Wall clock time and date at job start Tue Mar 9 2021 13:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86303 * 109.47313 * 2 1 4 4 C 1.86299 * 109.47164 * 240.00185 * 2 1 3 5 5 C 1.86307 * 109.47328 * 120.00077 * 2 1 3 6 6 S 1.81399 * 109.46856 * 59.04866 * 5 2 1 7 7 C 1.81401 * 103.00092 * 184.42438 * 6 5 2 8 8 C 1.52999 * 109.47260 * 175.57782 * 7 6 5 9 9 C 1.53004 * 109.46771 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46831 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99949 * 180.02562 * 10 9 8 12 12 O 1.21573 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.47694 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.39624 * 120.15369 * 0.02562 * 13 11 10 15 15 C 1.38110 * 119.84912 * 180.02562 * 14 13 11 16 16 F 1.35100 * 119.91366 * 180.02562 * 15 14 13 17 17 C 1.38607 * 120.16914 * 0.02562 * 15 14 13 18 18 C 1.50703 * 119.84516 * 179.97438 * 17 15 14 19 19 O 1.42892 * 109.47150 * 284.99986 * 18 17 15 20 20 Si 1.86302 * 109.47264 * 164.99753 * 18 17 15 21 21 H 1.48506 * 109.46950 * 59.99912 * 20 18 17 22 22 H 1.48496 * 109.46969 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47042 * 300.00165 * 20 18 17 24 24 C 1.38231 * 120.31412 * 0.02562 * 17 15 14 25 25 C 1.38269 * 120.14759 * 0.02562 * 24 17 15 26 26 F 1.35099 * 120.08798 * 179.97438 * 25 24 17 27 27 H 1.09004 * 109.47474 * 299.99525 * 1 2 3 28 28 H 1.09000 * 109.47569 * 59.99615 * 1 2 3 29 29 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47036 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47117 * 300.00662 * 3 2 1 32 32 H 1.09004 * 109.46462 * 59.99856 * 3 2 1 33 33 H 1.09001 * 109.47075 * 297.55284 * 4 2 1 34 34 H 1.08999 * 109.47236 * 57.55583 * 4 2 1 35 35 H 1.09002 * 109.47053 * 177.55777 * 4 2 1 36 36 H 1.08998 * 109.47260 * 299.05193 * 5 2 1 37 37 H 1.08996 * 109.47104 * 179.04659 * 5 2 1 38 38 H 1.09003 * 109.46913 * 55.57124 * 7 6 5 39 39 H 1.09007 * 109.46823 * 295.57745 * 7 6 5 40 40 H 1.08994 * 109.47339 * 60.00292 * 8 7 6 41 41 H 1.08991 * 109.46912 * 299.99451 * 8 7 6 42 42 H 1.09007 * 109.46977 * 60.00400 * 9 8 7 43 43 H 1.08995 * 109.47658 * 299.99728 * 9 8 7 44 44 H 0.97001 * 119.99825 * 359.97438 * 10 9 8 45 45 H 1.07997 * 120.07492 * 0.30082 * 14 13 11 46 46 H 1.09007 * 109.46978 * 45.00022 * 18 17 15 47 47 H 0.96699 * 114.00207 * 179.97438 * 19 18 17 48 48 H 1.08002 * 119.92809 * 179.97438 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5212 6 16 1.8563 -2.5801 1.5353 7 6 2.4435 -3.2184 3.1286 8 6 1.8966 -4.6308 3.3450 9 6 2.3924 -5.1693 4.6886 10 7 1.8682 -6.5215 4.8961 11 6 2.1756 -7.1982 6.0204 12 8 2.8874 -6.6863 6.8626 13 6 1.6467 -8.5612 6.2300 14 6 0.8284 -9.1520 5.2651 15 6 0.3369 -10.4266 5.4677 16 9 -0.4545 -10.9998 4.5347 17 6 0.6534 -11.1194 6.6258 18 6 0.1126 -12.5097 6.8396 19 8 -1.2719 -12.4342 7.1849 20 14 1.0526 -13.3363 8.2194 21 1 0.8960 -12.5468 9.4674 22 1 0.5201 -14.7065 8.4297 23 1 2.4915 -13.4147 7.8605 24 6 1.4620 -10.5406 7.5860 25 6 1.9604 -9.2648 7.3971 26 9 2.7501 -8.7002 8.3366 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2702 0.8900 33 1 2.1569 -1.9177 -1.4995 34 1 2.0853 -0.3903 -2.4106 35 1 3.5731 -0.8404 -1.5433 36 1 2.1347 -0.3548 2.4111 37 1 3.5738 -0.8931 1.5126 38 1 2.0964 -2.5674 3.9310 39 1 3.5332 -3.2466 3.1293 40 1 2.2437 -5.2818 2.5427 41 1 0.8070 -4.6025 3.3443 42 1 2.0456 -4.5184 5.4912 43 1 3.4820 -5.1977 4.6889 44 1 1.2994 -6.9295 4.2246 45 1 0.5841 -8.6152 4.3604 46 1 0.2276 -13.0891 5.9235 47 1 -1.6868 -13.2944 7.3371 48 1 1.7044 -11.0859 8.4862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_12360598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:54 Heat of formation + Delta-G solvation = -177.119349 kcal Electronic energy + Delta-G solvation = -28539.758861 eV Core-core repulsion = 24094.385914 eV Total energy + Delta-G solvation = -4445.372948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.17161 -50.10315 -41.38246 -39.89684 -37.65614 -37.02580 -34.32189 -33.03922 -31.43006 -29.97119 -28.89851 -28.39127 -28.30744 -28.29793 -26.80779 -24.46579 -23.64193 -22.81198 -21.85769 -19.63650 -18.79128 -18.63291 -18.46055 -17.45977 -17.35046 -17.29318 -16.87191 -16.55005 -16.50963 -16.33559 -15.78095 -15.66541 -15.60000 -15.36189 -14.99274 -14.76962 -14.58956 -14.43038 -14.25495 -14.09528 -13.93498 -13.80751 -13.75116 -13.58590 -13.54832 -13.25283 -13.12545 -13.09267 -13.07903 -12.98492 -12.53989 -12.37111 -12.15431 -12.08023 -11.91192 -11.37151 -11.26447 -10.77601 -10.73771 -10.65362 -10.61606 -10.44396 -10.29544 -9.85629 -8.57133 -0.85169 -0.35290 0.66017 1.02784 1.32409 1.42000 1.48931 1.51627 1.78587 1.84741 1.86095 1.95771 2.13573 2.18751 2.65420 2.72469 2.80978 3.04419 3.28533 3.42553 3.68712 3.74003 3.84266 3.85770 3.96653 4.11790 4.30447 4.30599 4.32207 4.34291 4.49777 4.54952 4.63985 4.66087 4.71165 4.79156 4.81047 4.81617 4.86378 4.87075 4.88221 4.96117 4.97431 5.02471 5.19997 5.34336 5.56151 5.65511 5.67113 6.24493 6.71994 6.92455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.081 2.919 3 C -0.451 4.451 4 C -0.461 4.461 5 C -0.386 4.386 6 S -0.273 6.273 7 C -0.089 4.089 8 C -0.106 4.106 9 C 0.126 3.874 10 N -0.706 5.706 11 C 0.558 3.442 12 O -0.562 6.562 13 C -0.149 4.149 14 C -0.075 4.075 15 C 0.107 3.893 16 F -0.122 7.122 17 C -0.059 4.059 18 C -0.089 4.089 19 O -0.557 6.557 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.242 1.242 23 H -0.253 1.253 24 C -0.141 4.141 25 C 0.138 3.862 26 F -0.125 7.125 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.417 0.583 45 H 0.186 0.814 46 H 0.105 0.895 47 H 0.405 0.595 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -1.700 -4.032 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.272 2.728 3 C -0.560 4.560 4 C -0.568 4.568 5 C -0.578 4.578 6 S -0.046 6.046 7 C -0.237 4.237 8 C -0.144 4.144 9 C 0.001 3.999 10 N -0.359 5.359 11 C 0.345 3.655 12 O -0.442 6.442 13 C -0.153 4.153 14 C -0.094 4.094 15 C 0.088 3.912 16 F -0.101 7.101 17 C -0.060 4.060 18 C -0.198 4.198 19 O -0.367 6.367 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.165 1.165 23 H -0.176 1.176 24 C -0.159 4.159 25 C 0.118 3.882 26 F -0.103 7.103 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.256 0.744 45 H 0.203 0.797 46 H 0.123 0.877 47 H 0.256 0.744 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.299 -1.633 -3.597 4.159 hybrid contribution 0.292 0.139 0.689 0.761 sum -1.007 -1.494 -2.909 3.422 Atomic orbital electron populations 1.26268 1.21625 1.04399 1.04389 0.77866 0.65783 0.66047 0.63070 1.26137 1.06570 1.18286 1.05009 1.26277 1.06346 1.08266 1.15906 1.28228 1.09424 0.98912 1.21263 1.86880 1.74716 1.15274 1.27742 1.23343 1.03813 0.99410 0.97135 1.21427 1.02484 0.94394 0.96126 1.21377 0.99169 0.81753 0.97600 1.45719 1.52289 1.17236 1.20683 1.18015 0.80306 0.84948 0.82219 1.90870 1.38672 1.69922 1.44718 1.19805 1.03896 0.95754 0.95840 1.21384 0.94742 0.93420 0.99886 1.17269 0.94019 0.92168 0.87767 1.91569 1.71127 1.84262 1.63097 1.19600 0.96687 0.96954 0.92751 1.24785 0.89292 0.95640 1.10105 1.86453 1.20872 1.36984 1.92391 0.85365 0.79062 0.79360 0.76883 1.18673 1.16518 1.17636 1.21066 0.99766 0.93952 1.01161 1.17760 0.92039 0.91870 0.86580 1.91593 1.70974 1.84841 1.62897 0.91229 0.91116 0.91450 0.90852 0.90605 0.90847 0.91545 0.91073 0.91212 0.87971 0.88134 0.89511 0.89583 0.89406 0.89351 0.91532 0.91447 0.74403 0.79725 0.87679 0.74383 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.06 8.65 113.37 0.98 2.04 16 2 Si 1.08 -5.86 12.30 68.60 0.84 -5.02 16 3 C -0.45 2.17 8.65 113.37 0.98 3.15 16 4 C -0.46 1.03 8.65 113.37 0.98 2.01 16 5 C -0.39 1.44 5.14 113.37 0.58 2.02 16 6 S -0.27 0.11 20.84 -56.49 -1.18 -1.07 16 7 C -0.09 0.28 5.94 71.98 0.43 0.71 16 8 C -0.11 0.56 5.34 30.59 0.16 0.72 16 9 C 0.13 -0.25 5.67 86.38 0.49 0.24 16 10 N -0.71 1.32 5.51 -466.10 -2.57 -1.24 16 11 C 0.56 3.25 7.77 86.74 0.67 3.92 16 12 O -0.56 -8.46 15.34 -3.94 -0.06 -8.52 16 13 C -0.15 -0.45 5.88 -20.06 -0.12 -0.57 16 14 C -0.08 0.21 9.52 22.57 0.21 0.42 16 15 C 0.11 -0.03 7.23 22.33 0.16 0.13 16 16 F -0.12 -0.07 16.73 44.97 0.75 0.68 16 17 C -0.06 -0.03 5.30 -19.78 -0.10 -0.13 16 18 C -0.09 0.31 2.43 71.24 0.17 0.48 16 19 O -0.56 1.31 12.86 -148.98 -1.92 -0.60 16 20 Si 0.97 -3.72 25.48 68.60 1.75 -1.97 16 21 H -0.26 0.19 6.72 99.48 0.67 0.85 16 22 H -0.24 1.11 7.11 99.48 0.71 1.82 16 23 H -0.25 0.57 7.11 99.48 0.71 1.27 16 24 C -0.14 -0.31 8.62 22.28 0.19 -0.12 16 25 C 0.14 0.84 7.28 22.67 0.17 1.00 16 26 F -0.12 -1.46 15.55 44.97 0.70 -0.76 16 27 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 -0.02 7.96 -2.38 -0.02 -0.04 16 30 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 33 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 35 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 37 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 38 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 43 H 0.07 0.00 8.14 -2.39 -0.02 -0.01 16 44 H 0.42 -3.60 6.50 -92.71 -0.60 -4.20 16 45 H 0.19 -1.90 6.40 -2.91 -0.02 -1.92 16 46 H 0.11 -0.76 7.89 -2.38 -0.02 -0.78 16 47 H 0.40 -4.66 8.74 -74.06 -0.65 -5.30 16 48 H 0.16 -0.02 4.86 -2.91 -0.01 -0.04 16 Total: 0.00 -20.28 418.48 4.74 -15.54 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: 0.45 Total: -13.06 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.96 Total: 16.04 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -2.57 Total: -1.24 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.98 Total: -9.13 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 1.45 Total: -0.08 kcal Atomic # 14 Polarization: -9.59 SS G_CDS: 2.59 Total: -6.99 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.18 Total: -1.07 kcal Total: -20.28 4.74 -15.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_12360598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.580 kcal (2) G-P(sol) polarization free energy of solvation -20.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds