Wall clock time and date at job start Tue Mar 9 2021 14:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37643 * 125.67356 * 2 1 4 4 C 1.46676 * 126.22409 * 0.02562 * 3 2 1 5 5 O 1.21695 * 119.99871 * 4.64813 * 4 3 2 6 6 N 1.34780 * 119.99963 * 184.65449 * 4 3 2 7 7 C 1.46496 * 120.00128 * 175.06181 * 6 4 3 8 8 C 1.53002 * 109.47197 * 180.27251 * 7 6 4 9 9 C 1.52998 * 109.47045 * 180.02562 * 8 7 6 10 10 S 1.81393 * 109.47072 * 180.02562 * 9 8 7 11 11 C 1.81402 * 103.00212 * 184.99557 * 10 9 8 12 12 Si 1.86292 * 109.47361 * 184.99577 * 11 10 9 13 13 C 1.86302 * 109.47242 * 55.04572 * 12 11 10 14 14 C 1.86299 * 109.47423 * 175.04821 * 12 11 10 15 15 C 1.86300 * 109.47323 * 295.04698 * 12 11 10 16 16 C 1.37887 * 107.55053 * 179.75653 * 3 2 1 17 17 C 1.39882 * 107.09017 * 0.24141 * 16 3 2 18 18 Br 1.89101 * 126.07218 * 180.02562 * 17 16 3 19 19 C 1.35499 * 107.85181 * 0.02562 * 17 16 3 20 20 C 1.50706 * 125.56937 * 180.02562 * 19 17 16 21 21 O 1.42897 * 109.47081 * 125.15664 * 20 19 17 22 22 Si 1.86309 * 109.46871 * 245.15465 * 20 19 17 23 23 H 1.48494 * 109.47024 * 64.87722 * 22 20 19 24 24 H 1.48500 * 109.46946 * 184.87629 * 22 20 19 25 25 H 1.48496 * 109.47018 * 304.87534 * 22 20 19 26 26 H 1.09009 * 109.47124 * 94.42055 * 1 2 3 27 27 H 1.09002 * 109.47115 * 214.41263 * 1 2 3 28 28 H 1.09000 * 109.47717 * 334.41675 * 1 2 3 29 29 H 0.97008 * 119.99695 * 355.33835 * 6 4 3 30 30 H 1.09003 * 109.47187 * 300.27584 * 7 6 4 31 31 H 1.09006 * 109.46904 * 60.27466 * 7 6 4 32 32 H 1.08995 * 109.47493 * 300.00533 * 8 7 6 33 33 H 1.09001 * 109.46777 * 60.00674 * 8 7 6 34 34 H 1.09003 * 109.47118 * 300.00197 * 9 8 7 35 35 H 1.08998 * 109.47282 * 59.99913 * 9 8 7 36 36 H 1.09005 * 109.47190 * 304.99643 * 11 10 9 37 37 H 1.09000 * 109.46576 * 64.99558 * 11 10 9 38 38 H 1.08999 * 109.46925 * 60.00050 * 13 12 11 39 39 H 1.09002 * 109.47410 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47357 * 300.00372 * 13 12 11 41 41 H 1.09002 * 109.46864 * 59.99666 * 14 12 11 42 42 H 1.08994 * 109.47509 * 180.02562 * 14 12 11 43 43 H 1.08999 * 109.46907 * 300.00051 * 14 12 11 44 44 H 1.09005 * 109.46898 * 65.00040 * 15 12 11 45 45 H 1.08998 * 109.47422 * 185.00394 * 15 12 11 46 46 H 1.08997 * 109.46938 * 305.00479 * 15 12 11 47 47 H 1.07999 * 126.45730 * 180.27227 * 16 3 2 48 48 H 1.08999 * 109.47040 * 5.15395 * 20 19 17 49 49 H 0.96705 * 113.99938 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2676 1.1181 0.0000 4 6 1.8119 2.5123 0.0005 5 8 0.6244 2.7642 0.0864 6 7 2.7083 3.5144 -0.0943 7 6 2.2482 4.9009 -0.2028 8 6 3.4573 5.8332 -0.3028 9 6 2.9767 7.2814 -0.4155 10 16 4.4101 8.3865 -0.5349 11 6 3.6570 10.0365 -0.5050 12 14 4.9749 11.3257 -0.7721 13 6 5.8926 10.9578 -2.3512 14 6 4.1831 13.0079 -0.8916 15 6 6.1672 11.3009 0.6592 16 6 3.5781 0.6892 0.0056 17 6 3.5529 -0.7093 0.0033 18 35 5.0610 -1.8501 0.0095 19 6 2.2559 -1.1014 -0.0040 20 6 1.7715 -2.5285 -0.0082 21 8 0.8779 -2.7314 1.0883 22 14 0.8815 -2.8775 -1.6073 23 1 1.8394 -2.7818 -2.7379 24 1 0.3025 -4.2443 -1.5634 25 1 -0.2067 -1.8847 -1.7950 26 1 -0.3634 -0.0792 -1.0247 27 1 -0.3633 -0.8478 0.5808 28 1 -0.3634 0.9269 0.4437 29 1 3.6581 3.3170 -0.0947 30 1 1.6304 5.0101 -1.0942 31 1 1.6621 5.1594 0.6793 32 1 4.0750 5.7240 0.5885 33 1 4.0432 5.5748 -1.1849 34 1 2.3587 7.3908 -1.3067 35 1 2.3909 7.5395 0.4667 36 1 2.9111 10.1099 -1.2966 37 1 3.1790 10.2002 0.4609 38 1 5.1950 10.9724 -3.1886 39 1 6.6634 11.7124 -2.5077 40 1 6.3559 9.9737 -2.2813 41 1 3.6462 13.2231 0.0323 42 1 4.9542 13.7621 -1.0483 43 1 3.4856 13.0224 -1.7290 44 1 6.6955 10.3476 0.6755 45 1 6.8859 12.1127 0.5475 46 1 5.6177 11.4278 1.5919 47 1 4.4582 1.3152 0.0112 48 1 2.6234 -3.2016 0.0880 49 1 0.5264 -3.6303 1.1481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_5000100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:40 Heat of formation + Delta-G solvation = -67.592678 kcal Electronic energy + Delta-G solvation = -26694.046655 eV Core-core repulsion = 22759.775699 eV Total energy + Delta-G solvation = -3934.270956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 422.061 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.85443 -40.43827 -37.79763 -37.00666 -34.63229 -33.84401 -32.15666 -30.99003 -29.96676 -28.85884 -28.33761 -28.29593 -28.06144 -27.38630 -26.07061 -23.16487 -22.82398 -21.54403 -20.40547 -18.89741 -18.61230 -17.53783 -17.23964 -17.12337 -16.72322 -16.57680 -16.02743 -15.59685 -15.37970 -14.96686 -14.85665 -14.73622 -14.61390 -14.43447 -14.37078 -14.29067 -14.09070 -13.93930 -13.81014 -13.75013 -13.53245 -13.26827 -13.22063 -13.11513 -13.07004 -12.98129 -12.78990 -12.52353 -12.29618 -12.07611 -12.04124 -11.87087 -11.37980 -11.27703 -11.11818 -10.77158 -10.73360 -10.68287 -10.60913 -10.31233 -9.80264 -9.26363 -8.56423 0.09971 0.61085 0.66975 0.84917 1.15550 1.33770 1.43607 1.46734 1.53763 1.81520 1.81771 1.96030 2.11072 2.12934 2.26033 2.65857 3.11873 3.50440 3.61035 3.77240 3.85297 3.88726 3.99577 4.04559 4.20069 4.32813 4.33277 4.35502 4.43092 4.53933 4.61445 4.63516 4.70590 4.79646 4.81191 4.82137 4.86401 4.87055 4.88901 4.96249 4.98708 5.05582 5.21910 5.31116 5.56418 5.60065 5.65461 5.67718 5.81617 6.33417 6.66865 6.98265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.394 5.394 3 C -0.057 4.057 4 C 0.591 3.409 5 O -0.577 6.577 6 N -0.704 5.704 7 C 0.131 3.869 8 C -0.106 4.106 9 C -0.087 4.087 10 S -0.274 6.274 11 C -0.386 4.386 12 Si 1.082 2.918 13 C -0.460 4.460 14 C -0.451 4.451 15 C -0.461 4.461 16 C -0.101 4.101 17 C -0.179 4.179 18 Br -0.015 7.015 19 C 0.083 3.917 20 C -0.062 4.062 21 O -0.555 6.555 22 Si 0.956 3.044 23 H -0.261 1.261 24 H -0.224 1.224 25 H -0.254 1.254 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.418 0.582 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.182 0.818 48 H 0.107 0.893 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 0.110 -1.002 1.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.067 5.067 3 C -0.171 4.171 4 C 0.379 3.621 5 O -0.459 6.459 6 N -0.356 5.356 7 C 0.006 3.994 8 C -0.144 4.144 9 C -0.236 4.236 10 S -0.048 6.048 11 C -0.578 4.578 12 Si 1.273 2.727 13 C -0.567 4.567 14 C -0.560 4.560 15 C -0.568 4.568 16 C -0.128 4.128 17 C -0.264 4.264 18 Br 0.069 6.931 19 C -0.039 4.039 20 C -0.172 4.172 21 O -0.365 6.365 22 Si 0.775 3.225 23 H -0.185 1.185 24 H -0.146 1.146 25 H -0.178 1.178 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.199 0.801 48 H 0.125 0.875 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.287 0.076 -1.675 1.701 hybrid contribution -1.201 -0.032 0.473 1.291 sum -0.914 0.043 -1.202 1.511 Atomic orbital electron populations 1.22728 0.74737 1.06832 1.04705 1.43881 1.07621 1.04100 1.51073 1.20101 0.90377 0.87727 1.18872 1.16951 0.85384 0.83783 0.75982 1.90784 1.17608 1.85123 1.52349 1.45506 1.10374 1.05887 1.73797 1.21343 0.96905 0.78836 1.02348 1.21420 0.97088 0.91179 1.04759 1.23332 0.98288 0.96345 1.05615 1.86920 1.17108 1.03047 1.97678 1.28227 1.17613 1.03534 1.08404 0.77857 0.63867 0.64911 0.66081 1.26270 1.08649 1.04996 1.16755 1.26131 1.07717 1.17171 1.04940 1.26280 1.11606 1.04282 1.14634 1.21519 0.95457 0.92985 1.02819 1.20893 0.91238 0.94950 1.19336 1.96654 1.35310 1.62849 1.98243 1.19960 0.89250 0.88761 1.05909 1.24418 0.99177 0.91650 1.01916 1.86415 1.63545 1.38066 1.48519 0.85646 0.79862 0.82334 0.74615 1.18546 1.14613 1.17751 0.89718 0.87143 0.88223 0.74446 0.91411 0.91530 0.89553 0.89542 0.89454 0.89533 0.87929 0.88117 0.91231 0.91150 0.91501 0.90826 0.90618 0.90834 0.91628 0.91052 0.91231 0.80071 0.87502 0.74135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.20 9.03 127.77 1.15 1.36 16 2 N -0.39 -2.38 3.13 -519.59 -1.62 -4.00 16 3 C -0.06 -0.31 6.89 40.35 0.28 -0.03 16 4 C 0.59 3.64 7.77 86.45 0.67 4.32 16 5 O -0.58 -7.26 14.57 -4.33 -0.06 -7.33 16 6 N -0.70 0.47 5.54 -467.07 -2.59 -2.12 16 7 C 0.13 -0.22 5.68 86.38 0.49 0.27 16 8 C -0.11 0.49 5.34 30.59 0.16 0.65 16 9 C -0.09 0.26 5.94 71.98 0.43 0.69 16 10 S -0.27 0.00 20.84 -56.49 -1.18 -1.18 16 11 C -0.39 1.40 5.14 113.37 0.58 1.98 16 12 Si 1.08 -5.70 12.30 68.60 0.84 -4.86 16 13 C -0.46 0.90 8.65 113.37 0.98 1.88 16 14 C -0.45 2.16 8.65 113.37 0.98 3.14 16 15 C -0.46 0.95 8.65 113.37 0.98 1.93 16 16 C -0.10 -0.22 10.34 22.58 0.23 0.01 16 17 C -0.18 -0.74 6.53 22.03 0.14 -0.60 16 18 Br -0.01 -0.03 33.06 -20.37 -0.67 -0.71 16 19 C 0.08 0.37 5.13 41.34 0.21 0.58 16 20 C -0.06 0.04 2.78 71.24 0.20 0.24 16 21 O -0.56 1.18 11.26 -148.98 -1.68 -0.50 16 22 Si 0.96 -1.52 27.07 68.60 1.86 0.34 16 23 H -0.26 -0.48 7.11 99.48 0.71 0.22 16 24 H -0.22 0.92 7.11 99.48 0.71 1.63 16 25 H -0.25 -0.07 5.52 99.48 0.55 0.48 16 26 H 0.08 0.23 6.81 -2.38 -0.02 0.21 16 27 H 0.11 0.14 6.40 -2.39 -0.02 0.13 16 28 H 0.10 0.69 5.99 -2.39 -0.01 0.68 16 29 H 0.42 -2.51 7.37 -92.70 -0.68 -3.19 16 30 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 37 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 39 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 40 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 41 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 44 H 0.06 0.00 7.96 -2.38 -0.02 -0.02 16 45 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 46 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 47 H 0.18 -0.77 7.45 -2.91 -0.02 -0.80 16 48 H 0.11 -0.32 6.96 -2.39 -0.02 -0.34 16 49 H 0.41 -4.76 8.74 -74.05 -0.65 -5.41 16 Total: 0.00 -17.39 430.19 2.62 -14.77 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: 0.22 Total: -10.83 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 7.50 Total: 16.40 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -4.21 Total: -6.12 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -1.74 Total: -7.82 kcal Atomic # 14 Polarization: -7.22 SS G_CDS: 2.70 Total: -4.52 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.18 Total: -1.18 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.67 Total: -0.71 kcal Total: -17.39 2.62 -14.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_5000100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.822 kcal (2) G-P(sol) polarization free energy of solvation -17.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds