Wall clock time and date at job start Tue Mar 9 2021 13:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 112.84979 * 2 1 4 4 O 1.42895 * 109.47347 * 48.80081 * 3 2 1 5 5 C 1.53960 * 113.66700 * 131.24289 * 2 1 3 6 6 C 1.53778 * 87.02020 * 139.93026 * 5 2 1 7 7 H 1.09004 * 113.60998 * 89.22916 * 6 5 2 8 8 N 1.46494 * 113.61798 * 220.04626 * 6 5 2 9 9 C 1.34773 * 120.00256 * 254.14391 * 8 6 5 10 10 O 1.21286 * 119.99990 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00297 * 179.97438 * 9 8 6 12 12 N 1.46493 * 109.47232 * 179.97438 * 11 9 8 13 13 C 1.36834 * 125.06814 * 265.02256 * 12 11 9 14 14 C 1.34232 * 109.94463 * 180.02562 * 13 12 11 15 15 C 1.50702 * 126.50124 * 179.97438 * 14 13 12 16 16 O 1.42892 * 109.47242 * 255.02697 * 15 14 13 17 17 Si 1.86298 * 109.46915 * 15.03236 * 15 14 13 18 18 C 1.46489 * 106.99638 * 0.24380 * 14 13 12 19 19 C 1.39597 * 134.03661 * 180.42368 * 18 14 13 20 20 C 1.36658 * 119.76274 * 179.61173 * 19 18 14 21 21 C 1.38782 * 120.53363 * 359.76114 * 20 19 18 22 22 C 1.37789 * 120.66341 * 359.97438 * 21 20 19 23 23 C 1.37700 * 125.06531 * 85.02480 * 12 11 9 24 24 C 1.53781 * 113.61377 * 228.80097 * 2 1 3 25 25 H 1.09001 * 109.47282 * 191.20179 * 1 2 3 26 26 H 1.09000 * 109.47432 * 311.19330 * 1 2 3 27 27 H 1.08997 * 109.47343 * 71.20145 * 1 2 3 28 28 H 1.08997 * 109.47275 * 168.80748 * 3 2 1 29 29 H 1.09002 * 109.46878 * 288.80147 * 3 2 1 30 30 H 0.96700 * 114.00172 * 180.02562 * 4 3 2 31 31 H 1.09004 * 113.61180 * 25.41224 * 5 2 1 32 32 H 1.09001 * 113.66673 * 254.46110 * 5 2 1 33 33 H 0.96996 * 119.99799 * 74.13722 * 8 6 5 34 34 H 1.09003 * 109.47134 * 59.99175 * 11 9 8 35 35 H 1.08997 * 109.46849 * 299.99421 * 11 9 8 36 36 H 1.08008 * 125.02431 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.46724 * 135.02743 * 15 14 13 38 38 H 0.96703 * 114.00176 * 180.02562 * 16 15 14 39 39 H 1.48506 * 109.99834 * 178.68053 * 17 15 14 40 40 H 1.48502 * 110.00011 * 299.99318 * 17 15 14 41 41 H 1.07999 * 120.11383 * 359.35094 * 19 18 14 42 42 H 1.08004 * 119.73039 * 179.74489 * 20 19 18 43 43 H 1.08003 * 119.66864 * 180.02562 * 21 20 19 44 44 H 1.08006 * 120.11103 * 179.97438 * 22 21 20 45 45 H 1.09004 * 113.61539 * 105.47016 * 24 2 1 46 46 H 1.09001 * 113.68869 * 334.57879 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 8 1.4913 2.1935 1.0137 5 6 2.1480 -0.9296 1.0603 6 6 3.1923 -1.3137 -0.0012 7 1 4.0717 -0.6696 -0.0015 8 7 3.5310 -2.7389 -0.0025 9 6 4.7136 -3.1510 0.4955 10 8 5.4976 -2.3418 0.9445 11 6 5.0619 -4.6172 0.4947 12 7 6.3901 -4.8040 1.0837 13 6 7.5586 -4.8896 0.3769 14 6 8.5909 -5.0600 1.2177 15 6 10.0427 -5.1991 0.8382 16 8 10.4411 -6.5649 0.9713 17 14 10.2781 -4.6527 -0.9272 18 6 8.0379 -5.0916 2.5739 19 6 8.5952 -5.2317 3.8461 20 6 7.7860 -5.2123 4.9471 21 6 6.4144 -5.0493 4.8113 22 6 5.8440 -4.9038 3.5655 23 6 6.6487 -4.9197 2.4312 24 6 2.1460 -0.9281 -1.0602 25 1 -0.3634 -1.0081 0.1996 26 1 -0.3634 0.6768 0.7733 27 1 -0.3634 0.3311 -0.9728 28 1 3.1942 1.3533 0.1995 29 1 1.9600 1.8733 -0.9729 30 1 1.8191 3.1014 1.0709 31 1 1.4970 -1.7543 1.3507 32 1 2.5686 -0.3998 1.9150 33 1 2.9042 -3.3860 -0.3618 34 1 5.0633 -4.9897 -0.5297 35 1 4.3241 -5.1662 1.0798 36 1 7.6384 -4.8290 -0.6986 37 1 10.6511 -4.5775 1.4951 38 1 11.3664 -6.7288 0.7432 39 1 11.7110 -4.7550 -1.3038 40 1 9.4538 -5.4925 -1.8331 41 1 9.6616 -5.3593 3.9594 42 1 8.2172 -5.3249 5.9309 43 1 5.7880 -5.0356 5.6910 44 1 4.7756 -4.7779 3.4701 45 1 2.5650 -0.3971 -1.9150 46 1 1.4954 -1.7527 -1.3516 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:33 Heat of formation + Delta-G solvation = -21.500175 kcal Electronic energy + Delta-G solvation = -28299.698577 eV Core-core repulsion = 24350.475826 eV Total energy + Delta-G solvation = -3949.222751 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54431 -41.40337 -39.92315 -38.09851 -37.72348 -37.17338 -34.87492 -34.13839 -31.57326 -30.45930 -30.26833 -28.80039 -27.36733 -26.77251 -25.78896 -23.91223 -23.25753 -22.37503 -21.62486 -20.55562 -19.48686 -18.54096 -18.42245 -18.29894 -18.16577 -17.70852 -17.13338 -16.44827 -16.30522 -16.17658 -15.92773 -15.64733 -15.47435 -14.94607 -14.84981 -14.74585 -14.49344 -14.38644 -14.19684 -14.12190 -13.61866 -13.52992 -13.32223 -13.21843 -13.00408 -12.76012 -12.61118 -12.56165 -12.50089 -12.09259 -11.82280 -11.73252 -11.49764 -11.27797 -11.09626 -10.80833 -10.54697 -10.34976 -10.08314 -9.17036 -8.64388 -4.88224 0.13025 0.63264 1.32683 1.42175 1.45702 1.59762 1.62654 1.93046 2.24067 2.93625 3.13105 3.39391 3.51854 3.58942 3.62401 3.71710 3.74323 3.78605 3.85389 4.00714 4.02727 4.12700 4.20207 4.22012 4.26532 4.40177 4.41155 4.53473 4.55974 4.60136 4.69827 4.74711 4.77940 4.81212 4.85331 4.88445 4.89127 5.05211 5.12993 5.15415 5.25392 5.42335 5.50073 5.53006 5.64866 5.72029 5.74458 6.16939 6.22942 6.49426 6.67713 6.85745 7.15408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C 0.092 3.908 4 O -0.590 6.590 5 C -0.140 4.140 6 C 0.121 3.879 7 H 0.092 0.908 8 N -0.701 5.701 9 C 0.493 3.507 10 O -0.568 6.568 11 C 0.087 3.913 12 N -0.467 5.467 13 C 0.073 3.927 14 C -0.180 4.180 15 C -0.053 4.053 16 O -0.560 6.560 17 Si 0.762 3.238 18 C -0.118 4.118 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.135 4.135 23 C 0.091 3.909 24 C -0.116 4.116 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.421 0.579 34 H 0.161 0.839 35 H 0.142 0.858 36 H 0.194 0.806 37 H 0.073 0.927 38 H 0.390 0.610 39 H -0.283 1.283 40 H -0.277 1.277 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 0.923 -5.355 7.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C 0.014 3.986 4 O -0.398 6.398 5 C -0.179 4.179 6 C 0.016 3.984 7 H 0.110 0.890 8 N -0.354 5.354 9 C 0.278 3.722 10 O -0.446 6.446 11 C -0.038 4.038 12 N -0.149 5.149 13 C -0.053 4.053 14 C -0.188 4.188 15 C -0.161 4.161 16 O -0.369 6.369 17 Si 0.664 3.336 18 C -0.123 4.123 19 C -0.105 4.105 20 C -0.172 4.172 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.014 4.014 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.259 0.741 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.210 0.790 37 H 0.091 0.909 38 H 0.239 0.761 39 H -0.209 1.209 40 H -0.203 1.203 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.104 0.896 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.007 0.693 -5.720 7.633 hybrid contribution 1.024 -0.443 0.519 1.230 sum -3.983 0.251 -5.201 6.555 Atomic orbital electron populations 1.21560 0.92948 1.02011 1.01966 1.21650 0.96539 0.92924 0.97473 1.22014 0.95044 0.90493 0.91030 1.86419 1.66535 1.28878 1.57967 1.23580 0.97938 0.99351 0.97009 1.22471 0.96556 0.81897 0.97462 0.88986 1.45807 1.18407 1.08915 1.62244 1.21391 0.81835 0.91695 0.77238 1.90794 1.50657 1.56442 1.46748 1.21987 0.83649 0.93326 1.04815 1.43420 1.06480 1.61277 1.03758 1.21926 0.83548 1.01659 0.98134 1.19762 0.94099 1.13473 0.91418 1.24363 0.92746 0.85646 1.13384 1.86590 1.33628 1.26232 1.90494 0.94096 0.78720 0.88937 0.71825 1.19371 0.92730 1.06208 0.93948 1.20457 1.00087 0.99167 0.90833 1.20928 0.94012 1.03275 0.98978 1.21141 0.95328 0.99180 0.96931 1.20249 0.99361 1.05683 0.90215 1.18408 0.94528 1.03688 0.84790 1.23388 0.96399 0.99409 0.96223 0.91672 0.93360 0.91960 0.93637 0.91987 0.75495 0.88656 0.93287 0.74108 0.82194 0.84020 0.78970 0.90905 0.76074 1.20928 1.20341 0.86016 0.84315 0.83596 0.85005 0.89571 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.27 9.08 71.98 0.65 0.92 16 2 C -0.09 0.23 1.19 -51.60 -0.06 0.17 16 3 C 0.09 -0.14 6.39 71.98 0.46 0.32 16 4 O -0.59 -0.74 12.64 -148.98 -1.88 -2.62 16 5 C -0.14 0.12 7.01 31.18 0.22 0.34 16 6 C 0.12 -0.35 3.86 45.52 0.18 -0.17 16 7 H 0.09 0.22 7.02 -2.38 -0.02 0.21 16 8 N -0.70 4.29 5.36 -440.04 -2.36 1.93 16 9 C 0.49 -0.01 7.90 87.66 0.69 0.69 16 10 O -0.57 -6.43 16.04 -3.05 -0.05 -6.48 16 11 C 0.09 -0.44 6.48 85.64 0.56 0.11 16 12 N -0.47 -2.03 2.27 -520.00 -1.18 -3.21 16 13 C 0.07 0.35 9.89 83.00 0.82 1.17 16 14 C -0.18 -1.60 5.61 -18.63 -0.10 -1.70 16 15 C -0.05 -0.26 3.05 71.24 0.22 -0.04 16 16 O -0.56 -3.84 12.86 -148.98 -1.92 -5.76 16 17 Si 0.76 0.16 30.79 68.60 2.11 2.27 16 18 C -0.12 -1.43 6.35 -20.20 -0.13 -1.56 16 19 C -0.09 -0.92 10.05 22.23 0.22 -0.69 16 20 C -0.15 -1.14 9.97 22.03 0.22 -0.92 16 21 C -0.11 -0.65 10.01 22.29 0.22 -0.43 16 22 C -0.13 -0.94 10.00 22.37 0.22 -0.72 16 23 C 0.09 0.86 6.80 39.03 0.27 1.13 16 24 C -0.12 0.84 6.98 31.12 0.22 1.06 16 25 H 0.06 -0.27 7.95 -2.39 -0.02 -0.29 16 26 H 0.05 0.12 7.32 -2.39 -0.02 0.10 16 27 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.05 -0.06 7.35 -2.39 -0.02 -0.07 16 29 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.40 -2.60 9.12 -74.06 -0.68 -3.27 16 31 H 0.09 -0.27 7.97 -2.38 -0.02 -0.29 16 32 H 0.05 0.23 8.10 -2.39 -0.02 0.21 16 33 H 0.42 -5.72 8.71 -92.71 -0.81 -6.53 16 34 H 0.16 -2.07 8.12 -2.39 -0.02 -2.09 16 35 H 0.14 -1.41 8.14 -2.39 -0.02 -1.43 16 36 H 0.19 -0.31 6.30 -2.91 -0.02 -0.33 16 37 H 0.07 0.25 7.96 -2.39 -0.02 0.23 16 38 H 0.39 -0.69 8.74 -74.06 -0.65 -1.33 16 39 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 40 H -0.28 -1.06 7.04 99.48 0.70 -0.36 16 41 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 44 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 45 H 0.09 -0.69 8.10 -2.39 -0.02 -0.71 16 46 H 0.11 -1.27 8.07 -2.39 -0.02 -1.29 16 Total: 0.00 -29.12 382.23 -1.48 -30.60 By element: Atomic # 1 Polarization: -15.32 SS G_CDS: -1.08 Total: -16.40 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.87 Total: -0.32 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -3.54 Total: -1.29 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -3.85 Total: -14.86 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: 2.11 Total: 2.27 kcal Total: -29.12 -1.48 -30.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.096 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds