Wall clock time and date at job start Tue Mar 9 2021 14:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47386 * 2 1 4 4 C 1.86303 * 109.47057 * 239.99718 * 2 1 3 5 5 C 1.86302 * 109.47031 * 120.00211 * 2 1 3 6 6 S 1.81401 * 109.47285 * 59.04304 * 5 2 1 7 7 C 1.81399 * 102.99666 * 184.42394 * 6 5 2 8 8 C 1.53009 * 109.46952 * 175.57875 * 7 6 5 9 9 C 1.52993 * 109.47239 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47173 * 180.02562 * 9 8 7 11 11 C 1.34779 * 120.00348 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.50691 * 120.00279 * 179.97438 * 11 10 9 14 14 O 1.42902 * 109.47262 * 180.02562 * 13 11 10 15 15 C 1.35906 * 117.00004 * 180.02562 * 14 13 11 16 16 C 1.38729 * 120.05050 * 179.97438 * 15 14 13 17 17 C 1.38151 * 119.94045 * 180.30301 * 16 15 14 18 18 C 1.38266 * 120.05294 * 359.46232 * 17 16 15 19 19 C 1.50706 * 119.94433 * 180.25586 * 18 17 16 20 20 O 1.42893 * 109.47226 * 245.25944 * 19 18 17 21 21 Si 1.86300 * 109.46824 * 5.26299 * 19 18 17 22 22 H 1.48497 * 109.47464 * 59.99623 * 21 19 18 23 23 H 1.48502 * 109.46823 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46977 * 299.99587 * 21 19 18 25 25 C 1.38266 * 120.11314 * 0.51828 * 18 17 16 26 26 C 1.38143 * 120.05281 * 359.76523 * 25 18 17 27 27 H 1.09001 * 109.46984 * 300.00522 * 1 2 3 28 28 H 1.09003 * 109.46859 * 59.99968 * 1 2 3 29 29 H 1.08997 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47148 * 299.99855 * 3 2 1 32 32 H 1.08995 * 109.47239 * 59.99441 * 3 2 1 33 33 H 1.09000 * 109.47133 * 297.55901 * 4 2 1 34 34 H 1.09002 * 109.47196 * 57.55686 * 4 2 1 35 35 H 1.08997 * 109.47505 * 177.56124 * 4 2 1 36 36 H 1.09001 * 109.46810 * 299.04598 * 5 2 1 37 37 H 1.08996 * 109.47027 * 179.05179 * 5 2 1 38 38 H 1.08999 * 109.47176 * 55.58392 * 7 6 5 39 39 H 1.09001 * 109.47374 * 295.57484 * 7 6 5 40 40 H 1.09005 * 109.46949 * 59.99888 * 8 7 6 41 41 H 1.09006 * 109.46980 * 300.00407 * 8 7 6 42 42 H 1.08997 * 109.47645 * 59.99601 * 9 8 7 43 43 H 1.09001 * 109.46989 * 299.99549 * 9 8 7 44 44 H 0.96999 * 119.99848 * 359.97438 * 10 9 8 45 45 H 1.09005 * 109.47270 * 60.00650 * 13 11 10 46 46 H 1.08997 * 109.47835 * 300.00792 * 13 11 10 47 47 H 1.07999 * 120.03527 * 0.02562 * 16 15 14 48 48 H 1.07997 * 119.97408 * 179.70358 * 17 16 15 49 49 H 1.09004 * 109.46869 * 125.25477 * 19 18 17 50 50 H 0.96699 * 114.00143 * 60.00042 * 20 19 18 51 51 H 1.07998 * 119.97383 * 179.73767 * 25 18 17 52 52 H 1.08005 * 120.02291 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 16 1.8561 -2.5801 1.5355 7 6 2.4434 -3.2182 3.1287 8 6 1.8964 -4.6307 3.3453 9 6 2.3911 -5.1687 4.6893 10 7 1.8679 -6.5213 4.8964 11 6 2.1753 -7.1981 6.0207 12 8 2.8848 -6.6870 6.8612 13 6 1.6366 -8.5891 6.2339 14 8 2.0988 -9.0917 7.4893 15 6 1.7012 -10.3440 7.8367 16 6 2.1132 -10.8946 9.0415 17 6 1.7128 -12.1701 9.3895 18 6 0.8930 -12.8936 8.5432 19 6 0.4529 -14.2827 8.9279 20 8 1.0081 -15.2289 8.0124 21 14 1.0445 -14.6661 10.6524 22 1 0.4676 -13.6827 11.6038 23 1 0.6103 -16.0347 11.0318 24 1 2.5268 -14.5865 10.6963 25 6 0.4806 -12.3469 7.3420 26 6 0.8830 -11.0741 6.9868 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1207 2.2702 0.8899 33 1 2.1568 -1.9178 -1.4995 34 1 2.0853 -0.3904 -2.4106 35 1 3.5731 -0.8406 -1.5433 36 1 2.1346 -0.3547 2.4110 37 1 3.5738 -0.8930 1.5127 38 1 2.0962 -2.5672 3.9311 39 1 3.5330 -3.2466 3.1295 40 1 2.2435 -5.2817 2.5429 41 1 0.8067 -4.6024 3.3445 42 1 2.0438 -4.5176 5.4915 43 1 3.4808 -5.1970 4.6905 44 1 1.3001 -6.9298 4.2243 45 1 1.9838 -9.2402 5.4315 46 1 0.5470 -8.5610 6.2331 47 1 2.7502 -10.3283 9.7048 48 1 2.0372 -12.6011 10.3251 49 1 -0.6351 -14.3411 8.8958 50 1 1.9748 -15.2323 7.9882 51 1 -0.1563 -12.9157 6.6808 52 1 0.5610 -10.6477 6.0482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310320_2989410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:03:27 Heat of formation + Delta-G solvation = -134.411966 kcal Electronic energy + Delta-G solvation = -26903.986451 eV Core-core repulsion = 22925.153574 eV Total energy + Delta-G solvation = -3978.832876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55471 -40.57914 -39.04366 -37.22397 -36.86702 -33.96999 -32.23365 -31.99445 -30.15628 -29.97863 -28.92774 -28.50938 -28.42712 -27.07409 -26.12944 -24.06655 -22.98227 -22.41242 -21.59392 -19.53443 -18.54375 -18.19509 -17.62143 -17.46782 -17.02770 -16.86938 -16.61378 -16.38877 -16.11740 -15.54578 -15.51787 -15.22657 -15.05339 -14.87527 -14.77862 -14.56514 -14.40065 -14.25627 -14.06853 -14.04865 -13.86894 -13.74654 -13.43605 -13.41802 -13.33603 -13.25469 -13.21473 -13.11695 -12.65953 -12.27464 -12.25311 -12.23057 -12.15773 -12.05154 -11.55562 -11.42118 -11.03573 -10.89479 -10.87800 -10.74457 -10.41701 -10.28797 -10.06944 -9.23104 -8.62952 0.22760 0.32782 0.53204 1.15756 1.33775 1.41277 1.42994 1.43776 1.51807 1.66231 1.78221 1.91632 1.92679 2.49860 2.50638 2.64070 3.39284 3.47823 3.67210 3.68273 3.70623 3.71939 3.83867 3.84972 3.87320 3.88398 4.14117 4.21682 4.23793 4.35468 4.38180 4.54054 4.55838 4.60760 4.61808 4.61946 4.65092 4.74029 4.75248 4.77756 4.81902 4.82553 4.89330 4.96287 5.14851 5.18583 5.27025 5.37455 5.45936 5.52161 5.55366 5.62728 6.17303 6.32169 6.54331 7.02328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.020 2.980 3 C -0.442 4.442 4 C -0.446 4.446 5 C -0.382 4.382 6 S -0.238 6.238 7 C -0.093 4.093 8 C -0.116 4.116 9 C 0.125 3.875 10 N -0.728 5.728 11 C 0.516 3.484 12 O -0.512 6.512 13 C 0.041 3.959 14 O -0.289 6.289 15 C 0.134 3.866 16 C -0.141 4.141 17 C -0.084 4.084 18 C -0.158 4.158 19 C -0.075 4.075 20 O -0.540 6.540 21 Si 0.946 3.054 22 H -0.250 1.250 23 H -0.254 1.254 24 H -0.251 1.251 25 C -0.048 4.048 26 C -0.210 4.210 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.404 0.596 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.117 0.883 50 H 0.376 0.624 51 H 0.132 0.868 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 1.180 -3.547 4.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.215 2.785 3 C -0.552 4.552 4 C -0.554 4.554 5 C -0.575 4.575 6 S -0.012 6.012 7 C -0.241 4.241 8 C -0.155 4.155 9 C 0.000 4.000 10 N -0.382 5.382 11 C 0.300 3.700 12 O -0.386 6.386 13 C -0.038 4.038 14 O -0.201 6.201 15 C 0.088 3.912 16 C -0.159 4.159 17 C -0.102 4.102 18 C -0.158 4.158 19 C -0.186 4.186 20 O -0.345 6.345 21 Si 0.769 3.231 22 H -0.173 1.173 23 H -0.178 1.178 24 H -0.175 1.175 25 C -0.066 4.066 26 C -0.228 4.228 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.238 0.762 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.135 0.865 50 H 0.223 0.777 51 H 0.150 0.850 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.909 0.849 -2.797 3.492 hybrid contribution 0.814 0.712 0.183 1.097 sum -1.095 1.561 -2.615 3.236 Atomic orbital electron populations 1.26073 1.19929 1.04981 1.04337 0.78814 0.67750 0.67170 0.64771 1.26046 1.06321 1.17951 1.04846 1.26079 1.06175 1.08507 1.14654 1.28057 1.09003 1.00096 1.20324 1.86779 1.74183 1.13649 1.26563 1.23338 1.03734 0.99045 0.98018 1.21517 1.02209 0.94814 0.96971 1.21363 0.99502 0.82114 0.97003 1.45767 1.53670 1.17348 1.21460 1.20030 0.81198 0.86799 0.81952 1.90795 1.35907 1.69055 1.42832 1.22457 1.00527 0.93780 0.87026 1.86165 1.69582 1.28291 1.36057 1.19064 0.94114 0.83761 0.94241 1.20384 1.03913 0.95866 0.95764 1.20887 0.96473 0.93852 0.98970 1.20221 1.01495 0.97534 0.96571 1.24893 1.03022 0.86215 1.04462 1.86510 1.25598 1.58529 1.63860 0.85733 0.80801 0.81182 0.75362 1.17325 1.17788 1.17508 1.20803 0.96992 0.93550 0.95257 1.21302 1.03434 0.96929 1.01181 0.91270 0.91166 0.90566 0.91096 0.90643 0.91098 0.90630 0.91112 0.91259 0.88630 0.88693 0.89755 0.89752 0.90058 0.89993 0.90882 0.90885 0.76164 0.88629 0.88631 0.84530 0.85455 0.86534 0.77653 0.85037 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.63 8.65 101.05 0.87 1.51 16 2 Si 1.02 -2.81 12.30 -169.99 -2.09 -4.90 16 3 C -0.44 0.98 8.65 101.05 0.87 1.85 16 4 C -0.45 0.61 8.65 101.05 0.87 1.48 16 5 C -0.38 0.71 5.14 101.05 0.52 1.22 16 6 S -0.24 0.09 20.84 -107.50 -2.24 -2.15 16 7 C -0.09 0.16 5.94 37.16 0.22 0.38 16 8 C -0.12 0.32 5.34 -26.73 -0.14 0.18 16 9 C 0.13 -0.19 5.67 -4.05 -0.02 -0.21 16 10 N -0.73 1.40 5.56 -60.30 -0.34 1.07 16 11 C 0.52 0.67 7.91 -10.99 -0.09 0.58 16 12 O -0.51 -3.29 16.50 -14.36 -0.24 -3.53 16 13 C 0.04 -0.04 5.22 36.00 0.19 0.15 16 14 O -0.29 -0.81 9.67 -39.35 -0.38 -1.19 16 15 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 16 C -0.14 -0.23 9.99 -39.43 -0.39 -0.63 16 17 C -0.08 -0.06 8.66 -39.60 -0.34 -0.40 16 18 C -0.16 -0.05 5.35 -104.60 -0.56 -0.61 16 19 C -0.08 0.04 2.80 36.01 0.10 0.15 16 20 O -0.54 -0.06 12.83 -35.23 -0.45 -0.52 16 21 Si 0.95 -0.55 25.14 -169.99 -4.27 -4.82 16 22 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 23 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 24 H -0.25 0.11 7.03 56.52 0.40 0.50 16 25 C -0.05 0.00 9.68 -39.61 -0.38 -0.39 16 26 C -0.21 0.01 9.04 -39.44 -0.36 -0.34 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.08 -0.05 7.96 -51.93 -0.41 -0.46 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.09 -0.22 7.96 -51.92 -0.41 -0.63 16 37 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 38 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 39 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 40 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 41 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 42 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 43 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.40 -2.06 8.47 -40.82 -0.35 -2.41 16 45 H 0.10 -0.34 7.66 -51.93 -0.40 -0.73 16 46 H 0.10 -0.34 7.66 -51.93 -0.40 -0.73 16 47 H 0.14 0.14 8.06 -52.49 -0.42 -0.28 16 48 H 0.13 -0.09 4.85 -52.49 -0.25 -0.34 16 49 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 50 H 0.38 -1.10 8.70 45.56 0.40 -0.71 16 51 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 52 H 0.13 -0.35 6.30 -52.48 -0.33 -0.68 16 LS Contribution 441.64 15.07 6.66 6.66 Total: 0.00 -9.10 441.64 -10.73 -19.83 By element: Atomic # 1 Polarization: -6.88 SS G_CDS: -8.48 Total: -15.35 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 1.10 Total: 4.91 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -0.34 Total: 1.07 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -1.07 Total: -5.23 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: -6.36 Total: -9.72 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.24 Total: -2.15 kcal Total LS contribution 6.66 Total: 6.66 kcal Total: -9.10 -10.73 -19.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_2989410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.586 kcal (2) G-P(sol) polarization free energy of solvation -9.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds