Wall clock time and date at job start Tue Mar 9 2021 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86309 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47337 * 119.99808 * 2 1 3 5 5 C 1.35086 * 126.07494 * 255.03009 * 4 2 1 6 6 N 1.35048 * 107.97620 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.92718 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46992 * 125.00149 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47125 * 125.59156 * 0.02832 * 10 8 7 12 12 C 1.54588 * 107.35618 * 180.89783 * 11 10 8 13 13 C 1.53740 * 102.74867 * 20.84370 * 12 11 10 14 14 C 1.52312 * 116.26344 * 197.34127 * 13 12 11 15 15 C 1.54064 * 86.61187 * 216.60723 * 14 13 12 16 16 O 1.42898 * 113.56779 * 269.70164 * 15 14 13 17 17 C 1.52310 * 116.25649 * 95.00257 * 13 12 11 18 18 C 1.47698 * 125.58703 * 179.71789 * 10 8 7 19 19 N 1.40064 * 108.13892 * 0.22640 * 6 5 4 20 20 C 1.31625 * 108.11126 * 359.61634 * 19 6 5 21 21 C 1.48418 * 126.03927 * 180.13127 * 20 19 6 22 22 C 1.39324 * 120.11950 * 145.01507 * 21 20 19 23 23 C 1.38022 * 119.88026 * 179.67836 * 22 21 20 24 24 C 1.38324 * 120.11789 * 0.61796 * 23 22 21 25 25 C 1.38319 * 120.24156 * 359.67233 * 24 23 22 26 26 C 1.38028 * 120.11555 * 0.02562 * 25 24 23 27 27 H 0.96701 * 114.00208 * 60.00228 * 1 2 3 28 28 H 1.09000 * 109.47737 * 239.99779 * 2 1 3 29 29 H 1.48500 * 109.99891 * 298.67894 * 3 2 1 30 30 H 1.48497 * 109.99608 * 59.99660 * 3 2 1 31 31 H 1.07997 * 126.01333 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.47391 * 5.00140 * 7 6 5 33 33 H 1.09001 * 109.46813 * 245.00196 * 7 6 5 34 34 H 1.09000 * 109.87121 * 300.34366 * 11 10 8 35 35 H 1.08999 * 109.86782 * 61.45582 * 11 10 8 36 36 H 1.08992 * 110.75439 * 139.16334 * 12 11 10 37 37 H 1.09003 * 110.75529 * 262.53049 * 12 11 10 38 38 H 1.08996 * 113.68885 * 331.03693 * 14 13 12 39 39 H 1.09003 * 113.68940 * 102.18293 * 14 13 12 40 40 H 1.08998 * 113.63599 * 138.95678 * 15 14 13 41 41 H 0.96704 * 113.99417 * 277.80085 * 16 15 14 42 42 H 1.09006 * 113.68892 * 257.83140 * 17 13 12 43 43 H 1.09003 * 113.69224 * 28.87132 * 17 13 12 44 44 H 1.08998 * 110.40036 * 276.27269 * 18 10 8 45 45 H 1.09001 * 110.40449 * 38.67670 * 18 10 8 46 46 H 1.08000 * 120.05865 * 359.97187 * 22 21 20 47 47 H 1.08001 * 119.94258 * 180.31145 * 23 22 21 48 48 H 1.08001 * 119.87687 * 179.70122 * 24 23 22 49 49 H 1.07993 * 119.94436 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.05368 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4624 -0.1248 2.3259 6 7 2.7876 -1.0989 3.2029 7 6 3.3927 -0.9008 4.5223 8 6 2.5387 -1.5649 5.5714 9 8 1.5248 -2.1468 5.2487 10 7 2.9024 -1.5130 6.8682 11 6 4.1023 -0.8441 7.3949 12 6 4.1187 -1.0641 8.9250 13 6 3.2096 -2.2914 9.1010 14 6 2.6768 -2.5394 10.5062 15 6 2.8417 -4.0413 10.2050 16 8 1.6788 -4.6396 9.6291 17 6 3.9079 -3.6434 9.1667 18 6 2.1582 -2.1127 7.9942 19 7 2.4513 -2.3318 2.6296 20 6 1.9300 -2.1027 1.4430 21 6 1.4339 -3.1304 0.4939 22 6 0.3282 -2.8634 -0.3105 23 6 -0.1249 -3.8202 -1.1961 24 6 0.5088 -5.0470 -1.2767 25 6 1.6033 -5.3196 -0.4760 26 6 2.0685 -4.3677 0.4086 27 1 -0.3934 0.4417 -0.7651 28 1 1.7924 -0.5138 -0.8899 29 1 1.5878 2.4586 -1.2243 30 1 1.5613 2.4679 1.2085 31 1 2.6023 0.9357 2.4742 32 1 3.4632 0.1663 4.7332 33 1 4.3902 -1.3401 4.5341 34 1 4.9958 -1.2803 6.9483 35 1 4.0587 0.2225 7.1745 36 1 5.1289 -1.2785 9.2735 37 1 3.7052 -0.1994 9.4441 38 1 3.3355 -2.1759 11.2948 39 1 1.6401 -2.2313 10.6421 40 1 3.2410 -4.6136 11.0423 41 1 1.0052 -4.8918 10.2756 42 1 3.8492 -4.2121 8.2386 43 1 4.9189 -3.5950 9.5713 44 1 1.3649 -1.4425 8.3253 45 1 1.7443 -3.0786 7.7047 46 1 -0.1706 -1.9077 -0.2447 47 1 -0.9789 -3.6124 -1.8238 48 1 0.1480 -5.7946 -1.9675 49 1 2.0948 -6.2789 -0.5431 50 1 2.9235 -4.5814 1.0330 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_12622748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:18 Heat of formation + Delta-G solvation = 38.613195 kcal Electronic energy + Delta-G solvation = -33607.596323 eV Core-core repulsion = 29183.564473 eV Total energy + Delta-G solvation = -4424.031851 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.54375 -41.82002 -40.26802 -39.74122 -37.90163 -37.65237 -35.42077 -34.83363 -32.47116 -31.98715 -31.60793 -31.24724 -29.75859 -28.11645 -26.89013 -25.92879 -24.86431 -23.83516 -23.48114 -22.62138 -21.62875 -21.12946 -20.37932 -19.84089 -18.65039 -18.47055 -18.40028 -17.86019 -17.57183 -17.26247 -16.68712 -16.31954 -16.19020 -15.91548 -15.87342 -15.67952 -15.54894 -15.14183 -15.03580 -14.70820 -14.54537 -14.38072 -14.14613 -14.06327 -13.85834 -13.69917 -13.66865 -13.60960 -13.33434 -13.05132 -12.81252 -12.80116 -12.49218 -12.40077 -12.17567 -11.87553 -11.81641 -11.52321 -11.49515 -11.38327 -11.20628 -10.72730 -10.60941 -10.32337 -9.88799 -9.79926 -9.78779 -9.32531 -4.85905 0.05122 0.45998 0.73175 1.25400 1.37061 1.38617 1.66168 1.67402 1.85692 2.00464 2.87162 3.06647 3.18499 3.32243 3.39189 3.44891 3.57034 3.61921 3.69584 3.79651 3.83731 3.92795 4.01012 4.01492 4.08077 4.12501 4.20360 4.27653 4.32414 4.37426 4.44613 4.50778 4.58329 4.60370 4.66814 4.74161 4.76171 4.79642 4.83695 4.84982 4.92552 4.98987 4.99587 5.08598 5.15675 5.21769 5.26607 5.29152 5.29615 5.55848 5.59756 5.62309 5.85846 6.04494 6.32714 6.55814 6.68816 6.82583 6.94373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.054 4.054 3 Si 0.783 3.217 4 C -0.225 4.225 5 C 0.073 3.927 6 N -0.361 5.361 7 C 0.120 3.880 8 C 0.504 3.496 9 O -0.575 6.575 10 N -0.616 5.616 11 C 0.086 3.914 12 C -0.112 4.112 13 C -0.087 4.087 14 C -0.143 4.143 15 C 0.068 3.932 16 O -0.578 6.578 17 C -0.121 4.121 18 C 0.132 3.868 19 N -0.297 5.297 20 C 0.109 3.891 21 C -0.038 4.038 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.110 4.110 27 H 0.392 0.608 28 H 0.077 0.923 29 H -0.285 1.285 30 H -0.281 1.281 31 H 0.216 0.784 32 H 0.176 0.824 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.046 0.954 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.152 0.848 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 6.372 4.186 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.162 4.162 3 Si 0.685 3.315 4 C -0.236 4.236 5 C -0.072 4.072 6 N -0.143 5.143 7 C -0.003 4.003 8 C 0.292 3.708 9 O -0.453 6.453 10 N -0.351 5.351 11 C -0.035 4.035 12 C -0.150 4.150 13 C -0.088 4.088 14 C -0.181 4.181 15 C 0.009 3.991 16 O -0.387 6.387 17 C -0.158 4.158 18 C 0.010 3.990 19 N -0.118 5.118 20 C -0.056 4.056 21 C -0.040 4.040 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.129 4.129 27 H 0.243 0.757 28 H 0.095 0.905 29 H -0.211 1.211 30 H -0.208 1.208 31 H 0.233 0.767 32 H 0.193 0.807 33 H 0.161 0.839 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.245 0.755 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.169 0.831 47 H 0.164 0.836 48 H 0.166 0.834 49 H 0.161 0.839 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.537 5.847 4.976 11.482 hybrid contribution -2.183 -0.250 -0.430 2.239 sum 6.354 5.597 4.546 9.610 Atomic orbital electron populations 1.86530 1.19287 1.79762 1.50968 1.24401 0.83371 1.12341 0.96109 0.94062 0.89743 0.70265 0.77410 1.19631 1.12679 0.91747 0.99569 1.22776 0.98836 0.96538 0.89016 1.48084 1.48501 1.03702 1.14020 1.21906 0.96632 1.05907 0.75861 1.20892 0.86091 0.80844 0.83020 1.90820 1.28410 1.45032 1.81027 1.48660 1.26765 1.54769 1.04867 1.22576 0.86585 0.98766 0.95613 1.22535 1.01389 0.97107 0.93930 1.21816 0.95890 0.96158 0.94915 1.23406 1.02644 0.96363 0.95679 1.23029 0.86802 0.93197 0.96097 1.86483 1.30784 1.81897 1.39519 1.22987 0.98857 0.94905 0.99024 1.21745 0.94364 0.97364 0.85562 1.77682 1.20926 1.04253 1.08944 1.20951 0.98579 0.93830 0.92278 1.18051 0.97280 0.92536 0.96146 1.22014 0.95073 1.01661 0.94677 1.21434 1.00729 0.93570 0.98898 1.21616 0.95295 0.97489 0.99013 1.21363 0.97567 0.99695 0.96164 1.21314 1.00079 0.92839 0.98669 0.75721 0.90525 1.21119 1.20785 0.76731 0.80699 0.83883 0.89134 0.88225 0.87213 0.88984 0.86130 0.91035 0.89680 0.75470 0.93491 0.85669 0.92013 0.93366 0.83111 0.83619 0.83439 0.83921 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.74 10.08 -148.98 -1.50 -4.24 16 2 C -0.05 -0.17 1.99 71.24 0.14 -0.03 16 3 Si 0.78 -2.07 30.78 68.60 2.11 0.04 16 4 C -0.23 -1.96 5.37 -19.95 -0.11 -2.07 16 5 C 0.07 0.32 9.96 83.47 0.83 1.15 16 6 N -0.36 -2.94 3.40 -351.90 -1.19 -4.14 16 7 C 0.12 -0.08 6.17 85.63 0.53 0.45 16 8 C 0.50 4.43 7.88 87.66 0.69 5.12 16 9 O -0.57 -12.85 15.99 -3.03 -0.05 -12.90 16 10 N -0.62 -1.62 3.34 -812.68 -2.71 -4.34 16 11 C 0.09 -0.69 6.50 86.80 0.56 -0.13 16 12 C -0.11 1.02 6.34 31.38 0.20 1.22 16 13 C -0.09 0.24 0.93 -52.18 -0.05 0.20 16 14 C -0.14 0.72 7.28 30.73 0.22 0.94 16 15 C 0.07 -0.11 5.27 31.28 0.16 0.05 16 16 O -0.58 -2.24 12.49 -148.98 -1.86 -4.10 16 17 C -0.12 0.19 7.23 30.72 0.22 0.41 16 18 C 0.13 0.71 5.97 86.39 0.52 1.23 16 19 N -0.30 -5.04 11.65 -48.16 -0.56 -5.60 16 20 C 0.11 1.64 6.74 42.53 0.29 1.93 16 21 C -0.04 -0.54 5.80 -20.04 -0.12 -0.66 16 22 C -0.12 -1.27 8.94 22.48 0.20 -1.07 16 23 C -0.13 -0.88 10.03 22.24 0.22 -0.65 16 24 C -0.12 -0.66 10.04 22.31 0.22 -0.44 16 25 C -0.13 -1.02 10.03 22.24 0.22 -0.79 16 26 C -0.11 -1.36 9.75 22.48 0.22 -1.14 16 27 H 0.39 -1.55 8.74 -74.06 -0.65 -2.20 16 28 H 0.08 0.13 7.84 -2.39 -0.02 0.11 16 29 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 30 H -0.28 -0.49 7.04 99.48 0.70 0.21 16 31 H 0.22 -1.06 6.36 -2.91 -0.02 -1.08 16 32 H 0.18 -1.97 8.07 -2.39 -0.02 -1.99 16 33 H 0.14 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 36 H 0.11 -1.42 7.99 -2.39 -0.02 -1.44 16 37 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 39 H 0.07 -0.23 8.12 -2.39 -0.02 -0.25 16 40 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.40 -1.66 9.12 -74.05 -0.68 -2.33 16 42 H 0.05 0.25 8.13 -2.38 -0.02 0.23 16 43 H 0.13 -0.89 8.05 -2.39 -0.02 -0.91 16 44 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 45 H 0.05 0.68 7.15 -2.39 -0.02 0.67 16 46 H 0.15 1.55 4.52 -2.91 -0.01 1.54 16 47 H 0.15 0.23 8.06 -2.91 -0.02 0.20 16 48 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 49 H 0.14 0.43 8.06 -2.91 -0.02 0.40 16 50 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 Total: 0.00 -39.27 407.41 -0.89 -40.16 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -0.31 Total: -10.60 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.19 Total: 5.71 kcal Atomic # 7 Polarization: -9.60 SS G_CDS: -4.47 Total: -14.07 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -3.41 Total: -21.24 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.11 Total: 0.04 kcal Total: -39.27 -0.89 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_12622748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.775 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds