Wall clock time and date at job start Tue Mar 9 2021 14:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47386 * 2 1 4 4 C 1.86303 * 109.47057 * 239.99718 * 2 1 3 5 5 C 1.86302 * 109.47031 * 120.00211 * 2 1 3 6 6 S 1.81401 * 109.47285 * 59.04304 * 5 2 1 7 7 C 1.81399 * 102.99666 * 184.42394 * 6 5 2 8 8 C 1.53009 * 109.46952 * 175.57875 * 7 6 5 9 9 C 1.52993 * 109.47239 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47173 * 180.02562 * 9 8 7 11 11 C 1.34779 * 120.00348 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.50691 * 120.00279 * 179.97438 * 11 10 9 14 14 O 1.42902 * 109.47262 * 180.02562 * 13 11 10 15 15 C 1.35906 * 117.00004 * 180.02562 * 14 13 11 16 16 C 1.38729 * 120.05050 * 179.97438 * 15 14 13 17 17 C 1.38151 * 119.94045 * 180.30301 * 16 15 14 18 18 C 1.38266 * 120.05294 * 359.46232 * 17 16 15 19 19 C 1.50706 * 119.94433 * 180.25586 * 18 17 16 20 20 O 1.42893 * 109.47226 * 245.25944 * 19 18 17 21 21 Si 1.86300 * 109.46824 * 5.26299 * 19 18 17 22 22 H 1.48497 * 109.47464 * 59.99623 * 21 19 18 23 23 H 1.48502 * 109.46823 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46977 * 299.99587 * 21 19 18 25 25 C 1.38266 * 120.11314 * 0.51828 * 18 17 16 26 26 C 1.38143 * 120.05281 * 359.76523 * 25 18 17 27 27 H 1.09001 * 109.46984 * 300.00522 * 1 2 3 28 28 H 1.09003 * 109.46859 * 59.99968 * 1 2 3 29 29 H 1.08997 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47148 * 299.99855 * 3 2 1 32 32 H 1.08995 * 109.47239 * 59.99441 * 3 2 1 33 33 H 1.09000 * 109.47133 * 297.55901 * 4 2 1 34 34 H 1.09002 * 109.47196 * 57.55686 * 4 2 1 35 35 H 1.08997 * 109.47505 * 177.56124 * 4 2 1 36 36 H 1.09001 * 109.46810 * 299.04598 * 5 2 1 37 37 H 1.08996 * 109.47027 * 179.05179 * 5 2 1 38 38 H 1.08999 * 109.47176 * 55.58392 * 7 6 5 39 39 H 1.09001 * 109.47374 * 295.57484 * 7 6 5 40 40 H 1.09005 * 109.46949 * 59.99888 * 8 7 6 41 41 H 1.09006 * 109.46980 * 300.00407 * 8 7 6 42 42 H 1.08997 * 109.47645 * 59.99601 * 9 8 7 43 43 H 1.09001 * 109.46989 * 299.99549 * 9 8 7 44 44 H 0.96999 * 119.99848 * 359.97438 * 10 9 8 45 45 H 1.09005 * 109.47270 * 60.00650 * 13 11 10 46 46 H 1.08997 * 109.47835 * 300.00792 * 13 11 10 47 47 H 1.07999 * 120.03527 * 0.02562 * 16 15 14 48 48 H 1.07997 * 119.97408 * 179.70358 * 17 16 15 49 49 H 1.09004 * 109.46869 * 125.25477 * 19 18 17 50 50 H 0.96699 * 114.00143 * 60.00042 * 20 19 18 51 51 H 1.07998 * 119.97383 * 179.73767 * 25 18 17 52 52 H 1.08005 * 120.02291 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 16 1.8561 -2.5801 1.5355 7 6 2.4434 -3.2182 3.1287 8 6 1.8964 -4.6307 3.3453 9 6 2.3911 -5.1687 4.6893 10 7 1.8679 -6.5213 4.8964 11 6 2.1753 -7.1981 6.0207 12 8 2.8848 -6.6870 6.8612 13 6 1.6366 -8.5891 6.2339 14 8 2.0988 -9.0917 7.4893 15 6 1.7012 -10.3440 7.8367 16 6 2.1132 -10.8946 9.0415 17 6 1.7128 -12.1701 9.3895 18 6 0.8930 -12.8936 8.5432 19 6 0.4529 -14.2827 8.9279 20 8 1.0081 -15.2289 8.0124 21 14 1.0445 -14.6661 10.6524 22 1 0.4676 -13.6827 11.6038 23 1 0.6103 -16.0347 11.0318 24 1 2.5268 -14.5865 10.6963 25 6 0.4806 -12.3469 7.3420 26 6 0.8830 -11.0741 6.9868 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1207 2.2702 0.8899 33 1 2.1568 -1.9178 -1.4995 34 1 2.0853 -0.3904 -2.4106 35 1 3.5731 -0.8406 -1.5433 36 1 2.1346 -0.3547 2.4110 37 1 3.5738 -0.8930 1.5127 38 1 2.0962 -2.5672 3.9311 39 1 3.5330 -3.2466 3.1295 40 1 2.2435 -5.2817 2.5429 41 1 0.8067 -4.6024 3.3445 42 1 2.0438 -4.5176 5.4915 43 1 3.4808 -5.1970 4.6905 44 1 1.3001 -6.9298 4.2243 45 1 1.9838 -9.2402 5.4315 46 1 0.5470 -8.5610 6.2331 47 1 2.7502 -10.3283 9.7048 48 1 2.0372 -12.6011 10.3251 49 1 -0.6351 -14.3411 8.8958 50 1 1.9748 -15.2323 7.9882 51 1 -0.1563 -12.9157 6.6808 52 1 0.5610 -10.6477 6.0482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_2989410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:03:26 Heat of formation + Delta-G solvation = -129.786806 kcal Electronic energy + Delta-G solvation = -26903.785889 eV Core-core repulsion = 22925.153574 eV Total energy + Delta-G solvation = -3978.632314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57478 -40.62869 -39.04721 -37.18832 -36.88189 -33.93116 -32.21134 -31.97337 -30.04007 -29.89944 -28.77590 -28.33779 -28.30134 -26.99738 -26.08450 -24.05040 -22.86003 -22.40793 -21.60439 -19.52107 -18.52681 -18.16400 -17.58658 -17.46338 -17.02164 -16.76040 -16.58755 -16.34255 -16.06534 -15.55119 -15.51220 -15.17943 -15.04086 -14.76200 -14.72684 -14.43649 -14.37688 -14.09952 -14.05273 -13.97031 -13.75179 -13.60103 -13.42339 -13.32293 -13.25567 -13.11706 -13.09347 -12.98987 -12.54337 -12.23379 -12.22127 -12.15561 -12.08624 -12.03978 -11.54813 -11.31529 -11.11464 -10.77452 -10.74104 -10.62214 -10.37579 -10.29071 -10.05910 -9.24388 -8.57947 0.23545 0.31679 0.64917 1.20764 1.38336 1.44557 1.45716 1.52286 1.53742 1.80447 1.92587 1.95389 2.12458 2.56869 2.64374 2.64949 3.47985 3.59270 3.72801 3.80527 3.83042 3.87880 3.93165 3.97885 4.01620 4.05271 4.26530 4.31371 4.33469 4.39030 4.53671 4.58692 4.64308 4.69704 4.78577 4.80574 4.81212 4.86064 4.86713 4.88074 4.95617 4.97120 4.98260 5.03741 5.15446 5.25109 5.27756 5.47705 5.55774 5.65137 5.66119 5.66835 6.22854 6.40856 6.72730 7.05378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.081 2.919 3 C -0.451 4.451 4 C -0.461 4.461 5 C -0.387 4.387 6 S -0.272 6.272 7 C -0.090 4.090 8 C -0.103 4.103 9 C 0.127 3.873 10 N -0.710 5.710 11 C 0.512 3.488 12 O -0.574 6.574 13 C 0.038 3.962 14 O -0.320 6.320 15 C 0.119 3.881 16 C -0.162 4.162 17 C -0.091 4.091 18 C -0.161 4.161 19 C -0.069 4.069 20 O -0.552 6.552 21 Si 0.973 3.027 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.254 1.254 25 C -0.053 4.053 26 C -0.204 4.204 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.422 0.578 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.388 0.612 51 H 0.147 0.853 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 0.906 -4.805 5.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.272 2.728 3 C -0.560 4.560 4 C -0.568 4.568 5 C -0.578 4.578 6 S -0.045 6.045 7 C -0.238 4.238 8 C -0.142 4.142 9 C 0.002 3.998 10 N -0.364 5.364 11 C 0.298 3.702 12 O -0.453 6.453 13 C -0.040 4.040 14 O -0.233 6.233 15 C 0.074 3.926 16 C -0.180 4.180 17 C -0.109 4.109 18 C -0.161 4.161 19 C -0.180 4.180 20 O -0.359 6.359 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.178 1.178 25 C -0.071 4.071 26 C -0.223 4.223 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.260 0.740 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.152 0.848 49 H 0.144 0.856 50 H 0.237 0.763 51 H 0.165 0.835 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.764 0.562 -4.111 4.986 hybrid contribution 1.072 0.809 0.544 1.449 sum -1.692 1.371 -3.568 4.180 Atomic orbital electron populations 1.26258 1.21552 1.04412 1.04397 0.77874 0.65840 0.66031 0.63068 1.26139 1.06562 1.18317 1.05008 1.26274 1.06333 1.08267 1.15892 1.28230 1.09403 0.98938 1.21271 1.86865 1.74676 1.15260 1.27703 1.23355 1.03749 0.99561 0.97142 1.21410 1.02458 0.94238 0.96107 1.21298 0.98898 0.82223 0.97405 1.45650 1.52883 1.16940 1.20958 1.20556 0.80276 0.87650 0.81698 1.90767 1.38896 1.70583 1.45032 1.22716 1.02122 0.92493 0.86629 1.86120 1.70433 1.28878 1.37887 1.19216 0.94910 0.83791 0.94681 1.20532 1.04628 0.96510 0.96373 1.20995 0.96739 0.93651 0.99491 1.20362 1.01231 0.97808 0.96738 1.24849 1.03581 0.85648 1.03904 1.86479 1.26891 1.58633 1.63925 0.85349 0.80258 0.79303 0.75200 1.18491 1.20041 1.17847 1.21051 0.96979 0.93754 0.95274 1.21579 1.02303 0.96614 1.01782 0.91219 0.91113 0.91424 0.90876 0.90609 0.90848 0.91530 0.91068 0.91233 0.87987 0.88176 0.89603 0.89731 0.89440 0.89310 0.91960 0.92009 0.73982 0.85661 0.85649 0.85127 0.84805 0.85555 0.76277 0.83545 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.24 8.65 113.37 0.98 2.22 16 2 Si 1.08 -6.17 12.30 68.60 0.84 -5.33 16 3 C -0.45 2.27 8.65 113.37 0.98 3.25 16 4 C -0.46 1.17 8.65 113.37 0.98 2.15 16 5 C -0.39 1.54 5.14 113.37 0.58 2.12 16 6 S -0.27 0.21 20.84 -56.49 -1.18 -0.97 16 7 C -0.09 0.31 5.94 71.99 0.43 0.74 16 8 C -0.10 0.62 5.34 30.60 0.16 0.78 16 9 C 0.13 -0.34 5.67 86.38 0.49 0.15 16 10 N -0.71 3.08 5.56 -463.08 -2.57 0.51 16 11 C 0.51 1.47 7.91 87.65 0.69 2.17 16 12 O -0.57 -8.46 16.50 15.99 0.26 -8.20 16 13 C 0.04 -0.11 5.22 71.23 0.37 0.26 16 14 O -0.32 -1.97 9.67 -73.45 -0.71 -2.68 16 15 C 0.12 0.44 6.69 22.50 0.15 0.59 16 16 C -0.16 -0.73 9.99 22.37 0.22 -0.50 16 17 C -0.09 -0.17 8.66 22.26 0.19 0.03 16 18 C -0.16 -0.02 5.35 -19.85 -0.11 -0.12 16 19 C -0.07 0.12 2.80 71.24 0.20 0.32 16 20 O -0.55 0.33 12.83 -148.98 -1.91 -1.58 16 21 Si 0.97 -0.86 25.14 68.60 1.72 0.87 16 22 H -0.26 -0.21 7.11 99.48 0.71 0.50 16 23 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 24 H -0.25 0.15 7.03 99.48 0.70 0.85 16 25 C -0.05 0.07 9.68 22.25 0.22 0.28 16 26 C -0.20 0.32 9.04 22.36 0.20 0.52 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.06 7.96 -2.39 -0.02 -0.07 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.10 -0.53 7.96 -2.39 -0.02 -0.54 16 37 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 38 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 42 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.42 -5.01 8.47 -92.71 -0.79 -5.80 16 45 H 0.13 -1.16 7.66 -2.38 -0.02 -1.17 16 46 H 0.13 -1.16 7.66 -2.39 -0.02 -1.18 16 47 H 0.13 0.57 8.06 -2.91 -0.02 0.55 16 48 H 0.13 -0.08 4.85 -2.91 -0.01 -0.10 16 49 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 50 H 0.39 -2.52 8.70 -74.06 -0.64 -3.16 16 51 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 52 H 0.16 -1.32 6.30 -2.91 -0.02 -1.33 16 Total: 0.00 -23.02 441.64 3.43 -19.58 By element: Atomic # 1 Polarization: -17.38 SS G_CDS: 0.22 Total: -17.16 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.75 Total: 14.95 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -2.57 Total: 0.51 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -2.36 Total: -12.45 kcal Atomic # 14 Polarization: -7.03 SS G_CDS: 2.57 Total: -4.46 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.18 Total: -0.97 kcal Total: -23.02 3.43 -19.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_2989410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.203 kcal (2) G-P(sol) polarization free energy of solvation -23.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds