Wall clock time and date at job start Tue Mar 9 2021 13:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47510 * 2 1 4 4 C 1.50705 * 109.47235 * 120.00150 * 2 1 3 5 5 C 1.38709 * 120.02708 * 74.97477 * 4 2 1 6 6 O 1.35895 * 120.05826 * 0.02562 * 5 4 2 7 7 C 1.42904 * 117.00128 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00089 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.47131 * 125.59438 * 0.02562 * 10 8 7 12 12 C 1.54584 * 107.35873 * 180.93905 * 11 10 8 13 13 C 1.53753 * 102.74900 * 20.84573 * 12 11 10 14 14 C 1.52310 * 116.26159 * 197.34601 * 13 12 11 15 15 C 1.54061 * 86.61103 * 216.60405 * 14 13 12 16 16 O 1.42898 * 113.56621 * 269.70048 * 15 14 13 17 17 C 1.52307 * 116.25728 * 95.00467 * 13 12 11 18 18 C 1.47707 * 125.58826 * 179.71710 * 10 8 7 19 19 C 1.38759 * 119.88803 * 180.02562 * 5 4 2 20 20 C 1.38126 * 119.94113 * 359.97438 * 19 5 4 21 21 C 1.38290 * 120.05768 * 359.97438 * 20 19 5 22 22 C 1.38164 * 120.02603 * 255.00183 * 4 2 1 23 23 H 0.96696 * 114.00208 * 300.00257 * 1 2 3 24 24 H 1.08999 * 109.47649 * 239.99596 * 2 1 3 25 25 H 1.48501 * 110.00218 * 178.67850 * 3 2 1 26 26 H 1.48495 * 109.99643 * 300.00260 * 3 2 1 27 27 H 1.09000 * 109.46735 * 300.00020 * 7 6 5 28 28 H 1.09002 * 109.46782 * 59.99820 * 7 6 5 29 29 H 1.08995 * 109.86581 * 300.38520 * 11 10 8 30 30 H 1.08996 * 109.86502 * 61.49447 * 11 10 8 31 31 H 1.08997 * 110.75463 * 139.16234 * 12 11 10 32 32 H 1.09001 * 110.75809 * 262.34829 * 12 11 10 33 33 H 1.09000 * 113.69000 * 331.03265 * 14 13 12 34 34 H 1.08998 * 113.69072 * 102.18062 * 14 13 12 35 35 H 1.08996 * 113.63549 * 138.95464 * 15 14 13 36 36 H 0.96698 * 113.99938 * 277.79714 * 16 15 14 37 37 H 1.09004 * 113.68795 * 257.82743 * 17 13 12 38 38 H 1.09002 * 113.69217 * 28.87144 * 17 13 12 39 39 H 1.08997 * 110.39816 * 276.23534 * 18 10 8 40 40 H 1.09004 * 110.39556 * 38.64072 * 18 10 8 41 41 H 1.07998 * 120.02758 * 179.97438 * 19 5 4 42 42 H 1.07995 * 119.97120 * 179.97438 * 20 19 5 43 43 H 1.07995 * 119.94278 * 180.27458 * 21 20 19 44 44 H 1.08005 * 119.97654 * 359.95318 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8692 -2.0940 1.3071 6 8 1.3558 -2.8107 0.2729 7 6 1.3227 -4.2316 0.4214 8 6 0.7249 -4.8521 -0.8150 9 8 0.3624 -4.1469 -1.7328 10 7 0.5921 -6.1905 -0.9004 11 6 0.9871 -7.1581 0.1353 12 6 0.6707 -8.5702 -0.4081 13 6 0.6061 -8.3426 -1.9273 14 6 -0.0821 -9.4294 -2.7429 15 6 0.9784 -9.1594 -3.8274 16 8 0.5867 -8.1632 -4.7740 17 6 1.8857 -8.6200 -2.7053 18 6 0.0201 -6.9262 -2.0464 19 6 2.3321 -2.7452 2.4416 20 6 2.8539 -2.0145 3.4913 21 6 2.9157 -0.6353 3.4119 22 6 2.4536 0.0159 2.2834 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 3.5347 1.7702 0.0322 26 1 1.5615 2.4678 -1.2084 27 1 2.3367 -4.6059 0.5623 28 1 0.7154 -4.4922 1.2883 29 1 2.0546 -7.0694 0.3371 30 1 0.4194 -6.9764 1.0477 31 1 1.4684 -9.2689 -0.1558 32 1 -0.2867 -8.9253 -0.0268 33 1 -0.0109 -10.4220 -2.2982 34 1 -1.0962 -9.1718 -3.0484 35 1 1.3606 -10.0643 -4.2997 36 1 0.0169 -8.4951 -5.4813 37 1 2.4347 -7.7195 -2.9808 38 1 2.5197 -9.3803 -2.2490 39 1 -1.0672 -6.9547 -1.9751 40 1 0.3283 -6.4661 -2.9852 41 1 2.2844 -3.8223 2.5039 42 1 3.2139 -2.5208 4.3747 43 1 3.3281 -0.0661 4.2319 44 1 2.5026 1.0932 2.2240 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_2989392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:39 Heat of formation + Delta-G solvation = -83.034306 kcal Electronic energy + Delta-G solvation = -27260.338375 eV Core-core repulsion = 23338.954782 eV Total energy + Delta-G solvation = -3921.383593 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.01476 -41.42521 -40.22515 -38.57238 -37.66575 -37.49301 -35.41728 -32.77520 -31.73981 -31.18648 -30.20179 -28.18425 -26.87803 -26.69783 -24.83778 -23.33142 -22.66071 -22.58122 -20.62866 -19.86078 -19.56549 -18.41350 -18.13680 -17.85548 -17.66026 -17.19177 -16.86897 -16.55244 -16.34998 -16.01141 -15.82287 -15.56618 -15.23258 -15.17833 -15.02142 -14.54054 -14.33042 -14.17553 -13.98298 -13.72323 -13.63881 -13.49092 -13.09713 -13.02752 -12.82146 -12.51881 -12.38298 -12.23205 -12.11478 -11.83101 -11.79581 -11.53287 -11.25712 -11.11349 -10.62369 -10.40312 -9.97515 -9.87118 -9.24490 -5.07425 0.22995 0.39989 1.26416 1.28491 1.30123 1.60819 1.94107 2.40204 2.69937 3.06696 3.19873 3.35840 3.42083 3.52932 3.59162 3.72456 3.78448 3.78685 3.89037 3.92526 3.93703 4.10511 4.16873 4.28283 4.29965 4.34981 4.43005 4.51292 4.53893 4.62712 4.64606 4.73969 4.77348 4.84036 4.90289 4.96738 4.98147 5.05694 5.19104 5.24885 5.27520 5.27919 5.37309 5.51931 5.75854 6.19425 6.32983 6.79830 6.84045 6.87092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.078 4.078 3 Si 0.802 3.198 4 C -0.172 4.172 5 C 0.122 3.878 6 O -0.318 6.318 7 C 0.050 3.950 8 C 0.520 3.480 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.085 3.915 12 C -0.111 4.111 13 C -0.087 4.087 14 C -0.142 4.142 15 C 0.069 3.931 16 O -0.578 6.578 17 C -0.121 4.121 18 C 0.131 3.869 19 C -0.214 4.214 20 C -0.074 4.074 21 C -0.152 4.152 22 C -0.078 4.078 23 H 0.391 0.609 24 H 0.075 0.925 25 H -0.280 1.280 26 H -0.304 1.304 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.396 0.604 37 H 0.048 0.952 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -7.339 9.396 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.186 4.186 3 Si 0.706 3.294 4 C -0.173 4.173 5 C 0.076 3.924 6 O -0.231 6.231 7 C -0.028 4.028 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.349 5.349 11 C -0.036 4.036 12 C -0.149 4.149 13 C -0.088 4.088 14 C -0.180 4.180 15 C 0.010 3.990 16 O -0.386 6.386 17 C -0.159 4.159 18 C 0.009 3.991 19 C -0.232 4.232 20 C -0.092 4.092 21 C -0.169 4.169 22 C -0.095 4.095 23 H 0.240 0.760 24 H 0.092 0.908 25 H -0.207 1.207 26 H -0.232 1.232 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.168 0.832 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.700 -6.185 8.163 10.592 hybrid contribution -0.462 -0.981 -1.212 1.627 sum 2.238 -7.166 6.950 10.231 Atomic orbital electron populations 1.86546 1.17796 1.82233 1.49995 1.25270 0.85126 1.11612 0.96588 0.94025 0.77509 0.73358 0.84485 1.19871 1.07039 0.91426 0.98955 1.19168 0.94501 0.91302 0.87387 1.86187 1.78206 1.18529 1.40147 1.22564 1.03882 0.79919 0.96408 1.20317 0.78875 0.81398 0.88597 1.90765 1.51336 1.61816 1.41818 1.48560 1.61482 1.04336 1.20495 1.22567 1.01895 0.88401 0.90739 1.22535 1.04776 0.95230 0.92322 1.21834 0.97615 0.93175 0.96203 1.23410 0.98909 0.99237 0.96478 1.23010 0.95897 0.91042 0.89038 1.86474 1.71993 1.38554 1.41628 1.23001 0.95745 1.01837 0.95268 1.21838 0.97353 0.91177 0.88773 1.21573 1.05815 1.01706 0.94129 1.21423 0.95368 0.94382 0.98045 1.21478 1.01674 0.94965 0.98822 1.21124 0.96100 1.00209 0.92039 0.75989 0.90754 1.20653 1.23234 0.86423 0.86159 0.89254 0.88938 0.87054 0.88913 0.86103 0.90868 0.89583 0.75392 0.93326 0.85639 0.91645 0.92779 0.83160 0.82634 0.82484 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -6.02 12.88 -148.98 -1.92 -7.94 16 2 C -0.08 -0.71 2.38 71.24 0.17 -0.54 16 3 Si 0.80 2.24 29.92 68.60 2.05 4.29 16 4 C -0.17 -1.08 5.27 -19.77 -0.10 -1.19 16 5 C 0.12 0.92 6.66 22.51 0.15 1.07 16 6 O -0.32 -4.04 9.00 -73.33 -0.66 -4.70 16 7 C 0.05 0.21 4.41 71.24 0.31 0.52 16 8 C 0.52 6.08 7.93 87.66 0.69 6.77 16 9 O -0.58 -14.06 16.78 16.01 0.27 -13.79 16 10 N -0.61 -2.83 3.34 -812.60 -2.71 -5.54 16 11 C 0.09 -0.50 6.50 86.80 0.56 0.07 16 12 C -0.11 0.91 6.34 31.39 0.20 1.11 16 13 C -0.09 0.23 0.92 -52.16 -0.05 0.18 16 14 C -0.14 0.74 7.28 30.72 0.22 0.97 16 15 C 0.07 -0.15 5.27 31.28 0.16 0.02 16 16 O -0.58 -1.81 12.50 -148.98 -1.86 -3.67 16 17 C -0.12 0.22 7.23 30.72 0.22 0.44 16 18 C 0.13 0.76 5.97 86.40 0.52 1.28 16 19 C -0.21 -0.08 9.04 22.37 0.20 0.12 16 20 C -0.07 0.21 10.04 22.26 0.22 0.44 16 21 C -0.15 0.45 10.04 22.28 0.22 0.68 16 22 C -0.08 0.02 8.66 22.25 0.19 0.22 16 23 H 0.39 0.12 8.70 -74.06 -0.64 -0.52 16 24 H 0.07 1.18 7.83 -2.39 -0.02 1.16 16 25 H -0.28 -1.77 7.11 99.48 0.71 -1.07 16 26 H -0.30 -3.28 7.11 99.48 0.71 -2.57 16 27 H 0.12 -0.26 7.66 -2.39 -0.02 -0.28 16 28 H 0.12 -0.29 7.66 -2.39 -0.02 -0.31 16 29 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.11 -1.38 7.99 -2.39 -0.02 -1.40 16 32 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 34 H 0.07 -0.26 8.12 -2.39 -0.02 -0.28 16 35 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.40 -1.96 9.12 -74.06 -0.68 -2.64 16 37 H 0.05 0.23 8.13 -2.38 -0.02 0.21 16 38 H 0.13 -0.93 8.05 -2.39 -0.02 -0.95 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.05 0.74 7.15 -2.38 -0.02 0.72 16 41 H 0.15 -0.80 6.30 -2.91 -0.02 -0.82 16 42 H 0.16 -1.34 8.06 -2.91 -0.02 -1.36 16 43 H 0.16 -1.35 8.06 -2.91 -0.02 -1.37 16 44 H 0.16 -0.97 5.13 -2.91 -0.01 -0.99 16 Total: 0.00 -34.40 359.37 -1.18 -35.58 By element: Atomic # 1 Polarization: -16.13 SS G_CDS: -0.25 Total: -16.38 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 3.91 Total: 12.15 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -2.71 Total: -5.54 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -4.17 Total: -30.09 kcal Atomic # 14 Polarization: 2.24 SS G_CDS: 2.05 Total: 4.29 kcal Total: -34.40 -1.18 -35.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_2989392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.456 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds