Wall clock time and date at job start Tue Mar 9 2021 14:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86300 * 109.47117 * 2 1 4 4 C 1.86298 * 109.47398 * 239.99928 * 2 1 3 5 5 C 1.86303 * 109.47061 * 119.99805 * 2 1 3 6 6 S 1.81397 * 109.46902 * 59.04968 * 5 2 1 7 7 C 1.81401 * 102.99762 * 184.42285 * 6 5 2 8 8 C 1.53005 * 109.46913 * 175.57589 * 7 6 5 9 9 C 1.53003 * 109.47038 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46969 * 180.02562 * 9 8 7 11 11 C 1.34782 * 119.99764 * 180.02562 * 10 9 8 12 12 O 1.21283 * 120.00079 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00049 * 180.02562 * 11 10 9 14 14 O 1.42893 * 109.47213 * 180.02562 * 13 11 10 15 15 C 1.35899 * 117.00066 * 179.97438 * 14 13 11 16 16 C 1.38707 * 120.05343 * 359.95364 * 15 14 13 17 17 C 1.38177 * 119.94087 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.05809 * 0.02562 * 17 16 15 19 19 C 1.38290 * 120.10895 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05823 * 359.95799 * 19 18 17 21 21 C 1.50695 * 120.02626 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.47333 * 104.99875 * 21 20 19 23 23 Si 1.86301 * 109.47295 * 344.99567 * 21 20 19 24 24 H 1.48495 * 109.46873 * 60.00445 * 23 21 20 25 25 H 1.48507 * 109.46950 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46995 * 300.00235 * 23 21 20 27 27 H 1.08998 * 109.47223 * 300.00120 * 1 2 3 28 28 H 1.08998 * 109.46835 * 59.99822 * 1 2 3 29 29 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47436 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46887 * 299.99813 * 3 2 1 32 32 H 1.08998 * 109.47172 * 59.99848 * 3 2 1 33 33 H 1.09008 * 109.46916 * 297.55777 * 4 2 1 34 34 H 1.08996 * 109.47430 * 57.55462 * 4 2 1 35 35 H 1.08994 * 109.47262 * 177.56041 * 4 2 1 36 36 H 1.08994 * 109.47057 * 299.05088 * 5 2 1 37 37 H 1.08996 * 109.47236 * 179.04807 * 5 2 1 38 38 H 1.08995 * 109.47378 * 55.57821 * 7 6 5 39 39 H 1.09003 * 109.47234 * 295.57483 * 7 6 5 40 40 H 1.08992 * 109.47210 * 60.00368 * 8 7 6 41 41 H 1.09003 * 109.47084 * 299.99986 * 8 7 6 42 42 H 1.09001 * 109.47290 * 59.99727 * 9 8 7 43 43 H 1.09003 * 109.47151 * 299.99919 * 9 8 7 44 44 H 0.96996 * 120.00660 * 359.97438 * 10 9 8 45 45 H 1.08995 * 109.46993 * 59.99520 * 13 11 10 46 46 H 1.09003 * 109.46784 * 299.99694 * 13 11 10 47 47 H 1.07997 * 120.03260 * 0.03915 * 16 15 14 48 48 H 1.07994 * 119.96877 * 180.29922 * 17 16 15 49 49 H 1.08000 * 119.94634 * 179.97438 * 18 17 16 50 50 H 1.07998 * 119.96968 * 179.97438 * 19 18 17 51 51 H 1.09002 * 109.46986 * 224.99652 * 21 20 19 52 52 H 0.96698 * 113.99550 * 299.99944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 16 1.8562 -2.5800 1.5354 7 6 2.4435 -3.2182 3.1287 8 6 1.8965 -4.6306 3.3452 9 6 2.3912 -5.1686 4.6894 10 7 1.8680 -6.5212 4.8964 11 6 2.1746 -7.1976 6.0212 12 8 2.8841 -6.6866 6.8617 13 6 1.6369 -8.5892 6.2339 14 8 2.0979 -9.0912 7.4898 15 6 1.7001 -10.3433 7.8374 16 6 0.8822 -11.0733 6.9876 17 6 0.4787 -12.3460 7.3435 18 6 0.8890 -12.8916 8.5456 19 6 1.7035 -12.1654 9.3950 20 6 2.1100 -10.8929 9.0437 21 6 2.9981 -10.1024 9.9696 22 8 4.3299 -10.0843 9.4519 23 14 2.9981 -10.8939 11.6561 24 1 3.5070 -12.2849 11.5501 25 1 3.8728 -10.1145 12.5687 26 1 1.6141 -10.9127 12.1940 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1569 -1.9178 -1.4994 34 1 2.0855 -0.3904 -2.4105 35 1 3.5731 -0.8405 -1.5432 36 1 2.1346 -0.3546 2.4110 37 1 3.5738 -0.8930 1.5127 38 1 2.0963 -2.5672 3.9311 39 1 3.5331 -3.2465 3.1295 40 1 2.2436 -5.2816 2.5430 41 1 0.8068 -4.6023 3.3445 42 1 2.0438 -4.5175 5.4915 43 1 3.4809 -5.1968 4.6906 44 1 1.3003 -6.9298 4.2244 45 1 1.9855 -9.2399 5.4320 46 1 0.5472 -8.5618 6.2319 47 1 0.5612 -10.6474 6.0485 48 1 -0.1542 -12.9166 6.6800 49 1 0.5722 -13.8864 8.8221 50 1 2.0224 -12.5938 10.3337 51 1 2.6246 -9.0814 10.0474 52 1 4.7264 -10.9610 9.3557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310320_2989392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:03:15 Heat of formation + Delta-G solvation = -131.990232 kcal Electronic energy + Delta-G solvation = -27587.046545 eV Core-core repulsion = 23608.318683 eV Total energy + Delta-G solvation = -3978.727862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57729 -40.53101 -38.52569 -37.37247 -36.86250 -33.91984 -32.72837 -31.33142 -30.12281 -29.78494 -28.90372 -28.49741 -28.41690 -26.91467 -26.59491 -23.63428 -22.88484 -22.59680 -21.51787 -19.49643 -18.38671 -17.92632 -17.57475 -17.43505 -16.97864 -16.86685 -16.75129 -16.29312 -15.85859 -15.75002 -15.37216 -15.16073 -15.06239 -14.83091 -14.68588 -14.55001 -14.49766 -14.24483 -14.01523 -13.86022 -13.76714 -13.70459 -13.40779 -13.38833 -13.23206 -13.20325 -13.10601 -13.01976 -12.63412 -12.54517 -12.25420 -12.15041 -12.02782 -11.83091 -11.54517 -11.40481 -10.98962 -10.86817 -10.84616 -10.72527 -10.22883 -10.22608 -10.00382 -9.21195 -8.61137 0.19975 0.39714 0.55247 1.23972 1.35792 1.45893 1.48276 1.51468 1.59154 1.68028 1.79427 1.94008 1.98846 2.51051 2.56405 2.67354 3.44851 3.59341 3.70285 3.75040 3.75738 3.78492 3.86626 3.89877 3.91469 4.02002 4.15797 4.25659 4.27374 4.32424 4.41204 4.50457 4.58317 4.62030 4.63073 4.66441 4.71141 4.75053 4.76392 4.78796 4.83739 4.85445 4.92972 4.98017 5.23479 5.25526 5.30356 5.38532 5.46787 5.53185 5.56378 5.67367 6.22364 6.37791 6.74813 7.09966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.020 2.980 3 C -0.442 4.442 4 C -0.446 4.446 5 C -0.382 4.382 6 S -0.239 6.239 7 C -0.093 4.093 8 C -0.116 4.116 9 C 0.125 3.875 10 N -0.729 5.729 11 C 0.515 3.485 12 O -0.507 6.507 13 C 0.039 3.961 14 O -0.277 6.277 15 C 0.154 3.846 16 C -0.212 4.212 17 C -0.073 4.073 18 C -0.151 4.151 19 C -0.089 4.089 20 C -0.149 4.149 21 C -0.071 4.071 22 O -0.530 6.530 23 Si 0.950 3.050 24 H -0.252 1.252 25 H -0.252 1.252 26 H -0.249 1.249 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.403 0.597 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.129 0.871 50 H 0.130 0.870 51 H 0.117 0.883 52 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 -1.058 -3.914 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.215 2.785 3 C -0.552 4.552 4 C -0.554 4.554 5 C -0.575 4.575 6 S -0.012 6.012 7 C -0.241 4.241 8 C -0.155 4.155 9 C 0.001 3.999 10 N -0.384 5.384 11 C 0.299 3.701 12 O -0.380 6.380 13 C -0.040 4.040 14 O -0.188 6.188 15 C 0.108 3.892 16 C -0.231 4.231 17 C -0.091 4.091 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.150 4.150 21 C -0.182 4.182 22 O -0.334 6.334 23 Si 0.773 3.227 24 H -0.176 1.176 25 H -0.176 1.176 26 H -0.173 1.173 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.237 0.763 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.147 0.853 50 H 0.148 0.852 51 H 0.135 0.865 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.138 -0.798 -3.071 4.463 hybrid contribution 0.354 -0.089 -0.024 0.365 sum -2.784 -0.887 -3.095 4.257 Atomic orbital electron populations 1.26073 1.19941 1.04979 1.04331 0.78811 0.67740 0.67166 0.64773 1.26047 1.06324 1.17953 1.04839 1.26079 1.06180 1.08509 1.14653 1.28056 1.09009 1.00108 1.20319 1.86769 1.74197 1.13639 1.26629 1.23339 1.03747 0.99067 0.97959 1.21514 1.02169 0.94782 0.97018 1.21353 0.99509 0.82158 0.96922 1.45764 1.53804 1.17353 1.21468 1.20015 0.81269 0.86792 0.81988 1.90810 1.35560 1.68922 1.42742 1.22461 1.00341 0.93902 0.87253 1.86236 1.69177 1.27885 1.35523 1.18762 0.93220 0.83867 0.93355 1.21305 1.03495 0.97120 1.01141 1.21021 0.97577 0.94242 0.96223 1.21051 1.00113 1.00714 0.95003 1.21015 0.97032 0.92878 0.99718 1.19676 1.03860 0.95850 0.95570 1.24861 0.83349 1.05507 1.04437 1.86620 1.26062 1.33180 1.87545 0.85748 0.81667 0.79321 0.76012 1.17643 1.17617 1.17297 0.91269 0.91172 0.90566 0.91093 0.90649 0.91097 0.90628 0.91118 0.91256 0.88632 0.88692 0.89756 0.89742 0.90086 0.90029 0.90923 0.90899 0.76262 0.88773 0.88829 0.85208 0.85335 0.85341 0.85204 0.86471 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.58 8.65 101.05 0.87 1.45 16 2 Si 1.02 -2.67 12.30 -169.99 -2.09 -4.76 16 3 C -0.44 0.93 8.65 101.05 0.87 1.80 16 4 C -0.45 0.55 8.65 101.05 0.87 1.42 16 5 C -0.38 0.63 5.14 101.05 0.52 1.15 16 6 S -0.24 0.04 20.84 -107.50 -2.24 -2.20 16 7 C -0.09 0.13 5.94 37.16 0.22 0.35 16 8 C -0.12 0.29 5.34 -26.73 -0.14 0.14 16 9 C 0.13 -0.13 5.67 -4.04 -0.02 -0.16 16 10 N -0.73 1.07 5.56 -60.29 -0.33 0.74 16 11 C 0.52 0.97 7.91 -10.98 -0.09 0.88 16 12 O -0.51 -3.61 16.50 -14.36 -0.24 -3.85 16 13 C 0.04 -0.02 5.22 36.01 0.19 0.17 16 14 O -0.28 -0.97 9.00 -39.33 -0.35 -1.32 16 15 C 0.15 0.35 6.66 -39.22 -0.26 0.09 16 16 C -0.21 -0.01 9.04 -39.43 -0.36 -0.37 16 17 C -0.07 0.03 10.04 -39.60 -0.40 -0.36 16 18 C -0.15 0.02 10.04 -39.56 -0.40 -0.38 16 19 C -0.09 -0.06 8.66 -39.60 -0.34 -0.41 16 20 C -0.15 -0.31 5.27 -104.47 -0.55 -0.87 16 21 C -0.07 -0.16 2.38 36.00 0.09 -0.07 16 22 O -0.53 -1.74 12.88 -35.23 -0.45 -2.20 16 23 Si 0.95 0.72 25.49 -169.99 -4.33 -3.61 16 24 H -0.25 -0.01 6.73 56.52 0.38 0.37 16 25 H -0.25 -0.59 7.11 56.52 0.40 -0.18 16 26 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.03 7.96 -51.92 -0.41 -0.45 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 36 H 0.09 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 39 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 40 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 41 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 42 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.40 -1.90 8.47 -40.82 -0.35 -2.24 16 45 H 0.09 -0.27 7.66 -51.93 -0.40 -0.67 16 46 H 0.09 -0.29 7.66 -51.93 -0.40 -0.69 16 47 H 0.13 -0.33 6.30 -52.49 -0.33 -0.66 16 48 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 49 H 0.13 -0.26 8.06 -52.49 -0.42 -0.69 16 50 H 0.13 -0.09 4.89 -52.49 -0.26 -0.35 16 51 H 0.12 0.37 7.83 -51.93 -0.41 -0.04 16 52 H 0.37 -0.22 8.70 45.56 0.40 0.17 16 LS Contribution 440.86 15.07 6.64 6.64 Total: 0.00 -9.59 440.86 -10.81 -20.40 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: -8.49 Total: -14.71 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 1.08 Total: 4.85 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -0.33 Total: 0.74 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.04 Total: -7.36 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: -6.42 Total: -8.37 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.24 Total: -2.20 kcal Total LS contribution 6.64 Total: 6.64 kcal Total: -9.59 -10.81 -20.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_2989392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.588 kcal (2) G-P(sol) polarization free energy of solvation -9.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds