Wall clock time and date at job start Tue Mar 9 2021 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86296 * 109.47179 * 2 1 4 4 C 1.86300 * 109.46928 * 239.99932 * 2 1 3 5 5 C 1.86299 * 109.47062 * 119.99909 * 2 1 3 6 6 S 1.81406 * 109.46840 * 59.04529 * 5 2 1 7 7 C 1.81403 * 102.99721 * 184.42395 * 6 5 2 8 8 C 1.53000 * 109.47079 * 175.58037 * 7 6 5 9 9 C 1.53005 * 109.47279 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99594 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99807 * 179.72237 * 11 10 9 14 14 O 1.42898 * 109.47302 * 179.97438 * 13 11 10 15 15 C 1.35897 * 117.00486 * 180.02562 * 14 13 11 16 16 C 1.38721 * 120.05143 * 359.73318 * 15 14 13 17 17 C 1.38170 * 119.94003 * 179.72062 * 16 15 14 18 18 C 1.38248 * 120.05429 * 0.56993 * 17 16 15 19 19 C 1.38282 * 120.11312 * 359.68534 * 18 17 16 20 20 C 1.50704 * 119.97151 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46858 * 245.01685 * 20 19 18 22 22 Si 1.86295 * 109.47051 * 5.01851 * 20 19 18 23 23 H 1.48506 * 109.47127 * 59.99930 * 22 20 19 24 24 H 1.48502 * 109.47379 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47151 * 300.00249 * 22 20 19 26 26 C 1.38122 * 120.05596 * 0.03891 * 19 18 17 27 27 H 1.08992 * 109.47097 * 300.00240 * 1 2 3 28 28 H 1.08999 * 109.46715 * 60.00190 * 1 2 3 29 29 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47141 * 300.00102 * 3 2 1 32 32 H 1.09000 * 109.47180 * 59.99555 * 3 2 1 33 33 H 1.08997 * 109.47082 * 297.55612 * 4 2 1 34 34 H 1.08993 * 109.47432 * 57.56198 * 4 2 1 35 35 H 1.09001 * 109.46491 * 177.56077 * 4 2 1 36 36 H 1.09002 * 109.47304 * 299.05223 * 5 2 1 37 37 H 1.08994 * 109.47585 * 179.04673 * 5 2 1 38 38 H 1.09004 * 109.47464 * 55.57983 * 7 6 5 39 39 H 1.09008 * 109.47306 * 295.58075 * 7 6 5 40 40 H 1.09001 * 109.47357 * 60.00074 * 8 7 6 41 41 H 1.08993 * 109.47163 * 299.99731 * 8 7 6 42 42 H 1.09001 * 109.46880 * 59.99765 * 9 8 7 43 43 H 1.09006 * 109.46686 * 300.00186 * 9 8 7 44 44 H 0.96995 * 120.00083 * 0.02562 * 10 9 8 45 45 H 1.08994 * 109.47655 * 300.00624 * 13 11 10 46 46 H 1.09008 * 109.47084 * 60.00579 * 13 11 10 47 47 H 1.07994 * 120.02739 * 359.97438 * 16 15 14 48 48 H 1.08002 * 119.96742 * 180.27314 * 17 16 15 49 49 H 1.07999 * 119.93896 * 179.70225 * 18 17 16 50 50 H 1.08997 * 109.46761 * 125.02051 * 20 19 18 51 51 H 0.96702 * 113.99943 * 60.00568 * 21 20 19 52 52 H 1.08004 * 120.02691 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 16 1.8561 -2.5801 1.5354 7 6 2.4433 -3.2182 3.1287 8 6 1.8964 -4.6306 3.3452 9 6 2.3911 -5.1687 4.6894 10 7 1.8669 -6.5208 4.8969 11 6 2.1742 -7.1975 6.0213 12 8 2.8843 -6.6867 6.8615 13 6 1.6299 -8.5859 6.2377 14 8 2.0939 -9.0894 7.4919 15 6 1.6918 -10.3395 7.8419 16 6 0.8631 -11.0644 6.9981 17 6 0.4603 -12.3374 7.3535 18 6 0.8730 -12.8841 8.5544 19 6 1.6948 -12.1615 9.3997 20 6 2.1432 -12.7608 10.7077 21 8 1.5955 -12.0057 11.7902 22 14 1.5514 -14.5238 10.8182 23 1 2.1206 -15.3085 9.6932 24 1 1.9937 -15.1147 12.1068 25 1 0.0686 -14.5539 10.7424 26 6 2.1048 -10.8907 9.0464 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1569 -1.9178 -1.4995 34 1 2.0854 -0.3904 -2.4106 35 1 3.5731 -0.8405 -1.5432 36 1 2.1347 -0.3546 2.4111 37 1 3.5738 -0.8931 1.5127 38 1 2.0962 -2.5672 3.9311 39 1 3.5331 -3.2465 3.1295 40 1 2.2435 -5.2817 2.5429 41 1 0.8068 -4.6024 3.3445 42 1 2.0436 -4.5176 5.4915 43 1 3.4808 -5.1969 4.6906 44 1 1.2993 -6.9294 4.2248 45 1 0.5404 -8.5530 6.2396 46 1 1.9721 -9.2395 5.4352 47 1 0.5363 -10.6357 6.0623 48 1 -0.1813 -12.9038 6.6948 49 1 0.5531 -13.8775 8.8325 50 1 3.2315 -12.7387 10.7633 51 1 0.6289 -11.9819 11.8038 52 1 2.7470 -10.3269 9.7068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310320_4860298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:09:39 Heat of formation + Delta-G solvation = -133.959162 kcal Electronic energy + Delta-G solvation = -26982.344660 eV Core-core repulsion = 23003.531418 eV Total energy + Delta-G solvation = -3978.813241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54469 -40.57182 -38.98810 -37.27731 -36.87791 -33.96110 -32.50118 -31.71362 -30.13233 -29.74070 -28.91228 -28.50686 -28.42660 -27.13590 -26.55101 -23.72173 -23.05201 -22.56315 -21.47591 -19.34328 -18.54896 -17.94643 -17.60958 -17.38032 -17.24287 -16.92114 -16.86182 -16.39324 -16.16059 -15.60662 -15.50612 -15.18368 -14.99386 -14.86845 -14.77098 -14.56297 -14.44017 -14.25484 -14.05008 -13.98693 -13.86634 -13.74038 -13.42317 -13.40399 -13.25272 -13.21435 -13.11518 -13.03365 -12.65183 -12.58054 -12.27514 -12.20292 -12.11820 -11.96806 -11.55335 -11.41857 -11.02582 -10.88783 -10.87601 -10.74174 -10.47040 -10.27685 -9.94763 -9.28543 -8.62664 0.18014 0.38026 0.53559 1.11958 1.34372 1.42833 1.43704 1.45283 1.52002 1.66534 1.78394 1.90725 1.93023 2.50045 2.52416 2.64764 3.39681 3.47929 3.63185 3.67788 3.71605 3.72624 3.84911 3.85870 3.87851 3.97911 4.14485 4.15300 4.24550 4.35083 4.38761 4.52953 4.55176 4.61045 4.62202 4.64458 4.65360 4.74189 4.75380 4.77844 4.82566 4.82786 4.89991 4.95188 5.18482 5.21844 5.32661 5.37686 5.41167 5.52277 5.55492 5.62540 6.19040 6.34370 6.54916 7.03802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.020 2.980 3 C -0.442 4.442 4 C -0.446 4.446 5 C -0.382 4.382 6 S -0.239 6.239 7 C -0.093 4.093 8 C -0.116 4.116 9 C 0.125 3.875 10 N -0.728 5.728 11 C 0.516 3.484 12 O -0.511 6.511 13 C 0.041 3.959 14 O -0.288 6.288 15 C 0.129 3.871 16 C -0.206 4.206 17 C -0.072 4.072 18 C -0.163 4.163 19 C -0.080 4.080 20 C -0.083 4.083 21 O -0.536 6.536 22 Si 0.956 3.044 23 H -0.250 1.250 24 H -0.254 1.254 25 H -0.252 1.252 26 C -0.117 4.117 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.404 0.596 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.377 0.623 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -0.183 -4.922 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.215 2.785 3 C -0.552 4.552 4 C -0.554 4.554 5 C -0.575 4.575 6 S -0.012 6.012 7 C -0.241 4.241 8 C -0.155 4.155 9 C 0.000 4.000 10 N -0.383 5.383 11 C 0.300 3.700 12 O -0.385 6.385 13 C -0.038 4.038 14 O -0.200 6.200 15 C 0.084 3.916 16 C -0.225 4.225 17 C -0.090 4.090 18 C -0.181 4.181 19 C -0.080 4.080 20 C -0.194 4.194 21 O -0.341 6.341 22 Si 0.778 3.222 23 H -0.174 1.174 24 H -0.178 1.178 25 H -0.175 1.175 26 C -0.136 4.136 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.238 0.762 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.148 0.852 48 H 0.148 0.852 49 H 0.141 0.859 50 H 0.138 0.862 51 H 0.224 0.776 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.656 -0.972 -4.714 5.497 hybrid contribution -0.028 0.784 0.216 0.814 sum -2.684 -0.188 -4.498 5.242 Atomic orbital electron populations 1.26071 1.19930 1.04979 1.04336 0.78814 0.67749 0.67173 0.64772 1.26045 1.06323 1.17949 1.04846 1.26078 1.06177 1.08504 1.14655 1.28058 1.09004 1.00088 1.20323 1.86775 1.74193 1.13660 1.26581 1.23339 1.03740 0.99047 0.98003 1.21514 1.02198 0.94809 0.96977 1.21366 0.99502 0.82132 0.96990 1.45765 1.53667 1.17368 1.21471 1.20032 0.81241 0.86780 0.81955 1.90798 1.35875 1.68959 1.42847 1.22450 1.00432 0.93813 0.87072 1.86171 1.69338 1.28434 1.36100 1.19052 0.94352 0.83927 0.94306 1.21297 1.03016 0.96959 1.01215 1.20887 0.97916 0.94309 0.95904 1.20993 1.00820 1.00394 0.95854 1.20122 0.97112 0.94201 0.96601 1.25060 1.03538 1.06331 0.84440 1.86542 1.25740 1.74818 1.46991 0.85602 0.80655 0.74678 0.81249 1.17354 1.17780 1.17536 1.20278 1.03013 0.95346 0.94973 0.91272 0.91165 0.90569 0.91094 0.90646 0.91094 0.90632 0.91114 0.91258 0.88625 0.88690 0.89747 0.89747 0.90073 0.90005 0.90881 0.90877 0.76192 0.88675 0.88699 0.85216 0.85171 0.85920 0.86188 0.77609 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.62 8.65 101.05 0.87 1.50 16 2 Si 1.02 -2.78 12.30 -169.99 -2.09 -4.87 16 3 C -0.44 0.97 8.65 101.05 0.87 1.84 16 4 C -0.45 0.60 8.65 101.05 0.87 1.48 16 5 C -0.38 0.69 5.14 101.05 0.52 1.21 16 6 S -0.24 0.08 20.84 -107.50 -2.24 -2.16 16 7 C -0.09 0.15 5.94 37.16 0.22 0.38 16 8 C -0.12 0.32 5.34 -26.73 -0.14 0.17 16 9 C 0.12 -0.17 5.67 -4.04 -0.02 -0.20 16 10 N -0.73 1.33 5.56 -60.29 -0.33 0.99 16 11 C 0.52 0.76 7.91 -10.99 -0.09 0.67 16 12 O -0.51 -3.41 16.50 -14.35 -0.24 -3.64 16 13 C 0.04 -0.03 5.22 36.00 0.19 0.15 16 14 O -0.29 -0.91 9.67 -39.33 -0.38 -1.29 16 15 C 0.13 0.27 6.69 -39.21 -0.26 0.01 16 16 C -0.21 0.03 9.04 -39.43 -0.36 -0.33 16 17 C -0.07 0.03 10.04 -39.60 -0.40 -0.37 16 18 C -0.16 -0.04 8.67 -39.56 -0.34 -0.38 16 19 C -0.08 -0.08 5.35 -104.65 -0.56 -0.64 16 20 C -0.08 0.00 2.80 36.01 0.10 0.10 16 21 O -0.54 -0.48 12.83 -35.23 -0.45 -0.93 16 22 Si 0.96 -0.56 25.14 -169.99 -4.27 -4.83 16 23 H -0.25 0.02 7.11 56.52 0.40 0.42 16 24 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 25 H -0.25 0.15 7.04 56.52 0.40 0.55 16 26 C -0.12 -0.28 9.62 -39.43 -0.38 -0.65 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.08 -0.05 7.96 -51.93 -0.41 -0.46 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 36 H 0.09 -0.22 7.96 -51.92 -0.41 -0.63 16 37 H 0.09 -0.20 7.96 -51.93 -0.41 -0.62 16 38 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 39 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 40 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 41 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 42 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.40 -2.04 8.47 -40.82 -0.35 -2.39 16 45 H 0.10 -0.33 7.65 -51.93 -0.40 -0.72 16 46 H 0.10 -0.33 7.67 -51.92 -0.40 -0.72 16 47 H 0.13 -0.37 6.30 -52.49 -0.33 -0.70 16 48 H 0.13 -0.35 8.06 -52.49 -0.42 -0.77 16 49 H 0.12 -0.13 4.86 -52.49 -0.26 -0.39 16 50 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 51 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 52 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 LS Contribution 441.65 15.07 6.66 6.66 Total: 0.00 -9.33 441.65 -10.73 -20.05 By element: Atomic # 1 Polarization: -6.44 SS G_CDS: -8.47 Total: -14.91 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 1.10 Total: 4.93 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -0.33 Total: 0.99 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -1.07 Total: -5.86 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: -6.36 Total: -9.71 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.24 Total: -2.16 kcal Total LS contribution 6.66 Total: 6.66 kcal Total: -9.33 -10.73 -20.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_4860298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.907 kcal (2) G-P(sol) polarization free energy of solvation -9.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds