39 -0.02 -0.27 16 32 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 35 H 0.08 -0.75 7.96 -2.39 -0.02 -0.77 16 36 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.07 -0.76 7.50 -2.39 -0.02 -0.78 16 38 H 0.05 -0.40 7.76 -2.39 -0.02 -0.42 16 39 H 0.06 0.13 7.99 -2.39 -0.02 0.11 16 40 H 0.09 -0.26 7.99 -2.39 -0.02 -0.28 16 41 H 0.06 0.35 6.91 -2.39 -0.02 0.34 16 42 H 0.10 -0.60 8.05 -2.39 -0.02 -0.62 16 43 H 0.16 -1.97 7.48 -2.38 -0.02 -1.99 16 44 H 0.14 -1.23 7.98 -2.39 -0.02 -1.25 16 45 H 0.19 -0.63 6.29 -2.91 -0.02 -0.65 16 46 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 47 H 0.38 0.51 8.70 -74.06 -0.64 -0.13 16 48 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 49 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 50 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 51 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 52 H 0.10 -1.52 8.05 -2.39 -0.02 -1.54 16 53 H 0.11 -1.75 5.77 -2.39 -0.01 -1.76 16 54 H 0.08 -0.81 7.99 -2.39 -0.02 -0.83 16 55 H 0.11 -1.63 7.49 -2.39 -0.02 -1.65 16 Total: 0.00 -25.24 434.71 4.97 -20.27 By element: Atomic # 1 Polarization: -11.24 SS G_CDS: 0.97 Total: -10.27 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.90 Total: 13.46 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -3.31 Total: -3.07 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.97 Total: -13.66 kcal Atomic # 14 Polarization: -9.11 SS G_CDS: 2.38 Total: -6.73 kcal Total: -25.24 4.97 -20.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.598 kcal (2) G-P(sol) polarization free energy of solvation -25.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds