Wall clock time and date at job start Tue Mar 9 2021 14:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86296 * 109.47055 * 2 1 4 4 C 1.86294 * 109.47109 * 239.99669 * 2 1 3 5 5 C 1.86307 * 109.46765 * 119.99743 * 2 1 3 6 6 S 1.81397 * 109.47421 * 59.05091 * 5 2 1 7 7 C 1.81394 * 103.00135 * 184.42274 * 6 5 2 8 8 C 1.52998 * 109.47270 * 175.57688 * 7 6 5 9 9 C 1.52996 * 109.47192 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99858 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00151 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99871 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.46773 * 179.97438 * 13 11 10 15 15 O 1.42908 * 109.46888 * 180.02562 * 14 13 11 16 16 C 1.35899 * 116.99760 * 180.02562 * 15 14 13 17 17 C 1.38704 * 120.05990 * 359.71981 * 16 15 14 18 18 C 1.38170 * 119.94424 * 179.72638 * 17 16 15 19 19 C 1.38241 * 120.05544 * 0.57468 * 18 17 16 20 20 C 1.38292 * 120.11010 * 359.68084 * 19 18 17 21 21 C 1.50697 * 119.96976 * 180.02562 * 20 19 18 22 22 O 1.42892 * 109.47315 * 245.02040 * 21 20 19 23 23 Si 1.86298 * 109.47184 * 5.02525 * 21 20 19 24 24 H 1.48500 * 109.47389 * 59.99794 * 23 21 20 25 25 H 1.48502 * 109.46912 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46964 * 299.99705 * 23 21 20 27 27 C 1.38118 * 120.05523 * 0.04140 * 20 19 18 28 28 H 1.09004 * 109.47297 * 300.00449 * 1 2 3 29 29 H 1.09000 * 109.47392 * 60.00073 * 1 2 3 30 30 H 1.08995 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46710 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46710 * 299.99714 * 3 2 1 33 33 H 1.08994 * 109.47403 * 59.99709 * 3 2 1 34 34 H 1.09003 * 109.46954 * 297.55600 * 4 2 1 35 35 H 1.08999 * 109.47388 * 57.55449 * 4 2 1 36 36 H 1.08997 * 109.47276 * 177.55876 * 4 2 1 37 37 H 1.08994 * 109.47324 * 299.04335 * 5 2 1 38 38 H 1.08997 * 109.46389 * 179.05056 * 5 2 1 39 39 H 1.08995 * 109.47637 * 55.57139 * 7 6 5 40 40 H 1.09000 * 109.46854 * 295.57321 * 7 6 5 41 41 H 1.09005 * 109.47200 * 59.99246 * 8 7 6 42 42 H 1.09000 * 109.46882 * 299.99616 * 8 7 6 43 43 H 1.09004 * 109.47190 * 60.00128 * 9 8 7 44 44 H 1.09000 * 109.47095 * 299.99732 * 9 8 7 45 45 H 0.96995 * 120.00490 * 0.02562 * 10 9 8 46 46 H 1.09004 * 109.46682 * 60.00421 * 13 11 10 47 47 H 1.09000 * 109.47307 * 300.00207 * 13 11 10 48 48 H 1.09004 * 109.47160 * 60.00729 * 14 13 11 49 49 H 1.09000 * 109.47386 * 300.00174 * 14 13 11 50 50 H 1.07998 * 120.02656 * 0.02562 * 17 16 15 51 51 H 1.08001 * 119.97030 * 180.28034 * 18 17 16 52 52 H 1.07992 * 119.94707 * 179.70279 * 19 18 17 53 53 H 1.09004 * 109.46656 * 125.01950 * 21 20 19 54 54 H 0.96700 * 114.00118 * 59.99773 * 22 21 20 55 55 H 1.08006 * 120.02693 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4839 -0.8782 1.5213 6 16 1.8563 -2.5801 1.5356 7 6 2.4434 -3.2181 3.1289 8 6 1.8965 -4.6305 3.3455 9 6 2.3922 -5.1689 4.6890 10 7 1.8680 -6.5211 4.8966 11 6 2.1761 -7.1981 6.0206 12 8 2.8869 -6.6877 6.8603 13 6 1.6364 -8.5888 6.2344 14 6 2.1334 -9.1277 7.5774 15 8 1.6221 -10.4468 7.7799 16 6 1.9712 -11.0732 8.9342 17 6 2.7936 -10.4342 9.8503 18 6 3.1425 -11.0711 11.0257 19 6 2.6823 -12.3489 11.2838 20 6 1.8665 -12.9903 10.3696 21 6 1.3662 -14.3830 10.6544 22 8 1.9143 -15.2911 9.6969 23 14 1.8924 -14.8938 12.3669 24 1 1.3228 -13.9501 13.3620 25 1 1.3999 -16.2665 12.6472 26 1 3.3745 -14.8724 12.4563 27 6 1.5103 -12.3556 9.1958 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.5741 1.7564 -0.0005 32 1 2.1207 2.2702 -0.8900 33 1 2.1207 2.2703 0.8899 34 1 2.1569 -1.9178 -1.4993 35 1 2.0853 -0.3905 -2.4105 36 1 3.5731 -0.8406 -1.5432 37 1 2.1347 -0.3546 2.4111 38 1 3.5738 -0.8929 1.5127 39 1 2.0963 -2.5671 3.9312 40 1 3.5330 -3.2464 3.1296 41 1 2.2436 -5.2816 2.5430 42 1 0.8068 -4.6022 3.3447 43 1 2.0454 -4.5180 5.4916 44 1 3.4819 -5.1973 4.6893 45 1 1.2998 -6.9295 4.2249 46 1 1.9822 -9.2401 5.4316 47 1 0.5468 -8.5596 6.2349 48 1 1.7880 -8.4766 8.3804 49 1 3.2230 -9.1570 7.5765 50 1 3.1570 -9.4377 9.6472 51 1 3.7791 -10.5722 11.7414 52 1 2.9600 -12.8470 12.2008 53 1 0.2783 -14.3986 10.5888 54 1 2.8805 -15.3290 9.6989 55 1 0.8728 -12.8568 8.4823 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_4549614.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:03:52 Heat of formation + Delta-G solvation = -138.449641 kcal Electronic energy + Delta-G solvation = -28566.941146 eV Core-core repulsion = 24432.395564 eV Total energy + Delta-G solvation = -4134.545582 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.42434 -40.80583 -39.15507 -37.29142 -36.96555 -34.01692 -33.08415 -32.48336 -30.88266 -29.97726 -28.84269 -28.34263 -28.30528 -27.70188 -26.87952 -24.97963 -23.72814 -22.81409 -22.11063 -21.32667 -19.36797 -18.23743 -17.78218 -17.58672 -17.50250 -17.20345 -16.89806 -16.87368 -16.54439 -16.17199 -15.84799 -15.62397 -15.13937 -14.95991 -14.83620 -14.74372 -14.50820 -14.41525 -14.33404 -14.22393 -14.10029 -13.77230 -13.75578 -13.52804 -13.30069 -13.21106 -13.10934 -13.09437 -12.99237 -12.95533 -12.87815 -12.53015 -12.38491 -12.15010 -12.07612 -11.92533 -11.83215 -11.52378 -11.32283 -11.15635 -10.77561 -10.74431 -10.62309 -10.45979 -10.22893 -9.95824 -9.30232 -8.58524 0.17401 0.35449 0.65440 1.16849 1.47629 1.47834 1.50777 1.55071 1.69084 1.80618 1.93044 1.94994 2.12371 2.47791 2.63561 2.64755 3.50588 3.54567 3.67675 3.80634 3.82590 3.87074 3.87358 3.88827 4.01999 4.08106 4.18178 4.26958 4.31320 4.33686 4.38723 4.53656 4.54674 4.63307 4.65543 4.65706 4.75754 4.78285 4.80378 4.81119 4.85743 4.86328 4.87596 4.95284 4.95887 4.97417 5.05464 5.22674 5.31491 5.34088 5.40319 5.55559 5.64864 5.66468 5.66936 6.30234 6.40536 6.69353 7.09714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.081 2.919 3 C -0.451 4.451 4 C -0.461 4.461 5 C -0.386 4.386 6 S -0.274 6.274 7 C -0.088 4.088 8 C -0.105 4.105 9 C 0.126 3.874 10 N -0.716 5.716 11 C 0.519 3.481 12 O -0.585 6.585 13 C -0.132 4.132 14 C 0.074 3.926 15 O -0.323 6.323 16 C 0.118 3.882 17 C -0.212 4.212 18 C -0.077 4.077 19 C -0.171 4.171 20 C -0.083 4.083 21 C -0.083 4.083 22 O -0.552 6.552 23 Si 0.990 3.010 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.250 1.250 27 C -0.136 4.136 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.420 0.580 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.136 0.864 51 H 0.149 0.851 52 H 0.136 0.864 53 H 0.125 0.875 54 H 0.389 0.611 55 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 2.420 -2.077 3.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.272 2.728 3 C -0.560 4.560 4 C -0.568 4.568 5 C -0.578 4.578 6 S -0.048 6.048 7 C -0.237 4.237 8 C -0.143 4.143 9 C 0.001 3.999 10 N -0.369 5.369 11 C 0.307 3.693 12 O -0.465 6.465 13 C -0.172 4.172 14 C -0.002 4.002 15 O -0.237 6.237 16 C 0.073 3.927 17 C -0.230 4.230 18 C -0.095 4.095 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.814 3.186 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.174 1.174 27 C -0.155 4.155 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.257 0.743 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.154 0.846 51 H 0.166 0.834 52 H 0.153 0.847 53 H 0.143 0.857 54 H 0.238 0.762 55 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.818 1.849 -1.709 2.647 hybrid contribution 1.134 1.001 0.490 1.590 sum 0.316 2.849 -1.219 3.115 Atomic orbital electron populations 1.26263 1.21610 1.04374 1.04395 0.77871 0.65800 0.66062 0.63060 1.26132 1.06571 1.18251 1.05019 1.26277 1.06343 1.08246 1.15925 1.28224 1.09408 0.98860 1.21268 1.86899 1.74725 1.15333 1.27805 1.23345 1.03729 0.99514 0.97076 1.21412 1.02322 0.94262 0.96351 1.21281 0.98847 0.82630 0.97182 1.45842 1.52629 1.16935 1.21487 1.20637 0.79706 0.87788 0.81214 1.90737 1.39608 1.71135 1.45066 1.21435 1.04854 0.92607 0.98289 1.22443 0.98893 0.80825 0.98025 1.85956 1.70523 1.30517 1.36670 1.19158 0.94960 0.92692 0.85909 1.21530 1.02890 1.02165 0.96458 1.21197 0.97825 0.94309 0.96150 1.21200 1.00696 0.96563 1.00383 1.20249 0.97181 0.96960 0.93971 1.25130 1.03395 0.86058 1.04674 1.86490 1.27135 1.62186 1.60050 0.85111 0.80501 0.79103 0.73930 1.18125 1.19984 1.17367 1.20363 1.03802 0.92499 0.98800 0.91210 0.91119 0.91489 0.90848 0.90611 0.90820 0.91588 0.91077 0.91215 0.87956 0.88145 0.89565 0.89697 0.89707 0.89562 0.91941 0.91975 0.74294 0.85479 0.85448 0.91680 0.91698 0.84594 0.83359 0.84672 0.85712 0.76168 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.13 8.65 113.37 0.98 2.11 16 2 Si 1.08 -6.02 12.30 68.60 0.84 -5.17 16 3 C -0.45 2.26 8.65 113.37 0.98 3.24 16 4 C -0.46 1.06 8.65 113.37 0.98 2.04 16 5 C -0.39 1.50 5.14 113.37 0.58 2.08 16 6 S -0.27 0.10 20.84 -56.49 -1.18 -1.07 16 7 C -0.09 0.29 5.94 71.98 0.43 0.71 16 8 C -0.10 0.56 5.34 30.59 0.16 0.72 16 9 C 0.13 -0.35 5.67 86.38 0.49 0.14 16 10 N -0.72 2.91 5.56 -463.06 -2.57 0.34 16 11 C 0.52 0.53 7.83 87.66 0.69 1.22 16 12 O -0.59 -5.96 15.98 -3.02 -0.05 -6.01 16 13 C -0.13 0.49 6.07 29.85 0.18 0.67 16 14 C 0.07 0.13 4.03 71.98 0.29 0.42 16 15 O -0.32 -1.53 10.14 -92.42 -0.94 -2.47 16 16 C 0.12 0.67 6.69 22.51 0.15 0.82 16 17 C -0.21 -0.85 9.04 22.37 0.20 -0.65 16 18 C -0.08 -0.15 10.04 22.25 0.22 0.08 16 19 C -0.17 -0.29 8.67 22.28 0.19 -0.09 16 20 C -0.08 -0.21 5.35 -19.88 -0.11 -0.32 16 21 C -0.08 0.00 2.80 71.24 0.20 0.20 16 22 O -0.55 -0.75 12.83 -148.98 -1.91 -2.66 16 23 Si 0.99 -1.05 25.14 68.60 1.72 0.67 16 24 H -0.26 -0.02 7.11 99.48 0.71 0.69 16 25 H -0.27 -0.62 7.11 99.48 0.71 0.09 16 26 H -0.25 0.36 7.04 99.48 0.70 1.06 16 27 C -0.14 -0.66 9.62 22.37 0.22 -0.45 16 28 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 29 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 31 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 32 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 37 H 0.10 -0.53 7.96 -2.39 -0.02 -0.55 16 38 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 39 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 42 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 44 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.42 -4.24 8.47 -92.71 -0.79 -5.03 16 46 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 47 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.06 0.20 7.63 -2.38 -0.02 0.18 16 49 H 0.06 0.20 7.61 -2.39 -0.02 0.18 16 50 H 0.14 0.34 6.30 -2.91 -0.02 0.32 16 51 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 52 H 0.14 -0.22 4.86 -2.91 -0.01 -0.23 16 53 H 0.13 -0.20 7.96 -2.39 -0.02 -0.22 16 54 H 0.39 -1.96 8.70 -74.06 -0.64 -2.61 16 55 H 0.13 0.58 8.06 -2.91 -0.02 0.55 16 Total: 0.00 -18.58 462.60 2.95 -15.64 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: 0.18 Total: -12.22 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.84 Total: 12.95 kcal Atomic # 7 Polarization: 2.91 SS G_CDS: -2.57 Total: 0.34 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -2.90 Total: -11.14 kcal Atomic # 14 Polarization: -7.07 SS G_CDS: 2.57 Total: -4.50 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.18 Total: -1.07 kcal Total: -18.58 2.95 -15.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_4549614.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.813 kcal (2) G-P(sol) polarization free energy of solvation -18.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds