Wall clock time and date at job start Tue Mar 9 2021 13:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85100 * 2 1 4 4 O 1.42901 * 109.47069 * 311.19540 * 3 2 1 5 5 C 1.53787 * 113.60890 * 131.19371 * 2 1 3 6 6 C 1.53784 * 87.07923 * 139.98364 * 5 2 1 7 7 H 1.09002 * 113.61478 * 89.11632 * 6 5 2 8 8 N 1.46497 * 113.61569 * 220.01663 * 6 5 2 9 9 C 1.34769 * 120.00274 * 204.99925 * 8 6 5 10 10 O 1.21611 * 119.99948 * 0.02562 * 9 8 6 11 11 C 1.47384 * 120.00211 * 179.97438 * 9 8 6 12 12 C 1.36409 * 127.19245 * 179.97438 * 11 9 8 13 13 C 1.50700 * 125.80570 * 0.02562 * 12 11 9 14 14 O 1.42901 * 109.47321 * 89.99831 * 13 12 11 15 15 C 1.35888 * 117.00205 * 180.02562 * 14 13 12 16 16 C 1.38743 * 120.05852 * 359.72676 * 15 14 13 17 17 C 1.38138 * 119.94494 * 179.74725 * 16 15 14 18 18 C 1.38260 * 120.05708 * 0.50117 * 17 16 15 19 19 C 1.50703 * 119.94489 * 179.74660 * 18 17 16 20 20 O 1.42897 * 109.47147 * 245.02457 * 19 18 17 21 21 Si 1.86296 * 109.47009 * 5.02551 * 19 18 17 22 22 C 1.38266 * 120.11327 * 359.77199 * 18 17 16 23 23 C 1.38146 * 120.05284 * 359.97438 * 22 18 17 24 24 O 1.33656 * 108.39723 * 180.02562 * 12 11 9 25 25 C 1.34213 * 110.90822 * 359.97438 * 24 12 11 26 26 C 1.34183 * 109.12449 * 359.70981 * 25 24 12 27 27 C 1.53779 * 87.08045 * 334.56667 * 6 5 2 28 28 H 1.08994 * 109.47401 * 288.80672 * 1 2 3 29 29 H 1.09006 * 109.46633 * 48.80711 * 1 2 3 30 30 H 1.09005 * 109.47442 * 168.79997 * 1 2 3 31 31 H 1.09005 * 109.46827 * 71.19060 * 3 2 1 32 32 H 1.08994 * 109.46980 * 191.19023 * 3 2 1 33 33 H 0.96703 * 113.99793 * 180.02562 * 4 3 2 34 34 H 1.09004 * 113.61202 * 254.53117 * 5 2 1 35 35 H 1.08994 * 113.61447 * 25.43549 * 5 2 1 36 36 H 0.97009 * 119.99534 * 24.99936 * 8 6 5 37 37 H 1.08999 * 109.47632 * 210.00345 * 13 12 11 38 38 H 1.09002 * 109.46640 * 330.00102 * 13 12 11 39 39 H 1.08000 * 120.02237 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.97292 * 180.27967 * 17 16 15 41 41 H 1.09006 * 109.47244 * 125.02566 * 19 18 17 42 42 H 0.96702 * 114.00149 * 59.99950 * 20 19 18 43 43 H 1.48504 * 109.99838 * 179.97438 * 21 19 18 44 44 H 1.48493 * 110.00344 * 301.31754 * 21 19 18 45 45 H 1.08002 * 119.97405 * 179.97438 * 22 18 17 46 46 H 1.07996 * 120.02722 * 179.97438 * 23 22 18 47 47 H 1.08005 * 125.43923 * 180.02562 * 25 24 12 48 48 H 1.07995 * 127.02485 * 180.26459 * 26 25 24 49 49 H 1.09006 * 113.61307 * 270.88660 * 27 6 5 50 50 H 1.08999 * 113.69146 * 139.99146 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 8 1.4914 2.1934 -1.0138 5 6 2.1459 -0.9281 1.0604 6 6 3.1923 -1.3137 0.0014 7 1 4.0711 -0.6688 0.0009 8 7 3.5310 -2.7389 0.0029 9 6 4.7262 -3.1480 -0.4667 10 8 5.5237 -2.3340 -0.8912 11 6 5.0672 -4.5819 -0.4648 12 6 6.2254 -5.1546 -0.9021 13 6 7.4067 -4.4215 -1.4837 14 8 8.3084 -4.0630 -0.4347 15 6 9.4339 -3.3904 -0.7916 16 6 9.6687 -3.0868 -2.1249 17 6 10.8111 -2.3984 -2.4845 18 6 11.7252 -2.0211 -1.5183 19 6 12.9735 -1.2752 -1.9141 20 8 14.1192 -2.0831 -1.6370 21 14 12.9134 -0.8864 -3.7351 22 6 11.4964 -2.3274 -0.1895 23 6 10.3530 -3.0111 0.1759 24 8 6.1345 -6.4766 -0.7272 25 6 4.9520 -6.8079 -0.1858 26 6 4.2327 -5.6931 0.0152 27 6 2.1461 -0.9302 -1.0583 28 1 -0.3634 0.3313 0.9727 29 1 -0.3633 0.6769 -0.7734 30 1 -0.3634 -1.0081 -0.1996 31 1 1.9599 1.8734 0.9728 32 1 3.1942 1.3532 -0.1994 33 1 1.8197 3.1012 -1.0715 34 1 2.5649 -0.3970 1.9151 35 1 1.4944 -1.7522 1.3507 36 1 2.8950 -3.3882 0.3418 37 1 7.9185 -5.0661 -2.1983 38 1 7.0614 -3.5201 -1.9900 39 1 8.9570 -3.3852 -2.8805 40 1 10.9921 -2.1579 -3.5217 41 1 13.0376 -0.3469 -1.3463 42 1 14.1291 -2.9268 -2.1094 43 1 14.1386 -0.1503 -4.1379 44 1 12.7940 -2.1420 -4.5189 45 1 12.2122 -2.0320 0.5633 46 1 10.1749 -3.2505 1.2138 47 1 4.6325 -7.8112 0.0549 48 1 3.2419 -5.6262 0.4396 49 1 1.4945 -1.7550 -1.3471 50 1 2.5638 -0.4008 -1.9147 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:39 Heat of formation + Delta-G solvation = -80.554297 kcal Electronic energy + Delta-G solvation = -33590.274513 eV Core-core repulsion = 28938.326370 eV Total energy + Delta-G solvation = -4651.948144 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.72969 -41.43933 -41.31467 -39.86152 -39.26562 -37.32993 -37.17321 -34.98420 -33.94076 -32.85830 -32.00781 -31.41992 -30.37835 -27.95353 -27.35233 -26.77666 -26.22077 -25.06273 -23.84236 -23.03224 -22.40157 -21.80970 -21.11636 -19.54892 -19.53501 -19.00801 -18.39429 -18.30506 -17.51698 -17.36241 -17.22279 -16.98560 -16.74189 -16.40181 -16.18877 -16.13943 -15.95096 -15.76684 -15.60321 -15.34565 -14.77518 -14.63856 -14.41128 -14.38758 -14.28938 -14.12388 -13.88827 -13.64834 -13.59925 -13.47710 -13.22143 -13.15688 -12.96089 -12.66401 -12.34563 -12.16377 -12.09073 -11.80555 -11.63493 -11.48933 -11.27704 -11.12176 -10.97527 -10.79093 -10.59761 -10.11976 -10.07577 -9.83133 -9.27756 -4.92087 -0.05266 0.24256 0.27197 1.02439 1.31440 1.50552 1.58346 1.93891 2.04575 2.13710 2.45369 2.61300 3.13264 3.33048 3.39290 3.43636 3.58954 3.61918 3.66859 3.70191 3.76479 3.78818 3.88409 3.91751 4.02840 4.09839 4.21045 4.26817 4.39201 4.39967 4.44777 4.53115 4.54084 4.56448 4.65011 4.67173 4.73911 4.79531 4.82087 4.84870 4.89229 4.93343 5.04951 5.12027 5.15506 5.23015 5.25451 5.26137 5.42596 5.45013 5.51959 5.66399 5.87719 6.23267 6.45023 6.49289 6.87980 7.10328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C 0.093 3.907 4 O -0.588 6.588 5 C -0.120 4.120 6 C 0.119 3.881 7 H 0.097 0.903 8 N -0.696 5.696 9 C 0.583 3.417 10 O -0.572 6.572 11 C -0.223 4.223 12 C 0.039 3.961 13 C 0.135 3.865 14 O -0.322 6.322 15 C 0.125 3.875 16 C -0.206 4.206 17 C -0.078 4.078 18 C -0.157 4.157 19 C -0.077 4.077 20 O -0.549 6.549 21 Si 0.762 3.238 22 C -0.057 4.057 23 C -0.163 4.163 24 O -0.178 6.178 25 C -0.012 4.012 26 C -0.196 4.196 27 C -0.137 4.137 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.396 0.604 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.416 0.584 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.386 0.614 43 H -0.302 1.302 44 H -0.280 1.280 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.252 0.748 48 H 0.193 0.807 49 H 0.094 0.906 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -1.783 1.407 6.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 C 0.015 3.985 4 O -0.397 6.397 5 C -0.158 4.158 6 C 0.014 3.986 7 H 0.115 0.885 8 N -0.347 5.347 9 C 0.372 3.628 10 O -0.453 6.453 11 C -0.228 4.228 12 C -0.014 4.014 13 C 0.061 3.939 14 O -0.237 6.237 15 C 0.080 3.920 16 C -0.225 4.225 17 C -0.095 4.095 18 C -0.158 4.158 19 C -0.186 4.186 20 O -0.357 6.357 21 Si 0.668 3.332 22 C -0.075 4.075 23 C -0.181 4.181 24 O -0.074 6.074 25 C -0.078 4.078 26 C -0.215 4.215 27 C -0.176 4.176 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.253 0.747 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.142 0.858 42 H 0.235 0.765 43 H -0.230 1.230 44 H -0.206 1.206 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.268 0.732 48 H 0.210 0.790 49 H 0.112 0.888 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.611 -1.635 0.752 5.893 hybrid contribution 0.480 -0.727 0.396 0.957 sum -5.130 -2.362 1.148 5.764 Atomic orbital electron populations 1.21559 0.92809 1.02032 1.02030 1.21598 0.96638 0.92954 0.97184 1.21992 0.95114 0.90325 0.91054 1.86418 1.66479 1.28905 1.57871 1.23422 0.96480 0.99490 0.96406 1.22577 0.96879 0.81277 0.97870 0.88525 1.45653 1.16769 1.09050 1.63215 1.17486 0.81919 0.86557 0.76881 1.90767 1.50380 1.55441 1.48694 1.21405 0.97231 0.94506 1.09665 1.22050 0.96184 0.81344 1.01796 1.21138 0.85690 0.98807 0.88274 1.86044 1.30412 1.70935 1.36282 1.19187 0.86057 0.92852 0.93918 1.21407 1.00970 1.05286 0.94814 1.21044 0.92962 0.95763 0.99735 1.20269 0.98025 1.03427 0.94034 1.25147 0.83147 0.96176 1.14107 1.86566 1.43121 1.34922 1.71067 0.94049 0.84966 0.82101 0.72126 1.20966 0.95275 0.94997 0.96223 1.20635 0.94621 1.03465 0.99396 1.83793 1.37339 1.23021 1.63231 1.24919 0.82224 1.02363 0.98295 1.23262 1.02787 0.89583 1.05857 1.23543 0.97680 0.99300 0.97090 0.91993 0.93091 0.91746 0.92063 0.93472 0.75450 0.89681 0.86990 0.74664 0.88319 0.87390 0.83602 0.83490 0.85801 0.76533 1.22992 1.20640 0.84122 0.84845 0.73198 0.79010 0.88755 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 9.08 71.98 0.65 0.83 16 2 C -0.08 0.13 1.19 -51.65 -0.06 0.07 16 3 C 0.09 -0.10 6.40 71.98 0.46 0.37 16 4 O -0.59 -0.72 12.64 -148.98 -1.88 -2.60 16 5 C -0.12 0.56 6.98 31.12 0.22 0.78 16 6 C 0.12 0.00 3.89 45.52 0.18 0.18 16 7 H 0.10 0.44 6.98 -2.39 -0.02 0.42 16 8 N -0.70 0.27 5.35 -443.35 -2.37 -2.10 16 9 C 0.58 3.73 7.81 86.65 0.68 4.41 16 10 O -0.57 -7.68 14.45 -4.07 -0.06 -7.73 16 11 C -0.22 -0.87 6.31 -18.99 -0.12 -0.99 16 12 C 0.04 0.22 7.00 25.26 0.18 0.39 16 13 C 0.14 0.73 4.74 71.24 0.34 1.06 16 14 O -0.32 -3.10 10.12 -92.28 -0.93 -4.04 16 15 C 0.12 0.97 6.69 22.51 0.15 1.12 16 16 C -0.21 -0.85 9.04 22.37 0.20 -0.65 16 17 C -0.08 -0.16 8.66 22.25 0.19 0.03 16 18 C -0.16 -0.44 5.35 -19.85 -0.11 -0.55 16 19 C -0.08 -0.09 2.80 71.24 0.20 0.11 16 20 O -0.55 -2.21 12.83 -148.98 -1.91 -4.13 16 21 Si 0.76 -0.37 29.88 68.60 2.05 1.68 16 22 C -0.06 -0.25 9.68 22.25 0.22 -0.03 16 23 C -0.16 -1.08 9.99 22.37 0.22 -0.86 16 24 O -0.18 -0.52 10.52 4.45 0.05 -0.47 16 25 C -0.01 0.05 12.03 66.89 0.80 0.86 16 26 C -0.20 0.72 10.60 23.65 0.25 0.97 16 27 C -0.14 -0.05 6.99 31.12 0.22 0.17 16 28 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.05 0.14 7.32 -2.38 -0.02 0.12 16 30 H 0.06 -0.21 7.94 -2.38 -0.02 -0.23 16 31 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 32 H 0.05 -0.04 7.35 -2.39 -0.02 -0.06 16 33 H 0.40 -2.66 9.12 -74.06 -0.68 -3.33 16 34 H 0.08 -0.46 8.10 -2.39 -0.02 -0.48 16 35 H 0.11 -0.92 8.08 -2.39 -0.02 -0.94 16 36 H 0.42 -2.75 7.90 -92.70 -0.73 -3.49 16 37 H 0.10 0.07 7.65 -2.39 -0.02 0.06 16 38 H 0.11 0.69 6.02 -2.39 -0.01 0.68 16 39 H 0.15 0.04 6.30 -2.91 -0.02 0.02 16 40 H 0.15 -0.33 4.83 -2.91 -0.01 -0.35 16 41 H 0.12 -0.05 7.96 -2.38 -0.02 -0.07 16 42 H 0.39 -0.57 8.70 -74.06 -0.64 -1.21 16 43 H -0.30 -2.11 7.11 99.48 0.71 -1.41 16 44 H -0.28 -0.75 7.00 99.48 0.70 -0.05 16 45 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 46 H 0.13 0.72 8.06 -2.91 -0.02 0.69 16 47 H 0.25 -3.36 8.06 -2.91 -0.02 -3.38 16 48 H 0.19 -2.12 7.74 -2.91 -0.02 -2.14 16 49 H 0.09 -0.12 7.96 -2.38 -0.02 -0.14 16 50 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 Total: 0.00 -25.10 413.64 -1.21 -26.31 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: -1.01 Total: -15.18 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.87 Total: 8.26 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -2.37 Total: -2.10 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -4.74 Total: -18.97 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: 2.05 Total: 1.68 kcal Total: -25.10 -1.21 -26.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.249 kcal (2) G-P(sol) polarization free energy of solvation -25.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds