Wall clock time and date at job start Tue Mar 9 2021 13:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 112.90938 * 2 1 4 4 O 1.42903 * 109.47127 * 48.74836 * 3 2 1 5 5 C 1.53962 * 113.66529 * 131.30042 * 2 1 3 6 6 C 1.53782 * 87.11063 * 139.88900 * 5 2 1 7 7 H 1.08997 * 113.61225 * 89.18406 * 6 5 2 8 8 N 1.46499 * 113.61191 * 220.09091 * 6 5 2 9 9 C 1.34783 * 119.99531 * 252.49880 * 8 6 5 10 10 O 1.21278 * 120.00062 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99755 * 180.02562 * 9 8 6 12 12 O 1.42895 * 109.47034 * 179.97438 * 11 9 8 13 13 C 1.35901 * 116.99884 * 180.02562 * 12 11 9 14 14 C 1.38718 * 120.05505 * 179.71935 * 13 12 11 15 15 N 1.48004 * 120.02618 * 0.02626 * 14 13 12 16 16 O 1.21798 * 119.99770 * 179.97438 * 15 14 13 17 17 O 1.21795 * 120.00271 * 359.97438 * 15 14 13 18 18 C 1.38163 * 119.94222 * 179.74539 * 14 13 12 19 19 C 1.38243 * 120.05716 * 0.53507 * 18 14 13 20 20 C 1.50698 * 119.94481 * 179.72480 * 19 18 14 21 21 O 1.42901 * 109.47027 * 300.01721 * 20 19 18 22 22 Si 1.86302 * 109.47165 * 180.02562 * 20 19 18 23 23 C 1.38288 * 120.11012 * 359.74440 * 19 18 14 24 24 C 1.38121 * 120.05562 * 359.97415 * 23 19 18 25 25 C 1.53781 * 87.08260 * 334.63747 * 6 5 2 26 26 H 1.09004 * 109.47331 * 191.25007 * 1 2 3 27 27 H 1.08994 * 109.47141 * 311.25254 * 1 2 3 28 28 H 1.09001 * 109.47183 * 71.25383 * 1 2 3 29 29 H 1.09003 * 109.47185 * 168.74946 * 3 2 1 30 30 H 1.08999 * 109.47292 * 288.74754 * 3 2 1 31 31 H 0.96695 * 113.99825 * 180.02562 * 4 3 2 32 32 H 1.08997 * 113.53543 * 25.33574 * 5 2 1 33 33 H 1.08998 * 113.73879 * 254.47172 * 5 2 1 34 34 H 0.96997 * 120.00777 * 72.49903 * 8 6 5 35 35 H 1.08994 * 109.47288 * 300.00303 * 11 9 8 36 36 H 1.09007 * 109.46858 * 60.00059 * 11 9 8 37 37 H 1.08004 * 119.97323 * 180.27910 * 18 14 13 38 38 H 1.08996 * 109.47352 * 60.01836 * 20 19 18 39 39 H 0.96697 * 114.00141 * 179.97438 * 21 20 19 40 40 H 1.48494 * 110.00186 * 59.99481 * 22 20 19 41 41 H 1.48502 * 109.99872 * 181.31846 * 22 20 19 42 42 H 1.08003 * 119.97098 * 180.02562 * 23 19 18 43 43 H 1.07997 * 120.03016 * 180.02562 * 24 23 19 44 44 H 1.09002 * 113.61445 * 139.98212 * 25 6 5 45 45 H 1.09002 * 113.61408 * 270.79943 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4092 0.0000 4 8 1.4927 2.1938 1.0129 5 6 2.1480 -0.9307 1.0594 6 6 3.1927 -1.3160 -0.0012 7 1 4.0724 -0.6724 -0.0016 8 7 3.5292 -2.7419 -0.0026 9 6 4.7243 -3.1526 0.4661 10 8 5.5212 -2.3419 0.8885 11 6 5.0707 -4.6193 0.4642 12 8 6.3809 -4.8000 1.0050 13 6 6.8495 -6.0738 1.0744 14 6 8.1160 -6.3214 1.5832 15 7 8.9585 -5.1983 2.0518 16 8 10.0702 -5.4164 2.4989 17 8 8.5400 -4.0562 1.9904 18 6 8.5880 -7.6177 1.6575 19 6 7.8037 -8.6666 1.2151 20 6 8.3235 -10.0790 1.2916 21 8 9.5187 -10.1894 0.5161 22 14 7.0389 -11.2507 0.6223 23 6 6.5430 -8.4219 0.7021 24 6 6.0643 -7.1282 0.6310 25 6 2.1460 -0.9292 -1.0593 26 1 -0.3634 -1.0079 0.2005 27 1 -0.3633 0.6776 0.7726 28 1 -0.3633 0.3303 -0.9732 29 1 3.1954 1.3516 0.2005 30 1 1.9628 1.8725 -0.9731 31 1 1.8213 3.1014 1.0700 32 1 1.4955 -1.7543 1.3490 33 1 2.5688 -0.4030 1.9153 34 1 2.8920 -3.3903 -0.3408 35 1 4.3481 -5.1641 1.0718 36 1 5.0445 -4.9975 -0.5578 37 1 9.5723 -7.8115 2.0578 38 1 8.5394 -10.3310 2.3298 39 1 9.9099 -11.0737 0.5201 40 1 6.7357 -10.9176 -0.7927 41 1 7.5267 -12.6498 0.7216 42 1 5.9320 -9.2430 0.3574 43 1 5.0795 -6.9376 0.2306 44 1 2.5650 -0.3989 -1.9146 45 1 1.4939 -1.7528 -1.3500 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:46 Heat of formation + Delta-G solvation = -96.120005 kcal Electronic energy + Delta-G solvation = -31024.942670 eV Core-core repulsion = 26400.201344 eV Total energy + Delta-G solvation = -4624.741326 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.30320 -41.84182 -41.32233 -40.14901 -39.20745 -37.63713 -37.51619 -37.17858 -34.89772 -33.52044 -32.35987 -30.94614 -29.29755 -27.82707 -27.36651 -26.76011 -26.53275 -24.31201 -23.15347 -22.58659 -21.71540 -20.45958 -19.79290 -19.48233 -19.11157 -18.72442 -18.58945 -18.38311 -18.27679 -17.59629 -17.49461 -17.06198 -16.49820 -16.17297 -15.98753 -15.84601 -15.63634 -15.52976 -15.11983 -14.48325 -14.35757 -14.20241 -14.13214 -13.85689 -13.75044 -13.58488 -13.20732 -13.15924 -12.98678 -12.73848 -12.71196 -12.64356 -12.34424 -12.28143 -12.13543 -11.91048 -11.80871 -11.49495 -11.26972 -10.99974 -10.83267 -10.79733 -10.61620 -10.10873 -9.77117 -4.92880 -1.31375 -0.24066 0.15476 0.34585 1.21799 1.26403 1.43967 1.63421 1.98027 2.02718 2.34887 3.06088 3.13111 3.22323 3.30368 3.40054 3.53673 3.60096 3.64316 3.70288 3.76165 3.86726 3.95157 4.02415 4.03482 4.20796 4.23724 4.32655 4.41345 4.51501 4.53384 4.60647 4.62286 4.75708 4.81828 4.85646 4.85970 4.90541 5.05713 5.07240 5.16784 5.18554 5.25082 5.43285 5.52819 5.75955 6.42042 6.46478 6.53006 6.84645 7.16308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C 0.091 3.909 4 O -0.589 6.589 5 C -0.139 4.139 6 C 0.118 3.882 7 H 0.089 0.911 8 N -0.696 5.696 9 C 0.507 3.493 10 O -0.568 6.568 11 C 0.024 3.976 12 O -0.292 6.292 13 C 0.193 3.807 14 C -0.105 4.105 15 N 0.035 4.965 16 O -0.201 6.201 17 O -0.174 6.174 18 C -0.005 4.005 19 C -0.112 4.112 20 C -0.095 4.095 21 O -0.562 6.562 22 Si 0.787 3.213 23 C -0.006 4.006 24 C -0.188 4.188 25 C -0.115 4.115 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.395 0.605 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.424 0.576 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.399 0.601 40 H -0.280 1.280 41 H -0.292 1.292 42 H 0.187 0.813 43 H 0.209 0.791 44 H 0.083 0.917 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -9.196 -4.900 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.087 4.087 3 C 0.013 3.987 4 O -0.398 6.398 5 C -0.178 4.178 6 C 0.013 3.987 7 H 0.107 0.893 8 N -0.350 5.350 9 C 0.293 3.707 10 O -0.446 6.446 11 C -0.053 4.053 12 O -0.202 6.202 13 C 0.143 3.857 14 C -0.191 4.191 15 N 0.545 4.455 16 O -0.409 6.409 17 O -0.388 6.388 18 C -0.024 4.024 19 C -0.114 4.114 20 C -0.202 4.202 21 O -0.373 6.373 22 Si 0.689 3.311 23 C -0.024 4.024 24 C -0.206 4.206 25 C -0.153 4.153 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.245 0.755 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.263 0.737 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.117 0.883 39 H 0.250 0.750 40 H -0.206 1.206 41 H -0.219 1.219 42 H 0.204 0.796 43 H 0.226 0.774 44 H 0.102 0.898 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.240 -9.453 -5.347 16.364 hybrid contribution 2.266 0.749 0.072 2.388 sum -9.974 -8.704 -5.274 14.250 Atomic orbital electron populations 1.21552 0.92629 1.02208 1.01963 1.21648 0.96735 0.92758 0.97533 1.22026 0.94991 0.90673 0.91020 1.86414 1.66431 1.28875 1.58038 1.23604 0.97782 0.99495 0.96925 1.22505 0.96660 0.81634 0.97907 0.89329 1.45616 1.16678 1.08938 1.63797 1.20594 0.82148 0.90603 0.77361 1.90843 1.50344 1.56636 1.46758 1.23151 0.83276 0.94567 1.04288 1.86471 1.33971 1.22759 1.76984 1.18952 0.89798 0.85939 0.90980 1.20852 0.93000 0.87315 1.17914 1.43869 1.00879 1.02850 0.97891 1.94492 1.07029 1.91055 1.48332 1.94677 1.76640 1.07407 1.60064 1.20832 1.00653 0.87830 0.93054 1.19471 0.95267 0.94130 1.02487 1.25244 0.95624 0.98411 1.00883 1.86544 1.40358 1.37730 1.72672 0.94226 0.82621 0.73817 0.80392 1.21669 0.93302 0.97902 0.89481 1.21795 1.03121 0.89986 1.05692 1.23407 0.96294 0.99499 0.96108 0.91304 0.93392 0.91973 0.93869 0.92030 0.75523 0.88031 0.93282 0.73696 0.83522 0.83870 0.83130 0.88303 0.74961 1.20624 1.21881 0.79587 0.77427 0.89829 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.32 9.09 71.98 0.65 0.97 16 2 C -0.09 0.21 1.20 -51.59 -0.06 0.15 16 3 C 0.09 -0.05 6.40 71.98 0.46 0.41 16 4 O -0.59 -1.23 12.64 -148.98 -1.88 -3.12 16 5 C -0.14 0.10 7.00 31.18 0.22 0.32 16 6 C 0.12 -0.22 3.89 45.52 0.18 -0.04 16 7 H 0.09 0.41 6.99 -2.39 -0.02 0.39 16 8 N -0.70 4.07 5.35 -440.03 -2.36 1.71 16 9 C 0.51 0.88 7.91 87.66 0.69 1.57 16 10 O -0.57 -9.06 16.10 16.01 0.26 -8.80 16 11 C 0.02 -0.16 5.22 71.24 0.37 0.21 16 12 O -0.29 -1.60 7.68 -63.41 -0.49 -2.09 16 13 C 0.19 0.38 6.67 22.51 0.15 0.53 16 14 C -0.11 -0.91 6.87 36.48 0.25 -0.66 16 15 N 0.04 0.63 4.45 -46.24 -0.21 0.42 16 16 O -0.20 -3.95 18.45 18.89 0.35 -3.60 16 17 O -0.17 -3.98 17.24 25.62 0.44 -3.54 16 18 C 0.00 -0.02 9.11 22.25 0.20 0.19 16 19 C -0.11 0.37 5.42 -19.85 -0.11 0.26 16 20 C -0.09 0.58 2.81 71.24 0.20 0.78 16 21 O -0.56 0.89 12.74 -148.98 -1.90 -1.01 16 22 Si 0.79 -7.87 29.78 68.60 2.04 -5.82 16 23 C -0.01 0.06 8.66 22.25 0.19 0.25 16 24 C -0.19 1.75 9.04 22.36 0.20 1.95 16 25 C -0.12 0.80 6.98 31.12 0.22 1.02 16 26 H 0.07 -0.36 7.95 -2.39 -0.02 -0.38 16 27 H 0.05 0.11 7.33 -2.39 -0.02 0.09 16 28 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.04 0.02 7.35 -2.39 -0.02 0.00 16 30 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.40 -2.20 9.12 -74.06 -0.68 -2.87 16 32 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.05 0.25 8.10 -2.39 -0.02 0.23 16 34 H 0.42 -6.40 8.73 -92.71 -0.81 -7.20 16 35 H 0.15 -2.34 7.66 -2.39 -0.02 -2.36 16 36 H 0.14 -2.21 7.66 -2.38 -0.02 -2.23 16 37 H 0.15 0.77 7.61 -2.91 -0.02 0.75 16 38 H 0.10 -0.91 7.96 -2.39 -0.02 -0.93 16 39 H 0.40 -3.71 8.74 -74.06 -0.65 -4.36 16 40 H -0.28 1.39 7.11 99.48 0.71 2.10 16 41 H -0.29 1.11 7.11 99.48 0.71 1.81 16 42 H 0.19 -3.18 4.87 -2.91 -0.01 -3.19 16 43 H 0.21 -4.16 6.30 -2.91 -0.02 -4.18 16 44 H 0.08 -0.60 8.10 -2.39 -0.02 -0.62 16 45 H 0.12 -1.42 8.08 -2.39 -0.02 -1.44 16 Total: 0.00 -42.26 381.71 -0.93 -43.19 By element: Atomic # 1 Polarization: -24.24 SS G_CDS: -1.01 Total: -25.26 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.82 Total: 7.90 kcal Atomic # 7 Polarization: 4.70 SS G_CDS: -2.56 Total: 2.14 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -3.22 Total: -22.15 kcal Atomic # 14 Polarization: -7.87 SS G_CDS: 2.04 Total: -5.82 kcal Total: -42.26 -0.93 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.925 kcal (2) G-P(sol) polarization free energy of solvation -42.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds