Wall clock time and date at job start Tue Mar 9 2021 14:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.47172 * 2 1 4 4 C 1.86297 * 109.46889 * 240.00393 * 2 1 3 5 5 C 1.86304 * 109.47411 * 120.00488 * 2 1 3 6 6 S 1.81395 * 109.46944 * 59.04665 * 5 2 1 7 7 C 1.81408 * 102.99745 * 184.42633 * 6 5 2 8 8 C 1.53006 * 109.47009 * 175.57667 * 7 6 5 9 9 C 1.52997 * 109.46887 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.46934 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00167 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99774 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00414 * 179.97438 * 11 10 9 14 14 O 1.42899 * 109.47387 * 179.97438 * 13 11 10 15 15 C 1.35900 * 117.00059 * 179.97438 * 14 13 11 16 16 C 1.38715 * 120.05603 * 0.02562 * 15 14 13 17 17 C 1.38165 * 119.94345 * 180.02562 * 16 15 14 18 18 C 1.38240 * 120.05510 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.94165 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.46829 * 244.99851 * 19 18 17 21 21 Si 1.86294 * 109.47161 * 4.99984 * 19 18 17 22 22 H 1.48497 * 109.46933 * 60.00297 * 21 19 18 23 23 H 1.48503 * 109.47140 * 179.97438 * 21 19 18 24 24 H 1.48488 * 109.47481 * 299.99991 * 21 19 18 25 25 C 1.38288 * 120.11447 * 0.27590 * 18 17 16 26 26 C 1.38129 * 120.05035 * 359.45524 * 25 18 17 27 27 N 1.48009 * 120.02270 * 180.29765 * 26 25 18 28 28 O 1.21791 * 120.00390 * 0.24236 * 27 26 25 29 29 O 1.21799 * 119.99523 * 180.24690 * 27 26 25 30 30 H 1.09008 * 109.47036 * 299.99215 * 1 2 3 31 31 H 1.08998 * 109.47736 * 59.99667 * 1 2 3 32 32 H 1.09006 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47237 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47062 * 300.00746 * 3 2 1 35 35 H 1.09008 * 109.46499 * 60.00456 * 3 2 1 36 36 H 1.08999 * 109.47397 * 297.55763 * 4 2 1 37 37 H 1.08998 * 109.47291 * 57.55752 * 4 2 1 38 38 H 1.08998 * 109.47374 * 177.55836 * 4 2 1 39 39 H 1.09004 * 109.46785 * 299.05123 * 5 2 1 40 40 H 1.09001 * 109.46968 * 179.05008 * 5 2 1 41 41 H 1.08995 * 109.46899 * 55.57895 * 7 6 5 42 42 H 1.09003 * 109.46741 * 295.57475 * 7 6 5 43 43 H 1.09001 * 109.47028 * 59.99917 * 8 7 6 44 44 H 1.08992 * 109.46833 * 299.99747 * 8 7 6 45 45 H 1.08994 * 109.47376 * 59.99894 * 9 8 7 46 46 H 1.09003 * 109.46974 * 299.99877 * 9 8 7 47 47 H 0.96998 * 120.00144 * 359.97438 * 10 9 8 48 48 H 1.09001 * 109.46962 * 59.99562 * 13 11 10 49 49 H 1.08998 * 109.47081 * 300.00070 * 13 11 10 50 50 H 1.08007 * 120.02505 * 359.97438 * 16 15 14 51 51 H 1.07997 * 119.96709 * 179.97438 * 17 16 15 52 52 H 1.09002 * 109.47322 * 125.00501 * 19 18 17 53 53 H 0.96700 * 113.99616 * 60.00620 * 20 19 18 54 54 H 1.07998 * 119.97530 * 179.70327 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8784 1.5211 6 16 1.8563 -2.5802 1.5352 7 6 2.4436 -3.2185 3.1285 8 6 1.8966 -4.6309 3.3449 9 6 2.3925 -5.1695 4.6884 10 7 1.8693 -6.5221 4.8953 11 6 2.1767 -7.1989 6.0196 12 8 2.8870 -6.6883 6.8597 13 6 1.6381 -8.5901 6.2328 14 8 2.1013 -9.0932 7.4875 15 6 1.7030 -10.3451 7.8353 16 6 0.8837 -11.0745 6.9862 17 6 0.4797 -12.3468 7.3423 18 6 0.8917 -12.8933 8.5434 19 6 0.4500 -14.2816 8.9290 20 8 -0.3829 -14.2116 10.0880 21 14 -0.5056 -15.0423 7.5224 22 1 0.3600 -15.1150 6.3180 23 1 -0.9404 -16.4106 7.9021 24 1 -1.6977 -14.2082 7.2255 25 6 1.7042 -12.1663 9.3940 26 6 2.1154 -10.8960 9.0400 27 7 2.9904 -10.1209 9.9480 28 8 3.3518 -10.6048 11.0056 29 8 3.3490 -8.9991 9.6374 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1207 2.2702 0.8901 36 1 2.1568 -1.9176 -1.4997 37 1 2.0853 -0.3902 -2.4106 38 1 3.5730 -0.8404 -1.5434 39 1 2.1347 -0.3548 2.4110 40 1 3.5740 -0.8931 1.5125 41 1 2.0964 -2.5675 3.9308 42 1 3.5333 -3.2467 3.1291 43 1 2.2437 -5.2819 2.5425 44 1 0.8071 -4.6026 3.3442 45 1 2.0458 -4.5186 5.4910 46 1 3.4821 -5.1978 4.6886 47 1 1.3009 -6.9303 4.2236 48 1 1.9851 -9.2410 5.4303 49 1 0.5485 -8.5619 6.2321 50 1 0.5612 -10.6477 6.0478 51 1 -0.1584 -12.9149 6.6816 52 1 1.3251 -14.8939 9.1469 53 1 -1.1824 -13.6814 9.9663 54 1 2.0209 -12.5935 10.3340 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_4549638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:08:56 Heat of formation + Delta-G solvation = -125.059919 kcal Electronic energy + Delta-G solvation = -33530.660741 eV Core-core repulsion = 28721.216964 eV Total energy + Delta-G solvation = -4809.443777 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 416.149 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.30200 -41.79664 -40.76411 -39.45052 -37.59554 -37.40440 -36.90764 -33.95180 -33.46163 -32.26627 -30.25279 -29.95599 -28.78606 -28.33845 -28.30001 -27.83191 -27.14509 -26.35021 -24.09820 -22.91218 -22.75423 -21.70865 -20.53497 -19.79000 -19.23631 -18.64613 -18.55374 -18.17996 -17.68952 -17.46411 -17.11626 -16.81457 -16.57840 -16.30907 -16.06743 -15.72585 -15.62871 -15.35706 -15.14591 -14.78446 -14.74761 -14.43108 -14.10533 -14.09988 -14.05367 -13.90095 -13.74944 -13.73516 -13.52267 -13.27519 -13.22848 -13.10832 -13.08980 -12.98806 -12.70738 -12.53331 -12.40583 -12.30908 -12.27420 -12.20200 -12.08541 -12.06213 -11.72683 -11.31738 -11.12073 -10.85397 -10.77412 -10.74025 -10.62282 -10.52187 -10.26963 -9.81515 -8.57528 -1.32686 -0.25865 0.14027 0.33931 0.64848 1.14248 1.21296 1.41197 1.47789 1.51442 1.54992 1.80130 1.95649 1.98644 2.01842 2.11760 2.31678 2.64918 3.10811 3.20669 3.38649 3.52223 3.57966 3.67916 3.77417 3.83889 3.88308 3.90144 3.97564 3.99426 4.28274 4.31289 4.34151 4.38383 4.55227 4.56221 4.61622 4.65991 4.78686 4.80306 4.80598 4.80935 4.86205 4.86850 4.88175 4.95824 4.98467 5.04822 5.06292 5.18057 5.27176 5.55713 5.65117 5.66942 5.72606 6.39121 6.42026 6.68489 7.09927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.081 2.919 3 C -0.452 4.452 4 C -0.461 4.461 5 C -0.388 4.388 6 S -0.269 6.269 7 C -0.091 4.091 8 C -0.102 4.102 9 C 0.127 3.873 10 N -0.708 5.708 11 C 0.507 3.493 12 O -0.567 6.567 13 C 0.025 3.975 14 O -0.292 6.292 15 C 0.193 3.807 16 C -0.190 4.190 17 C -0.018 4.018 18 C -0.150 4.150 19 C -0.086 4.086 20 O -0.554 6.554 21 Si 0.985 3.015 22 H -0.242 1.242 23 H -0.279 1.279 24 H -0.230 1.230 25 C 0.002 3.998 26 C -0.103 4.103 27 N 0.034 4.966 28 O -0.196 6.196 29 O -0.178 6.178 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.423 0.577 48 H 0.144 0.856 49 H 0.145 0.855 50 H 0.203 0.797 51 H 0.177 0.823 52 H 0.126 0.874 53 H 0.392 0.608 54 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -2.610 -11.448 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.272 2.728 3 C -0.561 4.561 4 C -0.567 4.567 5 C -0.579 4.579 6 S -0.043 6.043 7 C -0.239 4.239 8 C -0.141 4.141 9 C 0.002 3.998 10 N -0.363 5.363 11 C 0.293 3.707 12 O -0.444 6.444 13 C -0.051 4.051 14 O -0.202 6.202 15 C 0.143 3.857 16 C -0.208 4.208 17 C -0.035 4.035 18 C -0.151 4.151 19 C -0.195 4.195 20 O -0.362 6.362 21 Si 0.806 3.194 22 H -0.165 1.165 23 H -0.205 1.205 24 H -0.153 1.153 25 C -0.017 4.017 26 C -0.189 4.189 27 N 0.545 4.455 28 O -0.405 6.405 29 O -0.391 6.391 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.262 0.738 48 H 0.161 0.839 49 H 0.162 0.838 50 H 0.220 0.780 51 H 0.194 0.806 52 H 0.143 0.857 53 H 0.241 0.759 54 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.358 -3.700 -12.323 15.343 hybrid contribution 1.138 1.425 1.700 2.493 sum -7.220 -2.275 -10.623 13.045 Atomic orbital electron populations 1.26251 1.21462 1.04457 1.04401 0.77875 0.65896 0.65982 0.63070 1.26151 1.06544 1.18415 1.04991 1.26267 1.06317 1.08291 1.15855 1.28237 1.09383 0.99050 1.21276 1.86815 1.74643 1.15157 1.27651 1.23366 1.03717 0.99716 0.97144 1.21400 1.02487 0.94097 0.96071 1.21277 0.98832 0.82342 0.97382 1.45592 1.52981 1.16832 1.20915 1.20515 0.80645 0.87712 0.81877 1.90854 1.38381 1.70353 1.44861 1.23104 1.03210 0.93224 0.85609 1.86470 1.68377 1.26587 1.38736 1.18944 0.91275 0.84812 0.90678 1.21759 1.00907 0.95860 1.02280 1.21732 0.93655 0.93929 0.94217 1.20466 1.00482 0.98792 0.95367 1.25283 1.00696 0.94385 0.99153 1.86555 1.38165 1.75302 1.36147 0.85215 0.79696 0.79353 0.75165 1.16483 1.20493 1.15297 1.20893 0.91820 0.88556 1.00424 1.20891 1.07956 0.96606 0.93409 1.43880 0.99664 1.01010 1.00956 1.94498 1.60194 1.73215 1.12577 1.94685 1.59795 1.04786 1.79809 0.91243 0.91087 0.91343 0.90921 0.90594 0.90893 0.91457 0.91046 0.91264 0.88048 0.88243 0.89724 0.89862 0.89314 0.89158 0.92160 0.92216 0.73824 0.83850 0.83803 0.77977 0.80608 0.85659 0.75889 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.42 8.65 113.37 0.98 2.40 16 2 Si 1.08 -6.39 12.30 68.60 0.84 -5.55 16 3 C -0.45 2.27 8.65 113.37 0.98 3.25 16 4 C -0.46 1.32 8.65 113.37 0.98 2.30 16 5 C -0.39 1.58 5.14 113.37 0.58 2.16 16 6 S -0.27 0.34 20.84 -56.49 -1.18 -0.84 16 7 C -0.09 0.34 5.94 71.98 0.43 0.77 16 8 C -0.10 0.71 5.34 30.60 0.16 0.87 16 9 C 0.13 -0.42 5.67 86.38 0.49 0.07 16 10 N -0.71 4.42 5.56 -463.07 -2.57 1.84 16 11 C 0.51 0.64 7.91 87.65 0.69 1.34 16 12 O -0.57 -8.65 16.50 15.99 0.26 -8.39 16 13 C 0.03 -0.18 5.22 71.23 0.37 0.19 16 14 O -0.29 -1.39 7.68 -63.40 -0.49 -1.88 16 15 C 0.19 0.17 6.67 22.51 0.15 0.32 16 16 C -0.19 1.87 9.04 22.37 0.20 2.08 16 17 C -0.02 0.19 8.66 22.25 0.19 0.38 16 18 C -0.15 0.84 5.35 -19.85 -0.11 0.74 16 19 C -0.09 0.61 2.80 71.24 0.20 0.81 16 20 O -0.55 2.23 12.83 -148.98 -1.91 0.32 16 21 Si 0.98 -9.46 25.13 68.60 1.72 -7.74 16 22 H -0.24 2.45 7.11 99.48 0.71 3.16 16 23 H -0.28 1.02 7.11 99.48 0.71 1.72 16 24 H -0.23 2.83 7.04 99.48 0.70 3.53 16 25 C 0.00 0.00 9.19 22.26 0.20 0.21 16 26 C -0.10 -0.71 6.87 36.47 0.25 -0.46 16 27 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 28 O -0.20 -3.54 18.45 18.90 0.35 -3.19 16 29 O -0.18 -3.88 17.24 25.61 0.44 -3.44 16 30 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 32 H 0.07 -0.10 7.96 -2.38 -0.02 -0.11 16 33 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 34 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 36 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 39 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 40 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 41 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.30 16 43 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.42 -6.27 8.47 -92.71 -0.79 -7.06 16 48 H 0.14 -2.25 7.66 -2.39 -0.02 -2.27 16 49 H 0.14 -2.27 7.66 -2.39 -0.02 -2.29 16 50 H 0.20 -3.99 6.30 -2.91 -0.02 -4.01 16 51 H 0.18 -2.96 4.86 -2.91 -0.01 -2.97 16 52 H 0.13 -0.95 7.96 -2.39 -0.02 -0.97 16 53 H 0.39 -4.40 8.70 -74.06 -0.64 -5.05 16 54 H 0.16 0.38 7.61 -2.91 -0.02 0.36 16 Total: 0.00 -36.71 467.66 4.28 -32.43 By element: Atomic # 1 Polarization: -21.61 SS G_CDS: 0.25 Total: -21.36 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.76 Total: 17.42 kcal Atomic # 7 Polarization: 4.99 SS G_CDS: -2.78 Total: 2.21 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.34 Total: -16.57 kcal Atomic # 14 Polarization: -15.85 SS G_CDS: 2.57 Total: -13.29 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.18 Total: -0.84 kcal Total: -36.71 4.28 -32.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_4549638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.627 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds