Wall clock time and date at job start Tue Mar 9 2021 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 112.90508 * 2 1 4 4 O 1.42892 * 109.47344 * 48.74715 * 3 2 1 5 5 C 1.53780 * 113.61561 * 131.24937 * 2 1 3 6 6 C 1.53780 * 87.08155 * 139.98428 * 5 2 1 7 7 H 1.08995 * 113.69543 * 89.13026 * 6 5 2 8 8 N 1.46505 * 113.61219 * 220.01991 * 6 5 2 9 9 C 1.34777 * 120.00115 * 252.49515 * 8 6 5 10 10 O 1.21288 * 119.99593 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 6 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 9 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38711 * 120.05562 * 179.97438 * 14 13 12 16 16 C 1.38162 * 119.94377 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.97406 * 180.02562 * 16 15 14 18 18 O 1.42894 * 109.47123 * 64.99928 * 17 16 15 19 19 Si 1.86301 * 109.46970 * 184.99958 * 17 16 15 20 20 C 1.38250 * 120.05723 * 359.97438 * 16 15 14 21 21 C 1.38288 * 120.10917 * 359.97438 * 20 16 15 22 22 C 1.38129 * 120.05279 * 359.76642 * 21 20 16 23 23 C 1.53782 * 113.61526 * 228.74810 * 2 1 3 24 24 H 1.09007 * 109.47097 * 191.25129 * 1 2 3 25 25 H 1.08997 * 109.47265 * 311.25159 * 1 2 3 26 26 H 1.08998 * 109.46899 * 71.25779 * 1 2 3 27 27 H 1.09005 * 109.46907 * 168.74931 * 3 2 1 28 28 H 1.08996 * 109.47098 * 288.74478 * 3 2 1 29 29 H 0.96699 * 114.00246 * 179.97438 * 4 3 2 30 30 H 1.09005 * 113.61320 * 25.43354 * 5 2 1 31 31 H 1.08997 * 113.61992 * 254.53099 * 5 2 1 32 32 H 0.97003 * 120.00244 * 72.49545 * 8 6 5 33 33 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 34 34 H 1.08998 * 109.46862 * 300.00562 * 11 9 8 35 35 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 36 36 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 37 37 H 1.07999 * 120.02730 * 0.02562 * 15 14 13 38 38 H 1.08996 * 109.46548 * 304.99295 * 17 16 15 39 39 H 0.96698 * 114.00529 * 59.99567 * 18 17 16 40 40 H 1.48499 * 110.00183 * 58.67956 * 19 17 16 41 41 H 1.48503 * 109.99550 * 180.02562 * 19 17 16 42 42 H 1.07997 * 119.94730 * 179.97438 * 20 16 15 43 43 H 1.07992 * 119.97264 * 180.02562 * 21 20 16 44 44 H 1.08010 * 120.02456 * 180.27612 * 22 21 20 45 45 H 1.08994 * 113.61586 * 105.47210 * 23 2 1 46 46 H 1.09002 * 113.61355 * 334.56403 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 8 1.4926 2.1939 1.0128 5 6 2.1460 -0.9290 1.0594 6 6 3.1924 -1.3135 0.0001 7 1 4.0717 -0.6695 -0.0009 8 7 3.5311 -2.7389 0.0001 9 6 4.7263 -3.1475 0.4702 10 8 5.5213 -2.3351 0.8936 11 6 5.0750 -4.6135 0.4697 12 6 6.4772 -4.8045 1.0514 13 8 6.8081 -6.1946 1.0504 14 6 8.0291 -6.5386 1.5380 15 6 8.4154 -7.8705 1.5673 16 6 9.6570 -8.2177 2.0640 17 6 10.0776 -9.6645 2.0957 18 8 10.1906 -10.1570 0.7590 19 14 11.7245 -9.8137 2.9538 20 6 10.5143 -7.2389 2.5311 21 6 10.1320 -5.9102 2.5020 22 6 8.8938 -5.5576 2.0014 23 6 2.1460 -0.9291 -1.0593 24 1 -0.3634 -1.0080 0.2005 25 1 -0.3634 0.6776 0.7726 26 1 -0.3633 0.3302 -0.9732 27 1 3.1953 1.3517 0.2005 28 1 1.9627 1.8725 -0.9731 29 1 1.8217 3.1013 1.0705 30 1 1.4945 -1.7535 1.3490 31 1 2.5650 -0.3989 1.9146 32 1 2.8952 -3.3886 -0.3382 33 1 5.0503 -4.9926 -0.5520 34 1 4.3527 -5.1589 1.0770 35 1 6.5015 -4.4256 2.0731 36 1 7.1997 -4.2590 0.4443 37 1 7.7461 -8.6355 1.2022 38 1 9.3322 -10.2478 2.6361 39 1 10.8378 -9.6835 0.2187 40 1 11.6285 -9.2755 4.3344 41 1 12.1507 -11.2358 2.9910 42 1 11.4843 -7.5123 2.9194 43 1 10.8036 -5.1474 2.8670 44 1 8.5974 -4.5193 1.9747 45 1 2.5650 -0.3989 -1.9145 46 1 1.4945 -1.7536 -1.3489 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:26 Heat of formation + Delta-G solvation = -110.444547 kcal Electronic energy + Delta-G solvation = -26190.675904 eV Core-core repulsion = 22240.792236 eV Total energy + Delta-G solvation = -3949.883669 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62623 -41.25292 -40.10392 -39.10018 -37.29142 -37.19573 -34.86293 -33.30074 -32.47944 -30.99354 -30.15258 -27.43265 -27.04256 -26.78951 -25.59486 -23.69929 -22.96839 -21.99916 -21.48100 -19.55476 -19.24753 -18.38607 -18.11291 -17.77074 -17.51320 -17.29470 -17.11904 -16.86536 -16.26180 -16.16009 -16.02602 -15.69609 -15.37484 -14.96533 -14.75044 -14.51600 -14.41821 -14.21857 -14.20214 -13.97167 -13.62012 -13.27162 -13.23955 -13.02113 -12.95364 -12.84434 -12.63290 -12.38759 -12.05304 -11.83698 -11.83232 -11.64422 -11.51246 -11.29421 -11.05064 -10.81145 -10.48879 -10.09696 -9.96262 -9.29216 -4.98383 0.17982 0.37214 1.29616 1.47180 1.65576 1.70158 1.97330 2.49113 2.64784 3.11248 3.38257 3.49820 3.54730 3.60558 3.66165 3.73725 3.82896 3.87283 3.94182 4.01849 4.07923 4.18571 4.21949 4.25554 4.35092 4.41407 4.48806 4.51983 4.57873 4.61659 4.64923 4.72929 4.73972 4.79873 4.83348 4.86677 4.95884 5.03980 5.13623 5.23659 5.24772 5.36244 5.40692 5.42080 5.51321 5.68776 6.30523 6.44701 6.75788 6.84749 7.12899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C 0.093 3.907 4 O -0.590 6.590 5 C -0.140 4.140 6 C 0.118 3.882 7 H 0.096 0.904 8 N -0.704 5.704 9 C 0.520 3.480 10 O -0.585 6.585 11 C -0.133 4.133 12 C 0.074 3.926 13 O -0.325 6.325 14 C 0.116 3.884 15 C -0.142 4.142 16 C -0.085 4.085 17 C -0.078 4.078 18 O -0.555 6.555 19 Si 0.785 3.215 20 C -0.155 4.155 21 C -0.075 4.075 22 C -0.211 4.211 23 C -0.119 4.119 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.396 0.604 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.420 0.580 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.396 0.604 40 H -0.286 1.286 41 H -0.298 1.298 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.085 0.915 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 2.071 -3.912 4.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C 0.015 3.985 4 O -0.398 6.398 5 C -0.178 4.178 6 C 0.012 3.988 7 H 0.114 0.886 8 N -0.356 5.356 9 C 0.308 3.692 10 O -0.465 6.465 11 C -0.173 4.173 12 C -0.001 4.001 13 O -0.239 6.239 14 C 0.071 3.929 15 C -0.161 4.161 16 C -0.085 4.085 17 C -0.187 4.187 18 O -0.363 6.363 19 Si 0.691 3.309 20 C -0.172 4.172 21 C -0.093 4.093 22 C -0.230 4.230 23 C -0.157 4.157 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.257 0.743 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.246 0.754 40 H -0.212 1.212 41 H -0.226 1.226 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.154 0.846 45 H 0.104 0.896 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.411 1.232 -2.744 3.036 hybrid contribution -0.702 0.587 0.076 0.918 sum -1.113 1.818 -2.669 3.416 Atomic orbital electron populations 1.21557 0.92915 1.01990 1.01991 1.21633 0.96606 0.93023 0.97434 1.21999 0.95082 0.90341 0.91049 1.86418 1.66456 1.28916 1.58014 1.23553 0.97872 0.99343 0.97081 1.22534 0.96740 0.81916 0.97567 0.88583 1.45856 1.17360 1.08893 1.63472 1.20672 0.81566 0.90834 0.76177 1.90730 1.50578 1.56900 1.48329 1.21444 0.96817 0.92571 1.06434 1.22434 0.96848 0.79138 1.01681 1.85951 1.31613 1.27531 1.78796 1.19152 0.84847 0.94008 0.94925 1.20330 0.97644 0.93444 1.04680 1.20252 0.93732 0.96391 0.98171 1.25303 1.11822 0.91349 0.90269 1.86470 1.66319 1.60737 1.22770 0.93572 0.79014 0.79257 0.79071 1.21176 1.00218 0.92825 1.03014 1.21264 0.95289 0.96813 0.95922 1.21555 0.96420 0.99522 1.05508 1.23404 0.96507 0.99415 0.96339 0.91763 0.93233 0.91983 0.93468 0.92021 0.75459 0.88734 0.92861 0.74259 0.85386 0.85730 0.91891 0.91512 0.85558 0.87672 0.75420 1.21246 1.22627 0.83193 0.82831 0.84617 0.89615 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 9.08 71.98 0.65 0.82 16 2 C -0.09 0.16 1.19 -51.66 -0.06 0.10 16 3 C 0.09 -0.12 6.39 71.98 0.46 0.34 16 4 O -0.59 -0.82 12.64 -148.98 -1.88 -2.70 16 5 C -0.14 0.02 6.99 31.12 0.22 0.24 16 6 C 0.12 -0.18 3.89 45.52 0.18 -0.01 16 7 H 0.10 0.28 6.98 -2.39 -0.02 0.26 16 8 N -0.70 2.68 5.35 -440.03 -2.36 0.32 16 9 C 0.52 0.65 7.83 87.66 0.69 1.34 16 10 O -0.59 -6.08 15.58 -3.05 -0.05 -6.12 16 11 C -0.13 0.46 6.07 29.85 0.18 0.64 16 12 C 0.07 0.15 4.03 71.98 0.29 0.44 16 13 O -0.32 -1.68 10.14 -92.43 -0.94 -2.62 16 14 C 0.12 0.68 6.69 22.50 0.15 0.83 16 15 C -0.14 -0.79 9.62 22.36 0.22 -0.58 16 16 C -0.08 -0.20 5.35 -19.88 -0.11 -0.31 16 17 C -0.08 -0.08 2.80 71.24 0.20 0.12 16 18 O -0.55 -0.92 12.83 -148.98 -1.91 -2.83 16 19 Si 0.79 -1.35 29.80 68.60 2.04 0.69 16 20 C -0.15 0.03 8.67 22.28 0.19 0.23 16 21 C -0.08 -0.03 10.04 22.26 0.22 0.20 16 22 C -0.21 -0.73 9.04 22.37 0.20 -0.53 16 23 C -0.12 0.68 6.98 31.12 0.22 0.90 16 24 H 0.06 -0.20 7.94 -2.38 -0.02 -0.22 16 25 H 0.05 0.15 7.33 -2.39 -0.02 0.13 16 26 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.05 -0.06 7.34 -2.38 -0.02 -0.08 16 28 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.40 -2.60 9.12 -74.06 -0.68 -3.28 16 30 H 0.09 -0.17 7.96 -2.38 -0.02 -0.19 16 31 H 0.05 0.24 8.10 -2.39 -0.02 0.22 16 32 H 0.42 -4.30 8.73 -92.71 -0.81 -5.11 16 33 H 0.13 -0.94 8.14 -2.39 -0.02 -0.95 16 34 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.06 0.22 7.64 -2.39 -0.02 0.21 16 36 H 0.07 0.19 7.60 -2.39 -0.02 0.18 16 37 H 0.13 0.76 8.06 -2.91 -0.02 0.73 16 38 H 0.11 0.25 7.96 -2.39 -0.02 0.23 16 39 H 0.40 -2.61 8.70 -74.06 -0.64 -3.26 16 40 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 41 H -0.30 -1.66 7.11 99.48 0.71 -0.95 16 42 H 0.15 -0.80 4.90 -2.91 -0.01 -0.82 16 43 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 44 H 0.14 0.28 6.30 -2.91 -0.02 0.26 16 45 H 0.09 -0.56 8.10 -2.39 -0.02 -0.58 16 46 H 0.11 -1.02 8.08 -2.39 -0.02 -1.04 16 Total: 0.00 -22.67 376.69 -2.27 -24.94 By element: Atomic # 1 Polarization: -15.38 SS G_CDS: -1.07 Total: -16.45 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 3.90 Total: 4.77 kcal Atomic # 7 Polarization: 2.68 SS G_CDS: -2.36 Total: 0.32 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -4.78 Total: -14.28 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: 2.04 Total: 0.69 kcal Total: -22.67 -2.27 -24.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.505 kcal (2) G-P(sol) polarization free energy of solvation -22.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds