Wall clock time and date at job start Tue Mar 9 2021 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86296 * 109.47179 * 2 1 4 4 C 1.86300 * 109.46928 * 239.99932 * 2 1 3 5 5 C 1.86299 * 109.47062 * 119.99909 * 2 1 3 6 6 S 1.81406 * 109.46840 * 59.04529 * 5 2 1 7 7 C 1.81403 * 102.99721 * 184.42395 * 6 5 2 8 8 C 1.53000 * 109.47079 * 175.58037 * 7 6 5 9 9 C 1.53005 * 109.47279 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99594 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99807 * 179.72237 * 11 10 9 14 14 O 1.42898 * 109.47302 * 179.97438 * 13 11 10 15 15 C 1.35897 * 117.00486 * 180.02562 * 14 13 11 16 16 C 1.38721 * 120.05143 * 359.73318 * 15 14 13 17 17 C 1.38170 * 119.94003 * 179.72062 * 16 15 14 18 18 C 1.38248 * 120.05429 * 0.56993 * 17 16 15 19 19 C 1.38282 * 120.11312 * 359.68534 * 18 17 16 20 20 C 1.50704 * 119.97151 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46858 * 245.01685 * 20 19 18 22 22 Si 1.86295 * 109.47051 * 5.01851 * 20 19 18 23 23 H 1.48506 * 109.47127 * 59.99930 * 22 20 19 24 24 H 1.48502 * 109.47379 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47151 * 300.00249 * 22 20 19 26 26 C 1.38122 * 120.05596 * 0.03891 * 19 18 17 27 27 H 1.08992 * 109.47097 * 300.00240 * 1 2 3 28 28 H 1.08999 * 109.46715 * 60.00190 * 1 2 3 29 29 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47141 * 300.00102 * 3 2 1 32 32 H 1.09000 * 109.47180 * 59.99555 * 3 2 1 33 33 H 1.08997 * 109.47082 * 297.55612 * 4 2 1 34 34 H 1.08993 * 109.47432 * 57.56198 * 4 2 1 35 35 H 1.09001 * 109.46491 * 177.56077 * 4 2 1 36 36 H 1.09002 * 109.47304 * 299.05223 * 5 2 1 37 37 H 1.08994 * 109.47585 * 179.04673 * 5 2 1 38 38 H 1.09004 * 109.47464 * 55.57983 * 7 6 5 39 39 H 1.09008 * 109.47306 * 295.58075 * 7 6 5 40 40 H 1.09001 * 109.47357 * 60.00074 * 8 7 6 41 41 H 1.08993 * 109.47163 * 299.99731 * 8 7 6 42 42 H 1.09001 * 109.46880 * 59.99765 * 9 8 7 43 43 H 1.09006 * 109.46686 * 300.00186 * 9 8 7 44 44 H 0.96995 * 120.00083 * 0.02562 * 10 9 8 45 45 H 1.08994 * 109.47655 * 300.00624 * 13 11 10 46 46 H 1.09008 * 109.47084 * 60.00579 * 13 11 10 47 47 H 1.07994 * 120.02739 * 359.97438 * 16 15 14 48 48 H 1.08002 * 119.96742 * 180.27314 * 17 16 15 49 49 H 1.07999 * 119.93896 * 179.70225 * 18 17 16 50 50 H 1.08997 * 109.46761 * 125.02051 * 20 19 18 51 51 H 0.96702 * 113.99943 * 60.00568 * 21 20 19 52 52 H 1.08004 * 120.02691 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 16 1.8561 -2.5801 1.5354 7 6 2.4433 -3.2182 3.1287 8 6 1.8964 -4.6306 3.3452 9 6 2.3911 -5.1687 4.6894 10 7 1.8669 -6.5208 4.8969 11 6 2.1742 -7.1975 6.0213 12 8 2.8843 -6.6867 6.8615 13 6 1.6299 -8.5859 6.2377 14 8 2.0939 -9.0894 7.4919 15 6 1.6918 -10.3395 7.8419 16 6 0.8631 -11.0644 6.9981 17 6 0.4603 -12.3374 7.3535 18 6 0.8730 -12.8841 8.5544 19 6 1.6948 -12.1615 9.3997 20 6 2.1432 -12.7608 10.7077 21 8 1.5955 -12.0057 11.7902 22 14 1.5514 -14.5238 10.8182 23 1 2.1206 -15.3085 9.6932 24 1 1.9937 -15.1147 12.1068 25 1 0.0686 -14.5539 10.7424 26 6 2.1048 -10.8907 9.0464 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1569 -1.9178 -1.4995 34 1 2.0854 -0.3904 -2.4106 35 1 3.5731 -0.8405 -1.5432 36 1 2.1347 -0.3546 2.4111 37 1 3.5738 -0.8931 1.5127 38 1 2.0962 -2.5672 3.9311 39 1 3.5331 -3.2465 3.1295 40 1 2.2435 -5.2817 2.5429 41 1 0.8068 -4.6024 3.3445 42 1 2.0436 -4.5176 5.4915 43 1 3.4808 -5.1969 4.6906 44 1 1.2993 -6.9294 4.2248 45 1 0.5404 -8.5530 6.2396 46 1 1.9721 -9.2395 5.4352 47 1 0.5363 -10.6357 6.0623 48 1 -0.1813 -12.9038 6.6948 49 1 0.5531 -13.8775 8.8325 50 1 3.2315 -12.7387 10.7633 51 1 0.6289 -11.9819 11.8038 52 1 2.7470 -10.3269 9.7068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_4860298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:09:38 Heat of formation + Delta-G solvation = -129.748259 kcal Electronic energy + Delta-G solvation = -26982.162061 eV Core-core repulsion = 23003.531418 eV Total energy + Delta-G solvation = -3978.630643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57882 -40.63668 -39.01991 -37.28342 -36.90893 -33.93537 -32.48552 -31.70099 -29.99218 -29.70830 -28.76598 -28.33819 -28.30256 -27.08836 -26.51413 -23.71829 -22.94398 -22.56972 -21.49496 -19.34041 -18.55731 -17.94486 -17.59107 -17.40165 -17.20682 -16.92932 -16.76489 -16.36451 -16.16236 -15.61507 -15.53274 -15.13420 -14.96127 -14.76615 -14.72832 -14.44409 -14.40262 -14.10053 -14.04052 -13.96886 -13.75281 -13.59937 -13.40586 -13.25927 -13.12217 -13.09576 -12.99484 -12.99005 -12.60550 -12.54073 -12.19945 -12.09612 -12.05825 -11.96313 -11.54743 -11.31713 -11.11635 -10.77595 -10.74161 -10.62427 -10.46718 -10.29569 -9.94316 -9.30829 -8.58115 0.19051 0.36244 0.64674 1.15133 1.38005 1.45727 1.47898 1.52694 1.54991 1.80199 1.92528 1.95346 2.12358 2.57154 2.64840 2.65071 3.46916 3.53909 3.68796 3.81996 3.82761 3.87733 3.97278 3.99290 4.04987 4.08018 4.20722 4.31149 4.33125 4.36355 4.53455 4.54768 4.63614 4.66721 4.78506 4.80517 4.81145 4.86072 4.86646 4.88003 4.95591 4.96854 4.97000 5.03421 5.21697 5.24964 5.33707 5.42155 5.55706 5.65061 5.66605 5.66819 6.23878 6.41421 6.68364 7.05370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.081 2.919 3 C -0.451 4.451 4 C -0.461 4.461 5 C -0.387 4.387 6 S -0.271 6.271 7 C -0.090 4.090 8 C -0.103 4.103 9 C 0.127 3.873 10 N -0.709 5.709 11 C 0.511 3.489 12 O -0.575 6.575 13 C 0.038 3.962 14 O -0.322 6.322 15 C 0.114 3.886 16 C -0.202 4.202 17 C -0.072 4.072 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.091 4.091 21 O -0.555 6.555 22 Si 0.996 3.004 23 H -0.253 1.253 24 H -0.278 1.278 25 H -0.245 1.245 26 C -0.145 4.145 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.422 0.578 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.137 0.863 50 H 0.118 0.882 51 H 0.389 0.611 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -0.927 -6.472 7.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.272 2.728 3 C -0.560 4.560 4 C -0.568 4.568 5 C -0.579 4.579 6 S -0.045 6.045 7 C -0.238 4.238 8 C -0.142 4.142 9 C 0.002 3.998 10 N -0.364 5.364 11 C 0.298 3.702 12 O -0.453 6.453 13 C -0.039 4.039 14 O -0.236 6.236 15 C 0.069 3.931 16 C -0.221 4.221 17 C -0.090 4.090 18 C -0.189 4.189 19 C -0.084 4.084 20 C -0.200 4.200 21 O -0.362 6.362 22 Si 0.819 3.181 23 H -0.177 1.177 24 H -0.203 1.203 25 H -0.168 1.168 26 C -0.164 4.164 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.260 0.740 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.179 0.821 48 H 0.177 0.823 49 H 0.154 0.846 50 H 0.136 0.864 51 H 0.238 0.762 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.083 -1.719 -6.326 7.723 hybrid contribution 0.400 1.056 0.664 1.310 sum -3.683 -0.663 -5.662 6.787 Atomic orbital electron populations 1.26254 1.21531 1.04420 1.04401 0.77876 0.65855 0.66028 0.63061 1.26140 1.06559 1.18324 1.05009 1.26270 1.06331 1.08269 1.15885 1.28235 1.09400 0.98945 1.21284 1.86855 1.74672 1.15252 1.27670 1.23356 1.03745 0.99570 0.97161 1.21406 1.02467 0.94230 0.96070 1.21303 0.98880 0.82241 0.97427 1.45642 1.52859 1.16945 1.20944 1.20577 0.80306 0.87654 0.81706 1.90771 1.38932 1.70527 1.45107 1.22719 1.02056 0.92517 0.86627 1.86122 1.70277 1.29135 1.38042 1.19213 0.95222 0.83956 0.94683 1.21620 1.01825 0.96847 1.01789 1.21291 0.97531 0.94307 0.95822 1.21242 1.00521 1.00946 0.96142 1.20207 0.97323 0.93792 0.97068 1.25252 1.03681 1.07076 0.84000 1.86501 1.27069 1.75221 1.47396 0.85024 0.80556 0.72928 0.79552 1.17733 1.20335 1.16809 1.20323 1.04097 0.96256 0.95687 0.91227 0.91097 0.91414 0.90883 0.90599 0.90854 0.91520 0.91054 0.91239 0.87998 0.88189 0.89620 0.89753 0.89415 0.89279 0.92002 0.92045 0.73957 0.85587 0.85609 0.82138 0.82314 0.84554 0.86399 0.76168 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.23 8.65 113.37 0.98 2.21 16 2 Si 1.08 -6.10 12.30 68.60 0.84 -5.26 16 3 C -0.45 2.23 8.65 113.37 0.98 3.21 16 4 C -0.46 1.15 8.65 113.37 0.98 2.13 16 5 C -0.39 1.49 5.14 113.37 0.58 2.07 16 6 S -0.27 0.18 20.84 -56.49 -1.18 -0.99 16 7 C -0.09 0.29 5.94 71.98 0.43 0.72 16 8 C -0.10 0.60 5.34 30.60 0.16 0.76 16 9 C 0.13 -0.29 5.67 86.38 0.49 0.20 16 10 N -0.71 2.86 5.56 -463.04 -2.57 0.28 16 11 C 0.51 1.77 7.91 87.65 0.69 2.46 16 12 O -0.57 -8.98 16.50 15.99 0.26 -8.72 16 13 C 0.04 -0.10 5.22 71.23 0.37 0.28 16 14 O -0.32 -2.36 9.67 -73.36 -0.71 -3.07 16 15 C 0.11 0.54 6.69 22.51 0.15 0.69 16 16 C -0.20 0.39 9.04 22.37 0.20 0.59 16 17 C -0.07 0.20 10.04 22.26 0.22 0.43 16 18 C -0.17 0.07 8.67 22.28 0.19 0.26 16 19 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 20 C -0.09 -0.11 2.80 71.24 0.20 0.09 16 21 O -0.55 -1.77 12.83 -148.98 -1.91 -3.68 16 22 Si 1.00 -1.24 25.14 68.60 1.72 0.48 16 23 H -0.25 0.20 7.11 99.48 0.71 0.90 16 24 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 25 H -0.24 0.61 7.04 99.48 0.70 1.31 16 26 C -0.14 -0.96 9.62 22.36 0.22 -0.74 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.06 7.96 -2.39 -0.02 -0.07 16 30 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 33 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 37 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 38 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.09 -0.61 8.14 -2.39 -0.02 -0.62 16 42 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.42 -4.96 8.47 -92.71 -0.79 -5.75 16 45 H 0.13 -1.14 7.65 -2.39 -0.02 -1.16 16 46 H 0.13 -1.14 7.67 -2.38 -0.02 -1.16 16 47 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 48 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 49 H 0.14 -0.51 4.86 -2.91 -0.01 -0.52 16 50 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 51 H 0.39 -1.49 8.70 -74.06 -0.64 -2.13 16 52 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -24.61 441.65 3.43 -21.18 By element: Atomic # 1 Polarization: -15.49 SS G_CDS: 0.22 Total: -15.26 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 6.75 Total: 15.03 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.57 Total: 0.28 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -2.36 Total: -15.46 kcal Atomic # 14 Polarization: -7.34 SS G_CDS: 2.57 Total: -4.77 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.18 Total: -0.99 kcal Total: -24.61 3.43 -21.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_4860298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.567 kcal (2) G-P(sol) polarization free energy of solvation -24.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds