Wall clock time and date at job start Tue Mar 9 2021 13:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47082 * 2 1 4 4 C 1.50700 * 109.47176 * 120.00281 * 2 1 3 5 5 C 1.34829 * 125.65481 * 65.29057 * 4 2 1 6 6 C 1.40795 * 107.05293 * 180.10047 * 5 4 2 7 7 C 1.36107 * 106.73105 * 359.63496 * 6 5 4 8 8 C 1.47572 * 125.94556 * 180.24693 * 7 6 5 9 9 C 1.39916 * 119.95584 * 359.97438 * 8 7 6 10 10 C 1.36427 * 120.28090 * 179.97438 * 9 8 7 11 11 C 1.39879 * 120.18308 * 0.04673 * 10 9 8 12 12 C 1.47290 * 120.04355 * 179.97438 * 11 10 9 13 13 O 1.21624 * 119.99631 * 217.00048 * 12 11 10 14 14 N 1.34780 * 120.00116 * 37.00059 * 12 11 10 15 15 C 1.47533 * 125.65865 * 4.98696 * 14 12 11 16 16 C 1.55357 * 104.88675 * 156.01606 * 15 14 12 17 17 C 1.53947 * 101.33340 * 36.02584 * 16 15 14 18 18 C 1.52504 * 115.78838 * 94.93663 * 17 16 15 19 19 C 1.54016 * 86.67619 * 93.33794 * 18 17 16 20 20 O 1.42894 * 113.57350 * 269.85382 * 19 18 17 21 21 C 1.52499 * 115.79856 * 196.44929 * 17 16 15 22 22 C 1.47340 * 125.65570 * 185.29582 * 14 12 11 23 23 C 1.40408 * 119.90845 * 359.97438 * 11 10 9 24 24 O 1.35675 * 120.13778 * 180.02562 * 23 11 10 25 25 C 1.38275 * 119.72415 * 359.70408 * 23 11 10 26 26 O 1.34235 * 125.65021 * 244.97945 * 4 2 1 27 27 H 0.96693 * 114.00343 * 299.99653 * 1 2 3 28 28 H 1.09001 * 109.47255 * 240.00148 * 2 1 3 29 29 H 1.48504 * 110.00376 * 300.00221 * 3 2 1 30 30 H 1.48503 * 109.99995 * 61.31778 * 3 2 1 31 31 H 1.08010 * 126.47473 * 359.97438 * 5 4 2 32 32 H 1.07994 * 126.63900 * 179.89808 * 6 5 4 33 33 H 1.08010 * 119.85972 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.90506 * 180.02562 * 10 9 8 35 35 H 1.08999 * 110.33351 * 274.98802 * 15 14 12 36 36 H 1.08997 * 110.33309 * 37.22422 * 15 14 12 37 37 H 1.08995 * 111.21572 * 277.95647 * 16 15 14 38 38 H 1.08992 * 110.96387 * 153.98488 * 16 15 14 39 39 H 1.09003 * 113.67607 * 207.77997 * 18 17 16 40 40 H 1.08992 * 113.68211 * 338.89323 * 18 17 16 41 41 H 1.09007 * 113.64273 * 139.09323 * 19 18 17 42 42 H 0.96703 * 113.99991 * 277.75946 * 20 19 18 43 43 H 1.08999 * 113.67610 * 21.11880 * 21 17 16 44 44 H 1.08999 * 113.67731 * 152.12710 * 21 17 16 45 45 H 1.09004 * 109.97220 * 301.28232 * 22 14 12 46 46 H 1.09000 * 109.97948 * 62.53023 * 22 14 12 47 47 H 0.96703 * 114.00061 * 89.99696 * 24 23 11 48 48 H 1.08005 * 120.09408 * 180.31637 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7616 -2.0192 1.5066 6 6 2.3814 -2.2632 2.7471 7 6 2.9087 -1.0787 3.1613 8 6 3.6587 -0.8547 4.4123 9 6 3.8800 -1.9181 5.2942 10 6 4.5730 -1.7186 6.4523 11 6 5.0665 -0.4480 6.7666 12 6 5.8138 -0.2360 8.0180 13 8 5.6769 0.8003 8.6398 14 7 6.6493 -1.1902 8.4740 15 6 6.9884 -2.4431 7.7728 16 6 8.3691 -2.8619 8.3490 17 6 8.2289 -2.4245 9.8183 18 6 7.7718 -3.5058 10.7917 19 6 9.2654 -3.7722 11.0573 20 8 9.8342 -4.7533 10.1879 21 6 9.5298 -2.3232 10.6076 22 6 7.3704 -1.1581 9.7585 23 6 4.8486 0.6248 5.8874 24 8 5.3257 1.8590 6.1873 25 6 4.1515 0.4168 4.7114 26 8 2.6271 -0.1464 2.2303 27 1 -0.3933 0.4416 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5878 2.4585 1.2242 31 1 1.2456 -2.7432 0.8933 32 1 2.4326 -3.2083 3.2671 33 1 3.5013 -2.9014 5.0568 34 1 4.7406 -2.5438 7.1285 35 1 6.2406 -3.2082 7.9811 36 1 7.0636 -2.2681 6.6996 37 1 9.1808 -2.3260 7.8570 38 1 8.5125 -3.9397 8.2736 39 1 7.2358 -3.1171 11.6576 40 1 7.2574 -4.3381 10.3115 41 1 9.4974 -3.9522 12.1070 42 1 9.6718 -5.6655 10.4645 43 1 10.4148 -2.2139 9.9807 44 1 9.4935 -1.5975 11.4201 45 1 8.0066 -0.2743 9.8063 46 1 6.6594 -1.1501 10.5846 47 1 6.2184 2.0269 5.8556 48 1 3.9849 1.2367 4.0284 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17058092_12807986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:27 Heat of formation + Delta-G solvation = -63.622790 kcal Electronic energy + Delta-G solvation = -33397.792582 eV Core-core repulsion = 28773.890122 eV Total energy + Delta-G solvation = -4623.902460 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.74476 -42.04661 -41.10136 -39.45751 -38.22667 -37.92811 -37.44304 -35.40034 -34.25083 -33.48269 -31.39774 -31.26502 -30.57744 -29.10729 -27.09883 -26.92961 -25.00697 -24.20222 -23.67367 -22.99988 -22.38751 -21.52880 -20.88672 -19.98406 -19.49976 -18.62074 -18.53448 -18.01995 -17.70901 -17.51047 -17.26924 -17.09111 -16.66659 -16.41429 -16.15613 -15.86452 -15.82751 -15.62383 -15.26503 -14.89851 -14.67258 -14.36217 -14.16949 -14.13813 -14.01564 -13.85897 -13.80523 -13.71189 -13.56351 -13.43717 -13.31318 -12.96631 -12.89769 -12.65898 -12.54881 -12.06398 -11.90390 -11.83099 -11.65965 -11.29486 -11.14335 -10.90732 -10.82214 -10.71654 -10.58388 -9.98491 -9.66854 -9.01492 -5.01765 -0.73342 0.10504 0.67807 1.09362 1.43557 1.44493 1.69826 1.83436 1.90835 1.93424 2.55723 2.92953 2.96236 3.12882 3.17979 3.27733 3.33739 3.43694 3.54960 3.58649 3.63358 3.81896 3.84096 3.90546 3.93189 4.09091 4.15382 4.21462 4.29416 4.31715 4.36678 4.44018 4.56468 4.59298 4.65900 4.66592 4.70890 4.71764 4.75742 4.81296 4.87695 4.90685 4.98993 5.02654 5.03556 5.10678 5.12508 5.16487 5.32850 5.37263 5.46666 5.94191 6.20912 6.44213 6.56092 6.61025 7.17749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.697 3.303 4 C -0.045 4.045 5 C -0.173 4.173 6 C -0.178 4.178 7 C 0.025 3.975 8 C 0.026 3.974 9 C -0.113 4.113 10 C -0.068 4.068 11 C -0.154 4.154 12 C 0.572 3.428 13 O -0.514 6.514 14 N -0.617 5.617 15 C 0.096 3.904 16 C -0.105 4.105 17 C -0.089 4.089 18 C -0.157 4.157 19 C 0.081 3.919 20 O -0.549 6.549 21 C -0.118 4.118 22 C 0.123 3.877 23 C 0.170 3.830 24 O -0.477 6.477 25 C -0.137 4.137 26 O -0.162 6.162 27 H 0.381 0.619 28 H 0.138 0.862 29 H -0.248 1.248 30 H -0.255 1.255 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.382 0.618 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -6.354 -0.539 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.144 4.144 3 Si 0.596 3.404 4 C -0.095 4.095 5 C -0.192 4.192 6 C -0.197 4.197 7 C -0.024 4.024 8 C 0.025 3.975 9 C -0.131 4.131 10 C -0.087 4.087 11 C -0.158 4.158 12 C 0.361 3.639 13 O -0.389 6.389 14 N -0.352 5.352 15 C -0.026 4.026 16 C -0.143 4.143 17 C -0.090 4.090 18 C -0.195 4.195 19 C 0.022 3.978 20 O -0.355 6.355 21 C -0.156 4.156 22 C 0.001 3.999 23 C 0.124 3.876 24 O -0.287 6.287 25 C -0.156 4.156 26 O -0.059 6.059 27 H 0.229 0.771 28 H 0.156 0.844 29 H -0.172 1.172 30 H -0.179 1.179 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.230 0.770 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.252 0.748 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.499 -4.252 -0.808 5.566 hybrid contribution -0.982 -1.020 0.678 1.570 sum 2.517 -5.272 -0.130 5.844 Atomic orbital electron populations 1.86662 1.16647 1.80152 1.49274 1.24352 0.84019 1.12174 0.93831 0.94502 0.91402 0.73348 0.81119 1.22928 1.00697 0.93775 0.92082 1.21581 1.03980 0.95649 0.97968 1.21900 1.02141 0.98390 0.97318 1.20327 1.03682 0.87486 0.90942 1.17736 0.95879 0.93745 0.90127 1.20714 1.00003 0.98723 0.93708 1.20980 0.95831 0.95560 0.96311 1.20372 1.04297 0.94248 0.96852 1.17694 0.78936 0.82489 0.84761 1.90880 1.64215 1.25543 1.58250 1.48471 1.45544 1.20320 1.20830 1.22649 0.96769 0.85744 0.97461 1.22527 0.95962 1.02912 0.92885 1.21935 0.96405 0.94885 0.95738 1.23568 0.97585 0.98903 0.99449 1.22731 0.92416 0.89655 0.93044 1.86462 1.78112 1.18367 1.52553 1.22904 0.97337 0.95056 1.00304 1.21797 0.94705 0.97928 0.85515 1.18230 0.94727 0.83759 0.90930 1.84861 1.36191 1.28009 1.79680 1.21549 1.00069 0.97090 0.96845 1.83949 1.57565 1.37918 1.26485 0.77064 0.84428 1.17196 1.17876 0.82689 0.82638 0.84353 0.84164 0.91079 0.90148 0.90150 0.88595 0.88919 0.90390 0.91169 0.77005 0.89867 0.88271 0.90813 0.91098 0.74765 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.32 12.88 -35.23 -0.45 -0.77 16 2 C -0.03 0.02 2.98 36.01 0.11 0.13 16 3 Si 0.70 -0.52 32.11 -169.99 -5.46 -5.98 16 4 C -0.04 -0.03 6.21 -35.52 -0.22 -0.25 16 5 C -0.17 -0.08 10.78 -39.82 -0.43 -0.51 16 6 C -0.18 -0.03 10.26 -39.38 -0.40 -0.43 16 7 C 0.03 0.03 7.02 -36.54 -0.26 -0.23 16 8 C 0.03 0.02 5.87 -104.95 -0.62 -0.60 16 9 C -0.11 0.11 9.48 -39.61 -0.38 -0.27 16 10 C -0.07 0.04 8.10 -39.62 -0.32 -0.28 16 11 C -0.15 -0.31 5.42 -104.79 -0.57 -0.88 16 12 C 0.57 2.18 7.33 -12.58 -0.09 2.09 16 13 O -0.51 -4.13 16.34 -12.01 -0.20 -4.32 16 14 N -0.62 -0.63 3.34 -171.95 -0.57 -1.20 16 15 C 0.10 -0.18 5.24 -2.23 -0.01 -0.20 16 16 C -0.11 0.20 6.01 -24.99 -0.15 0.05 16 17 C -0.09 0.15 0.93 -154.49 -0.14 0.00 16 18 C -0.16 0.41 7.14 -26.45 -0.19 0.22 16 19 C 0.08 -0.19 5.27 -25.70 -0.14 -0.32 16 20 O -0.55 0.96 12.40 -35.23 -0.44 0.52 16 21 C -0.12 0.21 7.23 -26.46 -0.19 0.02 16 22 C 0.12 0.05 6.37 -3.52 -0.02 0.02 16 23 C 0.17 0.39 6.68 -38.75 -0.26 0.14 16 24 O -0.48 -1.35 12.18 -35.99 -0.44 -1.79 16 25 C -0.14 -0.18 9.65 -39.06 -0.38 -0.56 16 26 O -0.16 -0.25 8.79 4.71 0.04 -0.21 16 27 H 0.38 -0.74 8.70 45.56 0.40 -0.34 16 28 H 0.14 -0.31 7.96 -51.93 -0.41 -0.72 16 29 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 30 H -0.25 -0.55 7.11 56.52 0.40 -0.14 16 31 H 0.16 -0.11 8.06 -52.48 -0.42 -0.54 16 32 H 0.16 -0.34 7.24 -52.49 -0.38 -0.72 16 33 H 0.14 -0.46 6.95 -52.48 -0.36 -0.83 16 34 H 0.14 -0.36 5.77 -52.49 -0.30 -0.66 16 35 H 0.07 -0.23 6.90 -51.93 -0.36 -0.58 16 36 H 0.08 -0.20 7.28 -51.93 -0.38 -0.58 16 37 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.10 -0.21 7.19 -51.93 -0.37 -0.58 16 39 H 0.09 -0.26 8.01 -51.93 -0.42 -0.68 16 40 H 0.08 -0.22 8.12 -51.93 -0.42 -0.64 16 41 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 42 H 0.38 -2.07 9.12 45.56 0.42 -1.65 16 43 H 0.08 -0.08 8.12 -51.93 -0.42 -0.50 16 44 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 45 H 0.07 0.09 8.09 -51.93 -0.42 -0.33 16 46 H 0.07 0.06 7.86 -51.93 -0.41 -0.35 16 47 H 0.39 -0.71 9.06 45.56 0.41 -0.30 16 48 H 0.14 0.09 7.90 -52.48 -0.41 -0.32 16 LS Contribution 396.97 15.07 5.98 5.98 Total: 0.00 -11.04 396.97 -10.92 -21.97 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: -4.74 Total: -12.34 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.66 Total: -1.85 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -0.57 Total: -1.20 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.48 Total: -6.58 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.46 Total: -5.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -11.04 -10.92 -21.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_12807986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.655 kcal (2) G-P(sol) polarization free energy of solvation -11.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds