Wall clock time and date at job start Tue Mar 9 2021 13:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86303 * 109.47313 * 2 1 4 4 C 1.86299 * 109.47164 * 240.00185 * 2 1 3 5 5 C 1.86307 * 109.47328 * 120.00077 * 2 1 3 6 6 S 1.81399 * 109.46856 * 59.04866 * 5 2 1 7 7 C 1.81401 * 103.00092 * 184.42438 * 6 5 2 8 8 C 1.52999 * 109.47260 * 175.57782 * 7 6 5 9 9 C 1.53004 * 109.46771 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46831 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99949 * 180.02562 * 10 9 8 12 12 O 1.21573 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.47694 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.39624 * 120.15369 * 0.02562 * 13 11 10 15 15 C 1.38110 * 119.84912 * 180.02562 * 14 13 11 16 16 F 1.35100 * 119.91366 * 180.02562 * 15 14 13 17 17 C 1.38607 * 120.16914 * 0.02562 * 15 14 13 18 18 C 1.50703 * 119.84516 * 179.97438 * 17 15 14 19 19 O 1.42892 * 109.47150 * 284.99986 * 18 17 15 20 20 Si 1.86302 * 109.47264 * 164.99753 * 18 17 15 21 21 H 1.48506 * 109.46950 * 59.99912 * 20 18 17 22 22 H 1.48496 * 109.46969 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47042 * 300.00165 * 20 18 17 24 24 C 1.38231 * 120.31412 * 0.02562 * 17 15 14 25 25 C 1.38269 * 120.14759 * 0.02562 * 24 17 15 26 26 F 1.35099 * 120.08798 * 179.97438 * 25 24 17 27 27 H 1.09004 * 109.47474 * 299.99525 * 1 2 3 28 28 H 1.09000 * 109.47569 * 59.99615 * 1 2 3 29 29 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47036 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47117 * 300.00662 * 3 2 1 32 32 H 1.09004 * 109.46462 * 59.99856 * 3 2 1 33 33 H 1.09001 * 109.47075 * 297.55284 * 4 2 1 34 34 H 1.08999 * 109.47236 * 57.55583 * 4 2 1 35 35 H 1.09002 * 109.47053 * 177.55777 * 4 2 1 36 36 H 1.08998 * 109.47260 * 299.05193 * 5 2 1 37 37 H 1.08996 * 109.47104 * 179.04659 * 5 2 1 38 38 H 1.09003 * 109.46913 * 55.57124 * 7 6 5 39 39 H 1.09007 * 109.46823 * 295.57745 * 7 6 5 40 40 H 1.08994 * 109.47339 * 60.00292 * 8 7 6 41 41 H 1.08991 * 109.46912 * 299.99451 * 8 7 6 42 42 H 1.09007 * 109.46977 * 60.00400 * 9 8 7 43 43 H 1.08995 * 109.47658 * 299.99728 * 9 8 7 44 44 H 0.97001 * 119.99825 * 359.97438 * 10 9 8 45 45 H 1.07997 * 120.07492 * 0.30082 * 14 13 11 46 46 H 1.09007 * 109.46978 * 45.00022 * 18 17 15 47 47 H 0.96699 * 114.00207 * 179.97438 * 19 18 17 48 48 H 1.08002 * 119.92809 * 179.97438 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5212 6 16 1.8563 -2.5801 1.5353 7 6 2.4435 -3.2184 3.1286 8 6 1.8966 -4.6308 3.3450 9 6 2.3924 -5.1693 4.6886 10 7 1.8682 -6.5215 4.8961 11 6 2.1756 -7.1982 6.0204 12 8 2.8874 -6.6863 6.8626 13 6 1.6467 -8.5612 6.2300 14 6 0.8284 -9.1520 5.2651 15 6 0.3369 -10.4266 5.4677 16 9 -0.4545 -10.9998 4.5347 17 6 0.6534 -11.1194 6.6258 18 6 0.1126 -12.5097 6.8396 19 8 -1.2719 -12.4342 7.1849 20 14 1.0526 -13.3363 8.2194 21 1 0.8960 -12.5468 9.4674 22 1 0.5201 -14.7065 8.4297 23 1 2.4915 -13.4147 7.8605 24 6 1.4620 -10.5406 7.5860 25 6 1.9604 -9.2648 7.3971 26 9 2.7501 -8.7002 8.3366 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2702 0.8900 33 1 2.1569 -1.9177 -1.4995 34 1 2.0853 -0.3903 -2.4106 35 1 3.5731 -0.8404 -1.5433 36 1 2.1347 -0.3548 2.4111 37 1 3.5738 -0.8931 1.5126 38 1 2.0964 -2.5674 3.9310 39 1 3.5332 -3.2466 3.1293 40 1 2.2437 -5.2818 2.5427 41 1 0.8070 -4.6025 3.3443 42 1 2.0456 -4.5184 5.4912 43 1 3.4820 -5.1977 4.6889 44 1 1.2994 -6.9295 4.2246 45 1 0.5841 -8.6152 4.3604 46 1 0.2276 -13.0891 5.9235 47 1 -1.6868 -13.2944 7.3371 48 1 1.7044 -11.0859 8.4862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310320_12360598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:55 Heat of formation + Delta-G solvation = -182.395332 kcal Electronic energy + Delta-G solvation = -28539.987645 eV Core-core repulsion = 24094.385914 eV Total energy + Delta-G solvation = -4445.601731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.06989 -49.95893 -41.27200 -39.84750 -37.75100 -36.97185 -34.29577 -33.06936 -31.39295 -30.10807 -29.01237 -28.51567 -28.41028 -28.38290 -26.85690 -24.46798 -23.63566 -22.87290 -21.76817 -19.59204 -18.83068 -18.65809 -18.36892 -17.39470 -17.36677 -17.22789 -16.88134 -16.51440 -16.44288 -16.36565 -15.69629 -15.62656 -15.59462 -15.41310 -15.07064 -14.87396 -14.64903 -14.52998 -14.25506 -14.23664 -13.99305 -13.85502 -13.76650 -13.67615 -13.55854 -13.39912 -13.22966 -13.20077 -13.09974 -13.02719 -12.63155 -12.41022 -12.26824 -12.20286 -12.00600 -11.40454 -11.13803 -10.91031 -10.86199 -10.72718 -10.62613 -10.56817 -10.24858 -9.78862 -8.60643 -0.80395 -0.31966 0.55850 0.88493 1.27045 1.31587 1.36654 1.45204 1.67467 1.72650 1.79885 1.85128 1.96260 2.27198 2.51550 2.73504 2.83050 3.01516 3.26421 3.38115 3.58315 3.68265 3.70468 3.73850 3.87149 4.01917 4.16029 4.22068 4.26516 4.32044 4.40932 4.49923 4.59399 4.62359 4.63255 4.65476 4.66786 4.72029 4.75666 4.76830 4.79419 4.84304 4.84849 4.92510 5.19715 5.37397 5.38803 5.53774 5.57073 6.24053 6.35825 7.00066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.020 2.980 3 C -0.442 4.442 4 C -0.446 4.446 5 C -0.382 4.382 6 S -0.238 6.238 7 C -0.092 4.092 8 C -0.117 4.117 9 C 0.124 3.876 10 N -0.723 5.723 11 C 0.561 3.439 12 O -0.513 6.513 13 C -0.141 4.141 14 C -0.093 4.093 15 C 0.113 3.887 16 F -0.121 7.121 17 C -0.054 4.054 18 C -0.088 4.088 19 O -0.539 6.539 20 Si 0.943 3.057 21 H -0.242 1.242 22 H -0.246 1.246 23 H -0.242 1.242 24 C -0.140 4.140 25 C 0.161 3.839 26 F -0.104 7.104 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.402 0.598 45 H 0.153 0.847 46 H 0.087 0.913 47 H 0.387 0.613 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -1.386 -2.963 3.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.215 2.785 3 C -0.552 4.552 4 C -0.554 4.554 5 C -0.575 4.575 6 S -0.012 6.012 7 C -0.241 4.241 8 C -0.156 4.156 9 C -0.001 4.001 10 N -0.377 5.377 11 C 0.347 3.653 12 O -0.389 6.389 13 C -0.146 4.146 14 C -0.113 4.113 15 C 0.093 3.907 16 F -0.099 7.099 17 C -0.055 4.055 18 C -0.198 4.198 19 O -0.346 6.346 20 Si 0.764 3.236 21 H -0.166 1.166 22 H -0.170 1.170 23 H -0.165 1.165 24 C -0.158 4.158 25 C 0.140 3.860 26 F -0.082 7.082 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.238 0.762 45 H 0.170 0.830 46 H 0.104 0.896 47 H 0.235 0.765 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.578 -1.286 -2.478 2.851 hybrid contribution 0.120 0.055 0.391 0.412 sum -0.459 -1.231 -2.088 2.466 Atomic orbital electron populations 1.26076 1.19938 1.04995 1.04332 0.78810 0.67743 0.67159 0.64773 1.26047 1.06312 1.17959 1.04840 1.26081 1.06169 1.08518 1.14659 1.28056 1.08995 1.00126 1.20317 1.86784 1.74199 1.13611 1.26584 1.23333 1.03727 0.99022 0.98003 1.21523 1.02249 0.94842 0.97005 1.21395 0.99559 0.82078 0.97068 1.45817 1.53068 1.17387 1.21398 1.17798 0.80869 0.84562 0.82120 1.90897 1.36286 1.68798 1.42924 1.19843 1.03068 0.96159 0.95497 1.21162 0.96561 0.93867 0.99672 1.17163 0.93917 0.91784 0.87794 1.91571 1.71051 1.84190 1.63074 1.19332 0.97175 0.96091 0.92950 1.24729 0.89409 0.96586 1.09037 1.86503 1.20711 1.35063 1.92283 0.85772 0.79951 0.79757 0.78164 1.16553 1.16982 1.16527 1.20990 0.99741 0.94447 1.00634 1.17428 0.91353 0.90976 0.86253 1.91652 1.70170 1.84389 1.62024 0.91273 0.91168 0.90554 0.91100 0.90644 0.91104 0.90621 0.91117 0.91263 0.88631 0.88700 0.89735 0.89737 0.90049 0.89962 0.90734 0.90715 0.76241 0.82955 0.89551 0.76513 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.54 8.65 101.05 0.87 1.41 16 2 Si 1.02 -2.63 12.30 -169.99 -2.09 -4.72 16 3 C -0.44 0.92 8.65 101.05 0.87 1.79 16 4 C -0.45 0.53 8.65 101.05 0.87 1.40 16 5 C -0.38 0.63 5.14 101.05 0.52 1.15 16 6 S -0.24 0.03 20.84 -107.50 -2.24 -2.21 16 7 C -0.09 0.14 5.94 37.16 0.22 0.36 16 8 C -0.12 0.28 5.34 -26.73 -0.14 0.14 16 9 C 0.12 -0.13 5.67 -4.04 -0.02 -0.15 16 10 N -0.72 0.59 5.51 -61.29 -0.34 0.26 16 11 C 0.56 1.39 7.77 -12.40 -0.10 1.29 16 12 O -0.51 -3.34 15.34 5.30 0.08 -3.26 16 13 C -0.14 -0.18 5.88 -104.92 -0.62 -0.79 16 14 C -0.09 0.09 9.52 -39.11 -0.37 -0.29 16 15 C 0.11 0.03 7.23 -39.49 -0.29 -0.25 16 16 F -0.12 -0.12 16.73 2.25 0.04 -0.08 16 17 C -0.05 -0.02 5.30 -104.49 -0.55 -0.57 16 18 C -0.09 0.12 2.43 36.01 0.09 0.21 16 19 O -0.54 0.42 12.86 -35.23 -0.45 -0.04 16 20 Si 0.94 -1.77 25.48 -169.99 -4.33 -6.10 16 21 H -0.24 0.19 6.72 56.52 0.38 0.57 16 22 H -0.25 0.46 7.11 56.52 0.40 0.86 16 23 H -0.24 0.30 7.11 56.52 0.40 0.71 16 24 C -0.14 -0.09 8.62 -39.57 -0.34 -0.43 16 25 C 0.16 0.37 7.28 -38.97 -0.28 0.08 16 26 F -0.10 -0.48 15.55 2.25 0.04 -0.44 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.09 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 38 H 0.08 -0.14 8.14 -51.92 -0.42 -0.57 16 39 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 40 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 41 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 42 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 43 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 44 H 0.40 -1.46 6.50 -40.82 -0.27 -1.72 16 45 H 0.15 -0.61 6.40 -52.49 -0.34 -0.95 16 46 H 0.09 -0.25 7.89 -51.92 -0.41 -0.66 16 47 H 0.39 -2.03 8.74 45.56 0.40 -1.63 16 48 H 0.15 -0.11 4.86 -52.49 -0.25 -0.37 16 LS Contribution 418.48 15.07 6.31 6.31 Total: 0.00 -8.18 418.48 -9.03 -17.21 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -6.77 Total: -12.27 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 0.74 Total: 5.34 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -0.34 Total: 0.26 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -0.37 Total: -3.30 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.07 Total: -0.52 kcal Atomic # 14 Polarization: -4.39 SS G_CDS: -6.42 Total: -10.82 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.24 Total: -2.21 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -8.18 -9.03 -17.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_12360598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.188 kcal (2) G-P(sol) polarization free energy of solvation -8.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds