Wall clock time and date at job start Tue Mar 9 2021 13:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38972 * 119.95495 * 2 1 4 4 O 1.35711 * 119.91336 * 359.97438 * 3 2 1 5 5 C 1.39023 * 120.17585 * 180.02562 * 3 2 1 6 6 C 1.50697 * 119.95593 * 179.97438 * 5 3 2 7 7 O 1.42907 * 109.47018 * 74.99655 * 6 5 3 8 8 Si 1.86296 * 109.47175 * 194.99777 * 6 5 3 9 9 C 1.37687 * 120.08451 * 359.73655 * 5 3 2 10 10 C 1.39746 * 119.91351 * 0.49418 * 9 5 3 11 11 C 1.47600 * 120.08887 * 179.78888 * 10 9 5 12 12 O 1.21586 * 120.00002 * 7.62816 * 11 10 9 13 13 N 1.34778 * 119.99789 * 187.63253 * 11 10 9 14 14 C 1.47129 * 125.59563 * 354.60456 * 13 11 10 15 15 C 1.54580 * 107.35911 * 179.11307 * 14 13 11 16 16 C 1.53747 * 102.75216 * 339.15703 * 15 14 13 17 17 C 1.52314 * 116.26423 * 162.65282 * 16 15 14 18 18 C 1.54056 * 86.60879 * 94.19626 * 17 16 15 19 19 O 1.42900 * 113.56492 * 138.94702 * 18 17 16 20 20 C 1.52470 * 116.18966 * 264.98578 * 16 15 14 21 21 C 1.47712 * 125.58928 * 174.66735 * 13 11 10 22 22 C 1.37721 * 119.95431 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47478 * 270.02104 * 1 2 3 24 24 H 1.08998 * 109.47589 * 30.02318 * 1 2 3 25 25 H 1.08999 * 109.47645 * 150.02517 * 1 2 3 26 26 H 0.96695 * 113.99925 * 90.00618 * 4 3 2 27 27 H 1.09000 * 109.47042 * 314.99761 * 6 5 3 28 28 H 0.96705 * 113.99711 * 59.99812 * 7 6 5 29 29 H 1.48496 * 110.00070 * 180.02562 * 8 6 5 30 30 H 1.48510 * 109.99834 * 301.31911 * 8 6 5 31 31 H 1.07996 * 120.03781 * 180.25118 * 9 5 3 32 32 H 1.09000 * 109.86383 * 59.67558 * 14 13 11 33 33 H 1.08992 * 109.98304 * 298.62863 * 14 13 11 34 34 H 1.09003 * 110.75851 * 220.84077 * 15 14 13 35 35 H 1.08999 * 110.91281 * 97.54796 * 15 14 13 36 36 H 1.09004 * 113.69066 * 339.77247 * 17 16 15 37 37 H 1.08993 * 113.78156 * 208.63768 * 17 16 15 38 38 H 1.08995 * 113.56853 * 269.62326 * 18 17 16 39 39 H 0.96700 * 113.99656 * 181.37926 * 19 18 17 40 40 H 1.09000 * 113.69031 * 151.33174 * 20 16 15 41 41 H 1.08999 * 113.73718 * 20.14803 * 20 16 15 42 42 H 1.08992 * 110.40253 * 83.71341 * 21 13 11 43 43 H 1.09007 * 110.39385 * 321.30430 * 21 13 11 44 44 H 1.08003 * 120.04435 * 359.97409 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3778 -0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5180 -0.0011 7 8 4.2724 3.1049 1.3002 8 14 6.1196 2.2156 -0.4563 9 6 4.2859 0.0207 0.0044 10 6 3.5918 -1.1922 -0.0005 11 6 4.3328 -2.4687 0.0001 12 8 5.5400 -2.4709 0.1445 13 7 3.6711 -3.6320 -0.1596 14 6 2.2093 -3.7828 -0.2317 15 6 1.9104 -5.2850 -0.4402 16 6 3.2377 -5.8204 -1.0018 17 6 3.4349 -7.3295 -0.9421 18 6 2.8819 -7.3667 -2.3795 19 8 3.5814 -8.2703 -3.2376 20 6 3.3411 -5.9030 -2.5207 21 6 4.2945 -4.9648 -0.2897 22 6 2.1946 -1.1933 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.3220 2.7182 0.8827 27 1 3.8875 3.1937 -0.7278 28 1 4.6564 2.5572 1.9986 29 1 6.8677 3.4984 -0.4598 30 1 6.7370 1.2707 0.5088 31 1 5.3658 0.0258 0.0081 32 1 1.8185 -3.2074 -1.0709 33 1 1.7532 -3.4397 0.6969 34 1 1.1032 -5.4221 -1.1598 35 1 1.6683 -5.7686 0.5062 36 1 2.7944 -7.8265 -0.2135 37 1 4.4788 -7.6337 -0.8665 38 1 1.8001 -7.4906 -2.4272 39 1 3.2529 -8.2830 -4.1469 40 1 4.3587 -5.7975 -2.8968 41 1 2.6262 -5.2683 -3.0444 42 1 4.5176 -5.3775 0.6940 43 1 5.2014 -4.9028 -0.8913 44 1 1.6546 -2.1286 0.0014 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_13287732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:54 Heat of formation + Delta-G solvation = -76.738691 kcal Electronic energy + Delta-G solvation = -27692.631785 eV Core-core repulsion = 23771.521190 eV Total energy + Delta-G solvation = -3921.110595 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20356 -41.27580 -40.06913 -38.02746 -37.75668 -37.54726 -35.57376 -34.02132 -32.19499 -31.24391 -29.23520 -27.99207 -26.92676 -26.82482 -25.49071 -23.52445 -22.90597 -22.04963 -20.82633 -19.62152 -19.56582 -18.54032 -18.36746 -18.11273 -17.37495 -16.98229 -16.71221 -16.57898 -16.12011 -15.89614 -15.77708 -15.62585 -15.09498 -14.82960 -14.73962 -14.54084 -14.25908 -14.15520 -13.96273 -13.58848 -13.40108 -13.33382 -13.12091 -12.89615 -12.78154 -12.76309 -12.49765 -12.23106 -11.95849 -11.91410 -11.60626 -11.43251 -11.21796 -11.12577 -10.69565 -10.65440 -9.99720 -9.92212 -9.59877 -5.05508 -0.41783 0.05320 1.17225 1.47549 1.53524 1.74963 1.79894 2.49044 3.06557 3.15247 3.28727 3.30305 3.37869 3.47603 3.50981 3.61689 3.68483 3.85394 3.88634 4.05180 4.11782 4.17196 4.22409 4.34044 4.41675 4.43487 4.46890 4.62766 4.65968 4.68133 4.73666 4.78515 4.79862 4.83951 4.92234 4.98699 5.03716 5.04590 5.07445 5.19372 5.23034 5.25385 5.33589 5.38490 5.60496 6.29313 6.35934 6.70121 6.91567 6.92377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C 0.156 3.844 4 O -0.495 6.495 5 C -0.152 4.152 6 C -0.059 4.059 7 O -0.538 6.538 8 Si 0.740 3.260 9 C -0.068 4.068 10 C -0.149 4.149 11 C 0.567 3.433 12 O -0.586 6.586 13 N -0.609 5.609 14 C 0.078 3.922 15 C -0.105 4.105 16 C -0.086 4.086 17 C -0.116 4.116 18 C 0.080 3.920 19 O -0.586 6.586 20 C -0.153 4.153 21 C 0.119 3.881 22 C -0.092 4.092 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.411 0.589 27 H 0.128 0.872 28 H 0.385 0.615 29 H -0.288 1.288 30 H -0.293 1.293 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.395 0.605 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 -3.415 -1.398 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.118 4.118 3 C 0.111 3.889 4 O -0.309 6.309 5 C -0.153 4.153 6 C -0.169 4.169 7 O -0.346 6.346 8 Si 0.647 3.353 9 C -0.087 4.087 10 C -0.152 4.152 11 C 0.358 3.642 12 O -0.468 6.468 13 N -0.341 5.341 14 C -0.043 4.043 15 C -0.142 4.142 16 C -0.087 4.087 17 C -0.154 4.154 18 C 0.022 3.978 19 O -0.394 6.394 20 C -0.190 4.190 21 C -0.003 4.003 22 C -0.109 4.109 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.272 0.728 27 H 0.146 0.854 28 H 0.234 0.766 29 H -0.215 1.215 30 H -0.220 1.220 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.245 0.755 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.473 -2.975 -1.454 9.097 hybrid contribution 0.428 0.343 1.247 1.362 sum -8.045 -2.631 -0.207 8.467 Atomic orbital electron populations 1.20784 0.87872 1.04449 1.03714 1.20539 0.98541 0.91500 1.01229 1.18494 0.88592 0.86075 0.95786 1.84623 1.75391 1.35640 1.35219 1.20472 0.94304 0.95159 1.05361 1.24801 1.09792 0.93963 0.88364 1.86574 1.82889 1.48328 1.16822 0.93985 0.73608 0.77529 0.90208 1.21084 1.00211 0.91081 0.96319 1.19695 0.94704 0.91962 1.08841 1.18196 0.86196 0.83645 0.76128 1.90786 1.16087 1.87575 1.52358 1.48423 1.08955 1.05830 1.70853 1.22966 0.79006 0.98884 1.03419 1.22511 0.95661 0.92390 1.03623 1.21745 0.96124 0.94863 0.95997 1.22850 1.02574 0.93595 0.96344 1.23558 0.96490 0.87317 0.90476 1.86497 1.62301 1.64697 1.25922 1.23501 1.02407 0.98347 0.94780 1.22051 0.96416 0.81345 1.00503 1.22838 0.92158 1.01069 0.94829 0.89720 0.91003 0.89168 0.72816 0.85381 0.76587 1.21493 1.22031 0.85489 0.88378 0.88164 0.86781 0.88247 0.88651 0.90517 0.87483 0.75536 0.91052 0.89412 0.91020 0.92345 0.79138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.85 9.78 71.24 0.70 1.55 16 2 C -0.12 0.29 5.89 -19.81 -0.12 0.18 16 3 C 0.16 0.10 6.66 22.63 0.15 0.25 16 4 O -0.50 0.39 11.84 -90.32 -1.07 -0.68 16 5 C -0.15 -0.41 5.27 -19.81 -0.10 -0.51 16 6 C -0.06 -0.13 2.37 71.24 0.17 0.04 16 7 O -0.54 -1.56 12.88 -148.98 -1.92 -3.47 16 8 Si 0.74 2.71 30.25 68.60 2.08 4.79 16 9 C -0.07 -0.38 8.19 22.50 0.18 -0.20 16 10 C -0.15 -0.64 5.87 -20.08 -0.12 -0.76 16 11 C 0.57 4.80 7.80 86.71 0.68 5.47 16 12 O -0.59 -10.36 16.69 -3.99 -0.07 -10.42 16 13 N -0.61 -0.85 3.34 -830.62 -2.77 -3.62 16 14 C 0.08 -0.64 4.89 86.80 0.42 -0.22 16 15 C -0.10 1.15 6.19 31.38 0.19 1.34 16 16 C -0.09 0.45 0.93 -52.20 -0.05 0.40 16 17 C -0.12 0.46 7.29 30.72 0.22 0.68 16 18 C 0.08 -0.39 5.11 31.28 0.16 -0.23 16 19 O -0.59 0.23 13.67 -148.98 -2.04 -1.81 16 20 C -0.15 0.65 7.22 30.77 0.22 0.87 16 21 C 0.12 0.16 6.29 86.31 0.54 0.70 16 22 C -0.09 0.23 8.23 22.51 0.19 0.42 16 23 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 24 H 0.07 -0.40 7.52 -2.39 -0.02 -0.42 16 25 H 0.09 -1.01 8.08 -2.39 -0.02 -1.03 16 26 H 0.41 -2.99 9.06 -74.06 -0.67 -3.66 16 27 H 0.13 0.18 7.82 -2.39 -0.02 0.17 16 28 H 0.39 -0.73 8.70 -74.05 -0.64 -1.38 16 29 H -0.29 -2.69 7.11 99.48 0.71 -1.98 16 30 H -0.29 -2.88 6.68 99.48 0.66 -2.21 16 31 H 0.13 1.07 4.46 -2.91 -0.01 1.05 16 32 H 0.10 -1.07 6.66 -2.39 -0.02 -1.08 16 33 H 0.10 -1.14 6.79 -2.39 -0.02 -1.16 16 34 H 0.11 -1.73 8.06 -2.39 -0.02 -1.75 16 35 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.09 -0.65 8.12 -2.39 -0.02 -0.67 16 37 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.11 -1.04 8.14 -2.39 -0.02 -1.05 16 39 H 0.39 -3.31 9.12 -74.06 -0.68 -3.98 16 40 H 0.07 0.04 8.07 -2.39 -0.02 0.02 16 41 H 0.09 -0.61 8.12 -2.39 -0.02 -0.63 16 42 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.06 0.36 7.99 -2.38 -0.02 0.34 16 44 H 0.19 -1.70 2.75 -8.25 -0.02 -1.72 16 Total: 0.00 -25.10 352.46 -3.28 -28.38 By element: Atomic # 1 Polarization: -22.21 SS G_CDS: -0.94 Total: -23.14 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 3.44 Total: 9.98 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -2.77 Total: -3.62 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -5.09 Total: -16.38 kcal Atomic # 14 Polarization: 2.71 SS G_CDS: 2.08 Total: 4.79 kcal Total: -25.10 -3.28 -28.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_13287732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.358 kcal (2) G-P(sol) polarization free energy of solvation -25.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds