Wall clock time and date at job start Tue Mar 9 2021 13:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.47259 * 2 1 4 4 C 1.50700 * 109.47371 * 119.99919 * 2 1 3 5 5 C 1.38505 * 119.80832 * 245.00411 * 4 2 1 6 6 C 1.37825 * 120.30279 * 179.97438 * 5 4 2 7 7 C 1.39671 * 119.90782 * 359.97438 * 6 5 4 8 8 C 1.47535 * 120.19100 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00211 * 143.37201 * 8 7 6 10 10 N 1.34777 * 119.99743 * 323.37258 * 8 7 6 11 11 C 1.47523 * 125.66217 * 354.73257 * 10 8 7 12 12 C 1.55144 * 104.99906 * 203.90585 * 11 10 8 13 13 C 1.53945 * 101.42237 * 324.25495 * 12 11 10 14 14 C 1.52502 * 115.78696 * 264.92181 * 13 12 11 15 15 C 1.54009 * 86.68025 * 217.22525 * 14 13 12 16 16 O 1.42900 * 113.57562 * 139.07816 * 15 14 13 17 17 C 1.52659 * 115.85900 * 163.34004 * 13 12 11 18 18 C 1.47348 * 125.65445 * 174.70780 * 10 8 7 19 19 C 1.40167 * 119.61528 * 0.24735 * 7 6 5 20 20 O 1.35654 * 120.15067 * 179.75603 * 19 7 6 21 21 C 1.38101 * 119.80406 * 64.97820 * 4 2 1 22 22 H 0.96700 * 113.99911 * 299.99953 * 1 2 3 23 23 H 1.08999 * 109.47258 * 240.00196 * 2 1 3 24 24 H 1.48497 * 110.00409 * 178.68185 * 3 2 1 25 25 H 1.48502 * 109.99891 * 300.00327 * 3 2 1 26 26 H 1.08009 * 119.84588 * 359.97156 * 5 4 2 27 27 H 1.08006 * 120.04389 * 179.97438 * 6 5 4 28 28 H 1.09003 * 110.33908 * 322.79089 * 11 10 8 29 29 H 1.09005 * 110.33651 * 85.02643 * 11 10 8 30 30 H 1.08993 * 111.03042 * 206.21806 * 12 11 10 31 31 H 1.08995 * 111.02919 * 82.28970 * 12 11 10 32 32 H 1.09001 * 113.67808 * 102.78007 * 14 13 12 33 33 H 1.08998 * 113.76505 * 331.68255 * 14 13 12 34 34 H 1.08997 * 113.57566 * 269.77703 * 15 14 13 35 35 H 0.96703 * 114.00130 * 181.40421 * 16 15 14 36 36 H 1.09001 * 113.67375 * 28.28755 * 17 13 12 37 37 H 1.09000 * 113.72586 * 257.13873 * 17 13 12 38 38 H 1.09003 * 109.97468 * 58.71283 * 18 10 8 39 39 H 1.08992 * 110.01126 * 297.44098 * 18 10 8 40 40 H 0.96693 * 114.00314 * 89.99721 * 20 19 7 41 41 H 1.07998 * 119.95748 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6397 -0.0070 2.1906 6 6 3.1035 -0.6463 3.3201 7 6 2.8583 -2.0097 3.4988 8 6 3.3523 -2.7005 4.7052 9 8 2.6830 -3.5738 5.2227 10 7 4.5454 -2.3635 5.2336 11 6 5.5047 -1.4062 4.6508 12 6 6.8834 -1.8139 5.2338 13 6 6.4937 -2.2597 6.6549 14 6 6.6288 -1.1998 7.7431 15 6 7.1004 -2.3377 8.6677 16 8 8.1924 -1.9714 9.5135 17 6 7.5318 -3.0961 7.3985 18 6 5.1080 -2.8898 6.4897 19 6 2.1451 -2.7190 2.5226 20 8 1.9051 -4.0445 2.6827 21 6 1.6824 -2.0588 1.3943 22 1 -0.3933 0.4417 0.7651 23 1 1.7924 -0.5138 -0.8900 24 1 3.5346 1.7704 0.0321 25 1 1.5615 2.4679 -1.2085 26 1 2.8295 1.0474 2.0535 27 1 3.6557 -0.0939 4.0659 28 1 5.5126 -1.4918 3.5642 29 1 5.2531 -0.3885 4.9495 30 1 7.5629 -0.9622 5.2635 31 1 7.3177 -2.6395 4.6701 32 1 5.6791 -0.7570 8.0432 33 1 7.3980 -0.4552 7.5379 34 1 6.2893 -2.8226 9.2107 35 1 8.5075 -2.6878 10.0815 36 1 8.5583 -2.8917 7.0940 37 1 7.3001 -4.1609 7.4247 38 1 5.1967 -3.9747 6.4322 39 1 4.4703 -2.6125 7.3290 40 1 1.0794 -4.2416 3.1455 41 1 1.1294 -2.6005 0.6413 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_13422076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:08 Heat of formation + Delta-G solvation = -92.576961 kcal Electronic energy + Delta-G solvation = -25449.135367 eV Core-core repulsion = 21682.875592 eV Total energy + Delta-G solvation = -3766.259775 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09425 -41.17212 -39.73045 -38.52558 -37.64452 -37.12194 -35.47515 -32.96088 -31.35670 -31.12307 -29.11674 -27.28706 -26.86466 -25.00386 -23.90948 -23.01792 -22.56691 -21.10075 -19.68529 -19.18637 -18.65221 -18.20853 -18.10158 -17.48787 -17.20236 -16.76042 -16.46965 -16.14991 -15.85334 -15.61930 -15.44440 -15.05755 -14.87508 -14.74192 -14.51737 -14.19014 -13.97868 -13.77431 -13.39469 -13.28725 -13.09672 -12.94119 -12.87375 -12.36464 -12.32647 -12.17840 -12.03819 -11.71531 -11.50477 -11.22737 -11.12078 -10.69808 -10.48383 -10.11155 -9.90338 -9.74176 -4.97318 -0.39068 0.11224 1.29109 1.53111 1.67052 1.77569 2.00607 2.44219 3.06805 3.08319 3.25666 3.37543 3.45444 3.52787 3.57261 3.62389 3.77556 3.80251 3.84261 4.04145 4.16113 4.22053 4.26444 4.32825 4.36863 4.52640 4.58180 4.65578 4.72785 4.76488 4.77853 4.80781 4.90532 4.95400 5.01815 5.03200 5.06649 5.16595 5.21968 5.29456 5.31553 5.57353 6.29870 6.60678 6.74526 6.87748 6.92725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.084 4.084 3 Si 0.786 3.214 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.058 4.058 7 C -0.171 4.171 8 C 0.574 3.426 9 O -0.574 6.574 10 N -0.613 5.613 11 C 0.090 3.910 12 C -0.114 4.114 13 C -0.087 4.087 14 C -0.110 4.110 15 C 0.071 3.929 16 O -0.579 6.579 17 C -0.148 4.148 18 C 0.130 3.870 19 C 0.146 3.854 20 O -0.507 6.507 21 C -0.135 4.135 22 H 0.397 0.603 23 H 0.108 0.892 24 H -0.274 1.274 25 H -0.303 1.303 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.394 0.606 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 5.907 1.874 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.193 4.193 3 Si 0.691 3.309 4 C -0.076 4.076 5 C -0.141 4.141 6 C -0.076 4.076 7 C -0.175 4.175 8 C 0.364 3.636 9 O -0.454 6.454 10 N -0.345 5.345 11 C -0.031 4.031 12 C -0.151 4.151 13 C -0.088 4.088 14 C -0.147 4.147 15 C 0.012 3.988 16 O -0.387 6.387 17 C -0.186 4.186 18 C 0.007 3.993 19 C 0.100 3.900 20 O -0.321 6.321 21 C -0.154 4.154 22 H 0.247 0.753 23 H 0.126 0.874 24 H -0.200 1.200 25 H -0.231 1.231 26 H 0.184 0.816 27 H 0.182 0.818 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.270 0.730 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.111 6.180 0.586 6.944 hybrid contribution -0.539 -1.859 0.236 1.950 sum 2.573 4.321 0.822 5.096 Atomic orbital electron populations 1.86503 1.16992 1.82237 1.50554 1.25419 0.85534 1.11675 0.96660 0.93681 0.78154 0.74016 0.85034 1.20566 0.96672 0.93538 0.96787 1.21228 0.98575 1.00991 0.93303 1.21582 0.96719 0.91457 0.97861 1.20300 1.05988 0.95905 0.95268 1.18057 0.80205 0.81793 0.83511 1.90760 1.58008 1.33061 1.63605 1.48507 1.17356 1.44338 1.24349 1.22854 0.87728 0.93285 0.99217 1.22668 0.96068 1.02934 0.93480 1.21615 0.93572 0.97879 0.95689 1.22961 1.02274 0.96241 0.93205 1.23562 0.89251 0.96828 0.89140 1.86478 1.51564 1.43125 1.57572 1.23533 0.99448 0.99448 0.96152 1.21609 0.93367 0.98263 0.86015 1.18663 0.95245 0.83228 0.92851 1.84641 1.47492 1.19485 1.80464 1.21313 1.01286 0.94724 0.98063 0.75266 0.87435 1.20042 1.23116 0.81619 0.81838 0.89759 0.88209 0.87207 0.90508 0.90223 0.88211 0.89581 0.75613 0.88334 0.90749 0.92149 0.91163 0.72996 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.90 12.83 -148.98 -1.91 -1.01 16 2 C -0.08 0.25 2.79 71.24 0.20 0.45 16 3 Si 0.79 -4.65 29.78 68.60 2.04 -2.61 16 4 C -0.07 0.16 5.36 -19.83 -0.11 0.05 16 5 C -0.12 0.71 8.64 22.24 0.19 0.90 16 6 C -0.06 0.21 8.18 22.52 0.18 0.40 16 7 C -0.17 -0.65 5.42 -20.01 -0.11 -0.76 16 8 C 0.57 4.68 7.34 86.70 0.64 5.32 16 9 O -0.57 -9.19 16.35 12.39 0.20 -8.99 16 10 N -0.61 -1.30 3.34 -816.34 -2.72 -4.03 16 11 C 0.09 -0.47 5.23 86.92 0.45 -0.02 16 12 C -0.11 0.70 6.44 31.65 0.20 0.91 16 13 C -0.09 0.35 0.92 -52.12 -0.05 0.30 16 14 C -0.11 0.44 7.15 30.77 0.22 0.66 16 15 C 0.07 -0.21 5.10 31.26 0.16 -0.05 16 16 O -0.58 0.29 13.67 -148.98 -2.04 -1.75 16 17 C -0.15 0.58 7.26 30.83 0.22 0.80 16 18 C 0.13 0.12 6.24 86.26 0.54 0.66 16 19 C 0.15 0.83 6.68 22.84 0.15 0.98 16 20 O -0.51 -4.28 12.19 -73.31 -0.89 -5.17 16 21 C -0.14 -0.32 9.60 22.34 0.21 -0.11 16 22 H 0.40 -3.99 8.70 -74.06 -0.64 -4.63 16 23 H 0.11 -0.14 7.96 -2.39 -0.02 -0.16 16 24 H -0.27 0.69 7.11 99.48 0.71 1.39 16 25 H -0.30 -0.81 7.11 99.48 0.71 -0.10 16 26 H 0.17 -1.99 4.88 -2.91 -0.01 -2.01 16 27 H 0.16 -1.49 5.77 -2.91 -0.02 -1.50 16 28 H 0.08 -0.45 7.29 -2.39 -0.02 -0.47 16 29 H 0.10 -1.00 6.90 -2.38 -0.02 -1.01 16 30 H 0.11 -1.04 7.98 -2.39 -0.02 -1.06 16 31 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.08 -0.34 8.03 -2.39 -0.02 -0.36 16 33 H 0.10 -0.41 8.03 -2.39 -0.02 -0.43 16 34 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.39 -3.11 9.12 -74.05 -0.68 -3.79 16 36 H 0.10 -0.38 8.14 -2.39 -0.02 -0.39 16 37 H 0.07 -0.27 8.01 -2.39 -0.02 -0.29 16 38 H 0.06 0.24 7.99 -2.39 -0.02 0.23 16 39 H 0.07 0.11 7.89 -2.39 -0.02 0.09 16 40 H 0.41 1.04 9.06 -74.06 -0.67 0.37 16 41 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 Total: 0.00 -24.52 334.82 -3.06 -27.58 By element: Atomic # 1 Polarization: -13.67 SS G_CDS: -0.86 Total: -14.53 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 3.12 Total: 10.50 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -2.72 Total: -4.03 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -4.64 Total: -16.92 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 2.04 Total: -2.61 kcal Total: -24.52 -3.06 -27.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_13422076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.000 kcal (2) G-P(sol) polarization free energy of solvation -24.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds