Wall clock time and date at job start Tue Mar 9 2021 13:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47076 * 2 1 4 4 C 1.50694 * 109.47095 * 239.99743 * 2 1 3 5 5 C 1.38252 * 119.97154 * 120.02414 * 4 2 1 6 6 C 1.38289 * 120.11157 * 179.97438 * 5 4 2 7 7 C 1.38124 * 120.05441 * 359.67615 * 6 5 4 8 8 C 1.38759 * 119.94308 * 0.59766 * 7 6 5 9 9 O 1.35897 * 120.05250 * 179.69632 * 8 7 6 10 10 C 1.42897 * 117.00465 * 359.72986 * 9 8 7 11 11 C 1.50701 * 109.47336 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99817 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99839 * 179.97438 * 11 10 9 14 14 C 1.47124 * 125.59044 * 359.97438 * 13 11 10 15 15 C 1.54587 * 107.35775 * 179.08674 * 14 13 11 16 16 C 1.53752 * 102.74851 * 339.14914 * 15 14 13 17 17 C 1.52312 * 116.25568 * 265.00318 * 16 15 14 18 18 C 1.54055 * 86.60848 * 216.59551 * 17 16 15 19 19 O 1.42893 * 113.57038 * 269.69997 * 18 17 16 20 20 C 1.52306 * 116.26274 * 162.65712 * 16 15 14 21 21 C 1.47703 * 125.58847 * 179.97438 * 13 11 10 22 22 C 1.38160 * 119.97514 * 300.00071 * 4 2 1 23 23 H 0.96698 * 113.99749 * 59.99788 * 1 2 3 24 24 H 1.08998 * 109.47012 * 119.99821 * 2 1 3 25 25 H 1.48498 * 110.00109 * 59.99708 * 3 2 1 26 26 H 1.48500 * 109.99830 * 181.31556 * 3 2 1 27 27 H 1.07996 * 119.94093 * 359.97438 * 5 4 2 28 28 H 1.07996 * 119.97108 * 179.97438 * 6 5 4 29 29 H 1.07996 * 120.02470 * 180.32139 * 7 6 5 30 30 H 1.09004 * 109.47292 * 59.99370 * 10 9 8 31 31 H 1.09000 * 109.47085 * 299.99965 * 10 9 8 32 32 H 1.09003 * 109.87123 * 59.64484 * 14 13 11 33 33 H 1.08999 * 109.87212 * 298.52946 * 14 13 11 34 34 H 1.08997 * 110.75839 * 97.46696 * 15 14 13 35 35 H 1.09000 * 110.75423 * 220.84014 * 15 14 13 36 36 H 1.08995 * 113.69070 * 331.02173 * 17 16 15 37 37 H 1.08997 * 113.69065 * 102.16978 * 17 16 15 38 38 H 1.09000 * 113.63531 * 138.95452 * 18 17 16 39 39 H 0.96705 * 114.00014 * 277.79747 * 19 18 17 40 40 H 1.09003 * 113.68778 * 257.82275 * 20 16 15 41 41 H 1.08996 * 113.69027 * 28.87248 * 20 16 15 42 42 H 1.09000 * 110.39902 * 321.33825 * 21 13 11 43 43 H 1.08998 * 110.39589 * 83.63037 * 21 13 11 44 44 H 1.08005 * 120.02982 * 0.04096 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7265 -0.0382 -2.1398 6 6 3.1895 -0.6875 -3.2696 7 6 2.8638 -2.0118 -3.4887 8 6 2.0612 -2.6870 -2.5804 9 8 1.7343 -3.9882 -2.7969 10 6 2.2470 -4.5972 -3.9836 11 6 1.7844 -6.0298 -4.0533 12 8 1.0849 -6.4846 -3.1731 13 7 2.1481 -6.8055 -5.0938 14 6 2.9890 -6.3824 -6.2244 15 6 3.1578 -7.6043 -7.1562 16 6 2.8400 -8.7867 -6.2262 17 6 4.0334 -9.4622 -5.5633 18 6 3.2681 -10.7869 -5.7450 19 8 2.4299 -11.1191 -4.6364 20 6 2.5145 -10.1102 -6.9059 21 6 1.7676 -8.2197 -5.2859 22 6 1.5972 -2.0332 -1.4485 23 1 -0.3933 0.4417 -0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4680 1.2084 26 1 3.5346 1.7703 -0.0320 27 1 2.9865 0.9958 -1.9676 28 1 3.8102 -0.1600 -3.9788 29 1 3.2299 -2.5198 -4.3686 30 1 3.3365 -4.5680 -3.9654 31 1 1.8836 -4.0548 -4.8565 32 1 3.9635 -6.0571 -5.8600 33 1 2.5030 -5.5695 -6.7639 34 1 2.4482 -7.5610 -7.9824 35 1 4.1807 -7.6688 -7.5271 36 1 4.9510 -9.4028 -6.1485 37 1 4.1745 -9.1774 -4.5208 38 1 3.9001 -11.6169 -6.0607 39 1 2.8966 -11.5444 -3.9040 40 1 1.4493 -10.3400 -6.9296 41 1 2.9972 -10.2351 -7.8752 42 1 1.7793 -8.7491 -4.3332 43 1 0.7818 -8.2887 -5.7459 44 1 0.9757 -2.5579 -0.7379 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_4860298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:20 Heat of formation + Delta-G solvation = -83.003480 kcal Electronic energy + Delta-G solvation = -26650.891413 eV Core-core repulsion = 22729.509157 eV Total energy + Delta-G solvation = -3921.382256 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99488 -41.36776 -40.23485 -38.97897 -37.66147 -37.23653 -35.40003 -32.49628 -31.98355 -31.32508 -30.14032 -28.13937 -26.89629 -26.76984 -24.70473 -23.69458 -22.61997 -22.41181 -20.58897 -19.84812 -19.40867 -18.53874 -17.94824 -17.79585 -17.46518 -17.42561 -17.03667 -16.71572 -16.26456 -16.14968 -15.94419 -15.67489 -15.21081 -14.98288 -14.80632 -14.57689 -14.32616 -14.20622 -14.03983 -13.81790 -13.59800 -13.49756 -13.14750 -12.94340 -12.82475 -12.63911 -12.35241 -12.17247 -12.00718 -11.79715 -11.70226 -11.63025 -11.16605 -11.11744 -10.59387 -10.52231 -9.94334 -9.84319 -9.32273 -4.99126 0.18137 0.36201 1.23606 1.30961 1.35554 1.64919 1.96488 2.40283 2.64996 3.09762 3.19901 3.36011 3.45392 3.50468 3.65356 3.65964 3.76028 3.78260 3.91137 3.92853 3.97817 4.09815 4.20520 4.22583 4.31034 4.33416 4.44885 4.47415 4.56285 4.59989 4.68813 4.75791 4.81281 4.86262 4.92055 4.95841 4.97818 5.09741 5.20573 5.23030 5.26794 5.30525 5.34580 5.42386 5.67327 6.20707 6.33420 6.73541 6.82019 6.88755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.089 4.089 3 Si 0.800 3.200 4 C -0.083 4.083 5 C -0.156 4.156 6 C -0.068 4.068 7 C -0.202 4.202 8 C 0.111 3.889 9 O -0.326 6.326 10 C 0.050 3.950 11 C 0.520 3.480 12 O -0.580 6.580 13 N -0.613 5.613 14 C 0.085 3.915 15 C -0.112 4.112 16 C -0.088 4.088 17 C -0.149 4.149 18 C 0.068 3.932 19 O -0.576 6.576 20 C -0.115 4.115 21 C 0.131 3.869 22 C -0.151 4.151 23 H 0.396 0.604 24 H 0.100 0.900 25 H -0.302 1.302 26 H -0.278 1.278 27 H 0.152 0.848 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.394 0.606 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 2.595 -11.191 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.197 4.197 3 Si 0.704 3.296 4 C -0.084 4.084 5 C -0.174 4.174 6 C -0.085 4.085 7 C -0.220 4.220 8 C 0.067 3.933 9 O -0.240 6.240 10 C -0.027 4.027 11 C 0.309 3.691 12 O -0.459 6.459 13 N -0.347 5.347 14 C -0.036 4.036 15 C -0.150 4.150 16 C -0.089 4.089 17 C -0.187 4.187 18 C 0.009 3.991 19 O -0.384 6.384 20 C -0.152 4.152 21 C 0.009 3.991 22 C -0.170 4.170 23 H 0.245 0.755 24 H 0.117 0.883 25 H -0.230 1.230 26 H -0.205 1.205 27 H 0.169 0.831 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.244 0.756 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.238 2.808 -9.970 12.636 hybrid contribution 0.028 -1.372 1.134 1.780 sum 7.266 1.436 -8.836 11.530 Atomic orbital electron populations 1.86477 1.17436 1.82331 1.50437 1.25480 0.85304 1.12105 0.96806 0.93480 0.77716 0.73871 0.84520 1.20219 0.97868 0.93148 0.97157 1.21239 0.99997 1.00860 0.95264 1.21353 0.97146 0.93305 0.96729 1.21624 1.02289 0.97008 1.01123 1.19231 0.95927 0.82701 0.95469 1.86120 1.71413 1.23607 1.42825 1.22609 1.01511 0.89936 0.88680 1.20323 0.80091 0.88009 0.80683 1.90758 1.39719 1.75561 1.39911 1.48556 1.51374 1.12374 1.22425 1.22573 0.95390 0.99243 0.86358 1.22542 1.04832 0.90901 0.96685 1.21791 0.95721 0.95234 0.96158 1.23472 0.97613 0.96425 1.01144 1.23028 0.92330 0.95852 0.87853 1.86446 1.39437 1.82577 1.29979 1.22910 1.01629 0.92791 0.97905 1.21766 0.97582 0.80252 0.99539 1.20290 1.04115 0.95062 0.97562 0.75451 0.88269 1.23020 1.20459 0.83129 0.81645 0.82287 0.85977 0.85731 0.88970 0.88808 0.89121 0.87039 0.86404 0.92503 0.89660 0.75580 0.91613 0.85430 0.92437 0.92099 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.34 12.77 -148.98 -1.90 -4.25 16 2 C -0.09 -0.23 2.82 71.23 0.20 -0.03 16 3 Si 0.80 -1.45 29.79 68.60 2.04 0.59 16 4 C -0.08 -0.27 5.39 -19.88 -0.11 -0.37 16 5 C -0.16 0.28 8.67 22.29 0.19 0.48 16 6 C -0.07 0.27 10.04 22.25 0.22 0.49 16 7 C -0.20 0.32 9.04 22.37 0.20 0.53 16 8 C 0.11 0.69 6.69 22.51 0.15 0.85 16 9 O -0.33 -3.33 9.67 -73.36 -0.71 -4.04 16 10 C 0.05 0.06 4.41 71.24 0.31 0.37 16 11 C 0.52 4.61 7.93 87.66 0.69 5.31 16 12 O -0.58 -12.33 16.78 16.01 0.27 -12.06 16 13 N -0.61 -1.43 3.34 -813.10 -2.71 -4.14 16 14 C 0.09 -0.67 6.50 86.80 0.56 -0.11 16 15 C -0.11 1.05 6.35 31.39 0.20 1.25 16 16 C -0.09 0.32 0.93 -52.25 -0.05 0.28 16 17 C -0.15 0.69 7.21 30.72 0.22 0.91 16 18 C 0.07 -0.20 5.27 31.28 0.16 -0.04 16 19 O -0.58 -1.28 12.48 -148.98 -1.86 -3.14 16 20 C -0.11 0.49 7.28 30.72 0.22 0.72 16 21 C 0.13 0.58 5.94 86.31 0.51 1.09 16 22 C -0.15 -1.26 9.55 22.36 0.21 -1.05 16 23 H 0.40 -1.79 8.70 -74.06 -0.64 -2.44 16 24 H 0.10 0.49 7.96 -2.39 -0.02 0.47 16 25 H -0.30 -1.80 7.11 99.48 0.71 -1.10 16 26 H -0.28 -0.43 7.11 99.48 0.71 0.27 16 27 H 0.15 -1.02 4.87 -2.91 -0.01 -1.03 16 28 H 0.17 -1.78 8.06 -2.91 -0.02 -1.81 16 29 H 0.16 -1.35 6.30 -2.91 -0.02 -1.37 16 30 H 0.12 -0.67 7.65 -2.38 -0.02 -0.69 16 31 H 0.13 -0.72 7.67 -2.39 -0.02 -0.73 16 32 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.11 -1.51 7.99 -2.39 -0.02 -1.53 16 36 H 0.12 -1.09 8.05 -2.39 -0.02 -1.11 16 37 H 0.06 -0.02 8.12 -2.39 -0.02 -0.04 16 38 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.39 -1.86 9.12 -74.05 -0.68 -2.54 16 40 H 0.07 -0.03 8.12 -2.39 -0.02 -0.05 16 41 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H 0.06 0.64 7.14 -2.39 -0.02 0.62 16 43 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 Total: 0.00 -31.46 359.72 -1.20 -32.66 By element: Atomic # 1 Polarization: -16.02 SS G_CDS: -0.25 Total: -16.28 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 3.92 Total: 10.66 kcal Atomic # 7 Polarization: -1.43 SS G_CDS: -2.71 Total: -4.14 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -4.20 Total: -23.49 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.04 Total: 0.59 kcal Total: -31.46 -1.20 -32.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_4860298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.347 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds