Wall clock time and date at job start Tue Mar 9 2021 13:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47113 * 119.99985 * 2 1 3 5 5 C 1.38611 * 119.84090 * 74.99474 * 4 2 1 6 6 F 1.35098 * 119.92055 * 0.02641 * 5 4 2 7 7 C 1.38113 * 120.16606 * 180.29441 * 5 4 2 8 8 C 1.39621 * 119.84638 * 359.43842 * 7 5 4 9 9 C 1.47701 * 120.15287 * 180.29352 * 8 7 5 10 10 O 1.21575 * 119.99690 * 216.39963 * 9 8 7 11 11 N 1.34772 * 119.99902 * 36.40261 * 9 8 7 12 12 C 1.47534 * 125.65946 * 4.98710 * 11 9 8 13 13 C 1.55356 * 104.88543 * 156.01995 * 12 11 9 14 14 C 1.53945 * 101.33751 * 36.02569 * 13 12 11 15 15 C 1.52503 * 115.78994 * 94.93602 * 14 13 12 16 16 C 1.54017 * 86.67559 * 93.34116 * 15 14 13 17 17 O 1.42908 * 113.57360 * 269.85612 * 16 15 14 18 18 C 1.52494 * 115.79995 * 196.45224 * 14 13 12 19 19 C 1.47343 * 125.65748 * 185.29744 * 11 9 8 20 20 C 1.39837 * 119.69255 * 0.56308 * 8 7 5 21 21 F 1.35099 * 120.08583 * 179.75063 * 20 8 7 22 22 C 1.38231 * 119.84376 * 255.02255 * 4 2 1 23 23 H 0.96701 * 113.99837 * 300.00661 * 1 2 3 24 24 H 1.09001 * 109.46936 * 240.00221 * 2 1 3 25 25 H 1.48496 * 109.99868 * 178.68214 * 3 2 1 26 26 H 1.48505 * 109.99672 * 299.99919 * 3 2 1 27 27 H 1.07994 * 120.07996 * 179.72671 * 7 5 4 28 28 H 1.09003 * 110.33434 * 274.98590 * 12 11 9 29 29 H 1.08990 * 110.33379 * 37.22987 * 12 11 9 30 30 H 1.09006 * 111.22043 * 277.95486 * 13 12 11 31 31 H 1.08997 * 110.96408 * 153.98665 * 13 12 11 32 32 H 1.09005 * 113.68074 * 207.78398 * 15 14 13 33 33 H 1.09001 * 113.67777 * 338.89815 * 15 14 13 34 34 H 1.09004 * 113.64677 * 139.09451 * 16 15 14 35 35 H 0.96703 * 113.99773 * 277.75736 * 17 16 15 36 36 H 1.09003 * 113.67940 * 21.11318 * 18 14 13 37 37 H 1.09005 * 113.68037 * 152.12808 * 18 14 13 38 38 H 1.09002 * 109.97409 * 301.28894 * 19 11 9 39 39 H 1.09002 * 109.97623 * 62.52699 * 19 11 9 40 40 H 1.08006 * 119.92469 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8677 -2.0932 1.3028 6 9 1.3566 -2.7992 0.2706 7 6 2.3206 -2.7507 2.4298 8 6 2.8543 -2.0201 3.4932 9 6 3.3466 -2.7169 4.6989 10 8 3.1914 -2.2164 5.7960 11 7 3.9677 -3.9073 4.5829 12 6 4.3139 -4.5768 3.3146 13 6 5.4957 -5.5202 3.6710 14 6 5.1011 -5.9779 5.0868 15 6 4.3447 -7.2995 5.1702 16 6 5.7160 -7.9680 5.3816 17 8 6.3484 -8.3722 4.1655 18 6 6.2147 -6.6115 5.9139 19 6 4.4079 -4.7591 5.7017 20 6 2.9154 -0.6254 3.4137 21 9 3.4257 0.0897 4.4401 22 6 2.4528 0.0201 2.2818 23 1 -0.3933 0.4418 0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7702 0.0321 26 1 1.5615 2.4679 -1.2086 27 1 2.2663 -3.8278 2.4865 28 1 3.4647 -5.1522 2.9459 29 1 4.6264 -3.8428 2.5719 30 1 6.4421 -4.9794 3.6841 31 1 5.5403 -6.3657 2.9846 32 1 3.6843 -7.3723 6.0344 33 1 3.8578 -7.5848 4.2376 34 1 5.7070 -8.7554 6.1354 35 1 6.0398 -9.2234 3.8258 36 1 7.2163 -6.3492 5.5734 37 1 6.0861 -6.4875 6.9892 38 1 5.1076 -4.2118 6.3334 39 1 3.5464 -5.0768 6.2892 40 1 2.4993 1.0973 2.2187 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_12360598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:10 Heat of formation + Delta-G solvation = -130.907906 kcal Electronic energy + Delta-G solvation = -28303.364297 eV Core-core repulsion = 23915.216609 eV Total energy + Delta-G solvation = -4388.147688 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.19600 -50.15318 -42.04994 -40.86309 -39.78639 -37.66825 -37.66494 -35.38060 -33.46083 -31.47423 -31.26189 -29.49434 -27.60486 -26.88373 -24.95462 -24.38432 -23.33732 -22.77399 -21.19062 -19.95458 -19.18729 -18.85553 -18.51899 -18.12550 -17.94171 -17.45145 -17.29337 -16.96293 -16.62660 -16.49374 -16.13640 -15.97635 -15.77126 -15.66461 -15.40077 -15.28836 -15.07728 -14.27266 -14.22254 -14.04779 -13.93566 -13.86892 -13.63692 -13.31814 -13.17619 -13.02956 -12.75328 -12.45897 -12.35254 -12.17561 -11.84407 -11.56241 -11.36403 -11.15481 -10.63255 -10.61231 -10.54573 -9.98445 -9.81711 -5.04973 -0.80241 -0.36009 1.15667 1.26331 1.59592 1.61767 1.93142 2.04072 2.72936 2.78321 3.01104 3.14649 3.22464 3.27915 3.35943 3.47114 3.53745 3.57506 3.72405 3.75561 3.89605 4.09131 4.16807 4.27633 4.29029 4.31305 4.43632 4.45081 4.53032 4.63800 4.64902 4.67832 4.68942 4.76665 4.87461 4.94138 4.97870 5.04011 5.13156 5.25423 5.32187 5.34543 6.15959 6.66998 6.75548 6.92002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.779 3.221 4 C -0.098 4.098 5 C 0.105 3.895 6 F -0.128 7.128 7 C -0.085 4.085 8 C -0.142 4.142 9 C 0.569 3.431 10 O -0.564 6.564 11 N -0.608 5.608 12 C 0.090 3.910 13 C -0.100 4.100 14 C -0.086 4.086 15 C -0.150 4.150 16 C 0.084 3.916 17 O -0.566 6.566 18 C -0.124 4.124 19 C 0.119 3.881 20 C 0.136 3.864 21 F -0.127 7.127 22 C -0.114 4.114 23 H 0.399 0.601 24 H 0.115 0.885 25 H -0.278 1.278 26 H -0.290 1.290 27 H 0.172 0.828 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.397 0.603 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -3.613 -1.353 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.187 4.187 3 Si 0.682 3.318 4 C -0.100 4.100 5 C 0.085 3.915 6 F -0.106 7.106 7 C -0.104 4.104 8 C -0.146 4.146 9 C 0.358 3.642 10 O -0.444 6.444 11 N -0.340 5.340 12 C -0.032 4.032 13 C -0.138 4.138 14 C -0.086 4.086 15 C -0.187 4.187 16 C 0.024 3.976 17 O -0.375 6.375 18 C -0.161 4.161 19 C -0.003 4.003 20 C 0.115 3.885 21 F -0.105 7.105 22 C -0.132 4.132 23 H 0.250 0.750 24 H 0.133 0.867 25 H -0.204 1.204 26 H -0.217 1.217 27 H 0.189 0.811 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.793 -2.465 -1.646 3.068 hybrid contribution -0.167 -1.058 -0.059 1.073 sum 0.626 -3.523 -1.706 3.964 Atomic orbital electron populations 1.86553 1.16256 1.82150 1.50555 1.25299 0.86002 1.11574 0.95809 0.93769 0.78369 0.73921 0.85745 1.20579 0.99196 0.92457 0.97771 1.17351 0.99091 0.89215 0.85799 1.91565 1.84429 1.78288 1.56365 1.21395 0.96833 1.02318 0.89860 1.19698 1.06280 0.92562 0.96044 1.17831 0.78094 0.80227 0.88038 1.90849 1.58608 1.66146 1.28759 1.48516 1.56992 1.18338 1.10163 1.22927 0.98769 0.96074 0.85399 1.22496 0.96868 0.99176 0.95259 1.21941 0.97415 0.92902 0.96367 1.23545 0.97224 0.94121 1.03826 1.22714 0.92046 0.95800 0.87008 1.86426 1.66637 1.43890 1.40512 1.22972 0.98278 0.94466 1.00401 1.21934 0.98945 0.90512 0.88930 1.17721 0.96965 0.87923 0.85872 1.91590 1.84057 1.77547 1.57282 1.20986 0.99549 1.02069 0.90578 0.75038 0.86712 1.20379 1.21678 0.81071 0.88822 0.89500 0.90892 0.87677 0.88328 0.89748 0.90065 0.75229 0.91012 0.87510 0.91934 0.90919 0.79908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.94 12.88 -148.98 -1.92 -0.98 16 2 C -0.08 0.22 2.44 71.24 0.17 0.39 16 3 Si 0.78 -3.85 29.90 68.60 2.05 -1.80 16 4 C -0.10 0.21 5.27 -19.78 -0.10 0.10 16 5 C 0.11 -0.02 7.23 22.33 0.16 0.14 16 6 F -0.13 -0.32 16.73 44.97 0.75 0.43 16 7 C -0.09 0.09 8.15 22.57 0.18 0.28 16 8 C -0.14 -0.49 5.42 -20.06 -0.11 -0.60 16 9 C 0.57 4.66 7.39 86.74 0.64 5.30 16 10 O -0.56 -9.45 16.46 -3.95 -0.07 -9.52 16 11 N -0.61 -1.53 3.34 -815.73 -2.72 -4.26 16 12 C 0.09 -0.35 5.23 86.99 0.46 0.11 16 13 C -0.10 0.38 6.01 31.72 0.19 0.57 16 14 C -0.09 0.30 0.93 -52.18 -0.05 0.25 16 15 C -0.15 0.94 7.14 30.77 0.22 1.16 16 16 C 0.08 -0.45 5.27 31.26 0.16 -0.29 16 17 O -0.57 2.33 12.40 -148.98 -1.85 0.48 16 18 C -0.12 0.43 7.23 30.77 0.22 0.65 16 19 C 0.12 0.14 6.37 86.26 0.55 0.69 16 20 C 0.14 0.45 7.24 22.66 0.16 0.61 16 21 F -0.13 -1.05 16.14 44.97 0.73 -0.33 16 22 C -0.11 0.32 8.62 22.28 0.19 0.51 16 23 H 0.40 -4.15 8.70 -74.06 -0.64 -4.79 16 24 H 0.12 -0.16 7.89 -2.39 -0.02 -0.18 16 25 H -0.28 0.09 7.11 99.48 0.71 0.79 16 26 H -0.29 -0.72 7.11 99.48 0.71 -0.01 16 27 H 0.17 -0.87 5.73 -2.91 -0.02 -0.88 16 28 H 0.09 -0.70 6.90 -2.39 -0.02 -0.72 16 29 H 0.09 -0.41 7.26 -2.39 -0.02 -0.43 16 30 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.10 -0.51 7.19 -2.39 -0.02 -0.53 16 32 H 0.10 -0.69 8.01 -2.38 -0.02 -0.71 16 33 H 0.08 -0.60 8.12 -2.39 -0.02 -0.62 16 34 H 0.08 -0.60 8.14 -2.38 -0.02 -0.62 16 35 H 0.40 -4.62 9.12 -74.06 -0.68 -5.30 16 36 H 0.07 -0.07 8.12 -2.39 -0.02 -0.09 16 37 H 0.11 -0.56 8.14 -2.38 -0.02 -0.57 16 38 H 0.06 0.24 8.09 -2.39 -0.02 0.22 16 39 H 0.07 0.10 7.87 -2.39 -0.02 0.08 16 40 H 0.18 -1.59 5.10 -2.91 -0.01 -1.61 16 Total: 0.00 -22.09 334.55 -0.13 -22.22 By element: Atomic # 1 Polarization: -15.96 SS G_CDS: -0.16 Total: -16.12 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 3.06 Total: 9.86 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -2.72 Total: -4.26 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -3.83 Total: -10.02 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 1.48 Total: 0.10 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.05 Total: -1.80 kcal Total: -22.09 -0.13 -22.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_12360598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.686 kcal (2) G-P(sol) polarization free energy of solvation -22.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds