Wall clock time and date at job start Tue Mar 9 2021 13:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46974 * 2 1 4 4 C 1.35899 * 116.99705 * 85.09355 * 3 2 1 5 5 C 1.38733 * 120.04849 * 174.22585 * 4 3 2 6 6 C 1.38148 * 119.93800 * 179.74104 * 5 4 3 7 7 C 1.38269 * 120.05824 * 0.50608 * 6 5 4 8 8 C 1.50693 * 119.94466 * 179.74061 * 7 6 5 9 9 O 1.42905 * 109.47476 * 245.02244 * 8 7 6 10 10 Si 1.86298 * 109.47410 * 5.02551 * 8 7 6 11 11 C 1.38265 * 120.10956 * 359.77078 * 7 6 5 12 12 C 1.38146 * 120.05388 * 359.97011 * 11 7 6 13 13 C 1.50703 * 109.47076 * 240.00231 * 2 1 3 14 14 O 1.21272 * 120.00210 * 112.51198 * 13 2 1 15 15 N 1.34779 * 119.99653 * 292.51221 * 13 2 1 16 16 C 1.47130 * 125.59183 * 175.09197 * 15 13 2 17 17 C 1.54583 * 107.36148 * 179.04230 * 16 15 13 18 18 C 1.53743 * 102.74715 * 339.15112 * 17 16 15 19 19 C 1.52318 * 116.25834 * 265.00068 * 18 17 16 20 20 C 1.54051 * 86.61074 * 216.60058 * 19 18 17 21 21 O 1.42896 * 113.56774 * 269.69234 * 20 19 18 22 22 C 1.52307 * 116.26352 * 162.65663 * 18 17 16 23 23 C 1.47704 * 125.59346 * 355.06203 * 15 13 2 24 24 H 1.09008 * 109.47091 * 185.67681 * 1 2 3 25 25 H 1.08994 * 109.47353 * 305.67303 * 1 2 3 26 26 H 1.08995 * 109.47522 * 65.67877 * 1 2 3 27 27 H 1.08997 * 109.47318 * 119.99992 * 2 1 3 28 28 H 1.07991 * 120.03316 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.97385 * 180.22567 * 6 5 4 30 30 H 1.09009 * 109.46902 * 125.02566 * 8 7 6 31 31 H 0.96702 * 113.99598 * 60.00442 * 9 8 7 32 32 H 1.48508 * 109.99877 * 58.67657 * 10 8 7 33 33 H 1.48505 * 110.00181 * 179.97438 * 10 8 7 34 34 H 1.07998 * 119.97083 * 179.97438 * 11 7 6 35 35 H 1.08003 * 120.02646 * 179.97438 * 12 11 7 36 36 H 1.09002 * 109.86898 * 59.59205 * 16 15 13 37 37 H 1.09004 * 109.97865 * 298.55149 * 16 15 13 38 38 H 1.09001 * 110.75531 * 97.46319 * 17 16 15 39 39 H 1.09002 * 110.75426 * 220.83555 * 17 16 15 40 40 H 1.09005 * 113.68169 * 331.02509 * 19 18 17 41 41 H 1.08993 * 113.69054 * 102.16717 * 19 18 17 42 42 H 1.09001 * 113.63557 * 138.95307 * 20 19 18 43 43 H 0.96700 * 114.00441 * 277.80715 * 21 20 19 44 44 H 1.08998 * 113.69530 * 257.81665 * 22 18 17 45 45 H 1.08999 * 113.68790 * 28.87061 * 22 18 17 46 46 H 1.09002 * 110.39535 * 321.38302 * 23 15 13 47 47 H 1.08990 * 110.39574 * 83.66979 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1143 1.9635 1.2065 5 6 2.6815 3.2266 1.2931 6 6 2.7853 3.8530 2.5200 7 6 2.3339 3.2180 3.6623 8 6 2.4537 3.9013 5.0000 9 8 3.3539 3.1662 5.8316 10 14 3.1034 5.6305 4.7582 11 6 1.7734 1.9568 3.5792 12 6 1.6626 1.3283 2.3540 13 6 2.0323 -0.7104 -1.2305 14 8 2.6136 -0.0890 -2.0946 15 7 1.8356 -2.0363 -1.3706 16 6 2.1807 -2.8324 -2.5588 17 6 1.7988 -4.2998 -2.2578 18 6 1.7499 -4.3293 -0.7215 19 6 3.0175 -4.7934 -0.0157 20 6 2.0889 -5.4717 1.0093 21 8 1.7485 -4.6327 2.1148 22 6 1.0132 -5.5049 -0.0930 23 6 1.2387 -2.9288 -0.3562 24 1 -0.3634 -1.0227 0.1017 25 1 -0.3634 0.5993 0.8348 26 1 -0.3634 0.4232 -0.9364 27 1 1.8934 -0.5138 0.8899 28 1 3.0382 3.7212 0.4019 29 1 3.2235 4.8378 2.5877 30 1 1.4735 3.9445 5.4750 31 1 4.2475 3.0874 5.4705 32 1 2.1925 6.3956 3.8692 33 1 3.2255 6.3153 6.0703 34 1 1.4220 1.4626 4.4729 35 1 1.2250 0.3429 2.2897 36 1 3.2505 -2.7607 -2.7549 37 1 1.6211 -2.4737 -3.4228 38 1 0.8228 -4.5393 -2.6800 39 1 2.5613 -4.9822 -2.6333 40 1 3.6119 -5.4957 -0.6002 41 1 3.6097 -3.9789 0.4014 42 1 2.4273 -6.4608 1.3180 43 1 2.4195 -4.6072 2.8106 44 1 0.0136 -5.2557 0.2630 45 1 1.0341 -6.4099 -0.7003 46 1 1.5767 -2.6493 0.6417 47 1 0.1508 -2.8931 -0.4118 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_10157680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:18 Heat of formation + Delta-G solvation = -81.705742 kcal Electronic energy + Delta-G solvation = -29552.963879 eV Core-core repulsion = 25476.100278 eV Total energy + Delta-G solvation = -4076.863601 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15910 -41.43304 -40.29438 -39.07076 -37.58501 -37.14801 -35.31504 -33.68695 -32.11371 -31.74214 -30.90786 -28.93942 -26.84418 -26.79349 -25.91636 -24.52236 -23.74469 -22.64476 -22.14005 -20.63310 -19.93215 -19.49859 -18.46405 -18.08574 -17.94837 -17.36303 -17.28388 -16.62977 -16.49596 -16.28358 -15.95172 -15.82391 -15.68285 -15.39411 -14.96788 -14.77052 -14.67560 -14.48770 -14.27138 -14.16182 -13.99225 -13.76635 -13.54515 -13.45617 -13.34798 -13.04281 -12.99233 -12.77883 -12.32223 -12.20864 -12.17593 -12.11070 -11.76926 -11.71655 -11.62767 -11.11777 -11.02610 -10.55171 -10.41117 -10.07519 -9.86233 -9.26877 -4.99478 0.21205 0.29282 1.27566 1.30681 1.33584 1.64090 1.96602 2.31117 2.61945 3.07111 3.16594 3.33877 3.45583 3.54514 3.57451 3.66594 3.71658 3.72506 3.79963 3.83413 3.88982 3.98763 4.14020 4.23185 4.27438 4.31260 4.43115 4.46629 4.48859 4.56169 4.56725 4.60482 4.70332 4.78937 4.81163 4.87767 4.92226 4.95741 4.97420 4.98104 5.12049 5.15219 5.19725 5.26118 5.28691 5.31981 5.45359 5.64735 6.17093 6.29372 6.78905 6.85846 6.89855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 O -0.312 6.312 4 C 0.117 3.883 5 C -0.158 4.158 6 C -0.074 4.074 7 C -0.160 4.160 8 C -0.064 4.064 9 O -0.555 6.555 10 Si 0.766 3.234 11 C -0.055 4.055 12 C -0.208 4.208 13 C 0.527 3.473 14 O -0.571 6.571 15 N -0.609 5.609 16 C 0.102 3.898 17 C -0.110 4.110 18 C -0.091 4.091 19 C -0.156 4.156 20 C 0.078 3.922 21 O -0.567 6.567 22 C -0.112 4.112 23 C 0.118 3.882 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.108 0.892 31 H 0.395 0.605 32 H -0.288 1.288 33 H -0.299 1.299 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -7.687 2.311 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 O -0.226 6.226 4 C 0.072 3.928 5 C -0.177 4.177 6 C -0.091 4.091 7 C -0.160 4.160 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.673 3.327 11 C -0.073 4.073 12 C -0.226 4.226 13 C 0.315 3.685 14 O -0.450 6.450 15 N -0.344 5.344 16 C -0.020 4.020 17 C -0.147 4.147 18 C -0.091 4.091 19 C -0.193 4.193 20 C 0.019 3.981 21 O -0.375 6.375 22 C -0.149 4.149 23 C -0.004 4.004 24 H 0.121 0.879 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.126 0.874 31 H 0.245 0.755 32 H -0.215 1.215 33 H -0.227 1.227 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.246 0.754 44 H 0.097 0.903 45 H 0.135 0.865 46 H 0.109 0.891 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.748 -6.299 1.775 6.587 hybrid contribution 0.014 -0.248 0.114 0.274 sum -0.734 -6.548 1.889 6.854 Atomic orbital electron populations 1.22333 0.90732 1.05431 1.04279 1.22246 0.97001 0.82048 0.97243 1.86177 1.81487 1.26741 1.28180 1.19310 0.96064 0.93349 0.84103 1.20604 1.03750 0.93896 0.99419 1.20983 0.97706 0.99522 0.90885 1.20354 1.03436 0.96706 0.95525 1.25016 0.97191 1.05888 0.89330 1.86462 1.25434 1.77011 1.47394 0.93815 0.88326 0.72590 0.77971 1.20986 0.95332 0.93845 0.97187 1.21480 1.06640 1.02461 0.92048 1.20186 0.79045 0.81310 0.87952 1.90731 1.43076 1.66350 1.44834 1.48503 1.61211 1.05824 1.18815 1.22124 1.00427 0.91938 0.87554 1.22514 1.04032 0.93292 0.94879 1.21863 0.98346 0.94093 0.94842 1.23503 0.95943 1.01087 0.98781 1.22878 0.95749 0.93234 0.86228 1.86386 1.49435 1.69413 1.32301 1.22865 0.98560 0.97988 0.95491 1.22242 0.98588 0.87866 0.91654 0.87936 0.89422 0.92081 0.86484 0.84567 0.83103 0.87415 0.75530 1.21538 1.22686 0.84244 0.83407 0.92382 0.91901 0.88858 0.88190 0.87824 0.91863 0.90108 0.75389 0.90272 0.86462 0.89133 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.15 8.98 71.98 0.65 0.79 16 2 C 0.07 0.28 2.03 29.85 0.06 0.34 16 3 O -0.31 -3.04 9.34 -73.48 -0.69 -3.72 16 4 C 0.12 0.69 6.58 22.50 0.15 0.83 16 5 C -0.16 -0.72 9.99 22.37 0.22 -0.50 16 6 C -0.07 -0.06 8.66 22.26 0.19 0.13 16 7 C -0.16 -0.12 5.35 -19.85 -0.11 -0.23 16 8 C -0.06 0.03 2.80 71.23 0.20 0.22 16 9 O -0.55 0.02 12.83 -148.98 -1.91 -1.89 16 10 Si 0.77 -1.03 29.80 68.60 2.04 1.02 16 11 C -0.06 -0.05 9.68 22.25 0.22 0.17 16 12 C -0.21 -0.30 8.22 22.36 0.18 -0.12 16 13 C 0.53 4.76 7.19 87.66 0.63 5.39 16 14 O -0.57 -11.03 16.85 15.93 0.27 -10.76 16 15 N -0.61 -1.52 3.34 -813.07 -2.71 -4.23 16 16 C 0.10 0.10 6.89 86.80 0.60 0.70 16 17 C -0.11 0.66 6.34 31.38 0.20 0.86 16 18 C -0.09 0.56 0.93 -52.25 -0.05 0.51 16 19 C -0.16 1.02 7.21 30.72 0.22 1.24 16 20 C 0.08 -0.59 5.27 31.28 0.16 -0.42 16 21 O -0.57 3.34 12.48 -148.98 -1.86 1.48 16 22 C -0.11 0.90 7.28 30.72 0.22 1.12 16 23 C 0.12 -0.45 4.73 86.32 0.41 -0.04 16 24 H 0.10 -0.57 6.10 -2.38 -0.01 -0.58 16 25 H 0.09 -0.19 7.00 -2.39 -0.02 -0.21 16 26 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 27 H 0.12 -0.12 5.61 -2.39 -0.01 -0.14 16 28 H 0.14 0.53 8.06 -2.92 -0.02 0.50 16 29 H 0.15 -0.58 4.90 -2.91 -0.01 -0.59 16 30 H 0.11 0.04 7.96 -2.38 -0.02 0.02 16 31 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 32 H -0.29 -1.12 7.11 99.48 0.71 -0.42 16 33 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 34 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 35 H 0.15 -0.44 5.51 -2.91 -0.02 -0.45 16 36 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.10 -0.83 7.99 -2.39 -0.02 -0.84 16 40 H 0.10 -0.85 8.05 -2.38 -0.02 -0.87 16 41 H 0.06 -0.23 8.12 -2.39 -0.02 -0.25 16 42 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.40 -4.84 9.12 -74.06 -0.68 -5.52 16 44 H 0.08 -0.53 8.12 -2.39 -0.02 -0.55 16 45 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 46 H 0.09 -0.38 6.42 -2.39 -0.02 -0.40 16 47 H 0.09 -0.51 7.13 -2.39 -0.02 -0.53 16 Total: 0.00 -24.33 372.70 -0.97 -25.30 By element: Atomic # 1 Polarization: -17.93 SS G_CDS: -0.27 Total: -18.20 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.16 Total: 11.02 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -2.71 Total: -4.23 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -4.19 Total: -14.90 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.04 Total: 1.02 kcal Total: -24.33 -0.97 -25.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_10157680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.402 kcal (2) G-P(sol) polarization free energy of solvation -24.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds