Wall clock time and date at job start Tue Mar 9 2021 14:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35964 * 117.00141 * 2 1 4 4 C 1.39457 * 120.12248 * 180.02562 * 3 2 1 5 5 O 1.34773 * 133.24082 * 0.04476 * 4 3 2 6 6 C 1.34931 * 110.83840 * 179.97438 * 5 4 3 7 7 C 1.46990 * 125.14075 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00378 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99593 * 0.04466 * 7 6 5 10 10 C 1.46510 * 119.99604 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46854 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47160 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.47422 * 180.02562 * 12 11 10 14 14 C 1.81405 * 103.00128 * 175.57701 * 13 12 11 15 15 Si 1.86294 * 109.47016 * 184.42518 * 14 13 12 16 16 C 1.86300 * 109.47275 * 59.05023 * 15 14 13 17 17 C 1.86304 * 109.47018 * 179.05132 * 15 14 13 18 18 C 1.86304 * 109.47012 * 299.04890 * 15 14 13 19 19 C 1.35805 * 109.72035 * 359.97438 * 6 5 4 20 20 C 1.40605 * 119.13297 * 180.02562 * 4 3 2 21 21 C 1.39779 * 120.12602 * 0.03612 * 20 4 3 22 22 C 1.50698 * 120.09342 * 180.02562 * 21 20 4 23 23 O 1.42896 * 109.46874 * 74.98048 * 22 21 20 24 24 Si 1.86304 * 109.46950 * 194.97918 * 22 21 20 25 25 H 1.48496 * 109.47003 * 59.99839 * 24 22 21 26 26 H 1.48497 * 109.47032 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46919 * 300.00171 * 24 22 21 28 28 C 1.36628 * 119.81018 * 0.02562 * 21 20 4 29 29 C 1.38260 * 120.11947 * 0.36939 * 3 2 1 30 30 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47359 * 300.00057 * 1 2 3 32 32 H 1.09001 * 109.47353 * 59.99980 * 1 2 3 33 33 H 0.96995 * 120.00589 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47293 * 299.99972 * 10 9 7 35 35 H 1.09003 * 109.47038 * 60.00016 * 10 9 7 36 36 H 1.08992 * 109.47621 * 300.00351 * 11 10 9 37 37 H 1.09003 * 109.46812 * 60.00457 * 11 10 9 38 38 H 1.09006 * 109.47122 * 300.00780 * 12 11 10 39 39 H 1.09003 * 109.46833 * 60.00534 * 12 11 10 40 40 H 1.09000 * 109.47136 * 304.42421 * 14 13 12 41 41 H 1.08998 * 109.46787 * 64.42490 * 14 13 12 42 42 H 1.08998 * 109.47208 * 60.00297 * 16 15 14 43 43 H 1.08999 * 109.46692 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.47081 * 299.99952 * 16 15 14 45 45 H 1.08997 * 109.47168 * 60.00318 * 17 15 14 46 46 H 1.09000 * 109.47221 * 179.97438 * 17 15 14 47 47 H 1.08998 * 109.46800 * 299.99809 * 17 15 14 48 48 H 1.08998 * 109.47223 * 57.55759 * 18 15 14 49 49 H 1.09007 * 109.47318 * 177.55784 * 18 15 14 50 50 H 1.09003 * 109.47372 * 297.55917 * 18 15 14 51 51 H 1.08003 * 126.95860 * 180.02562 * 19 6 5 52 52 H 1.08998 * 109.47048 * 314.97740 * 22 21 20 53 53 H 0.96696 * 114.00290 * 60.00513 * 23 22 21 54 54 H 1.07997 * 119.75200 * 180.02562 * 28 21 20 55 55 H 1.08000 * 119.66479 * 359.94513 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4141 0.3573 -0.0019 6 6 5.6317 0.9387 -0.0024 7 6 6.9131 0.2185 -0.0033 8 8 7.9596 0.8389 -0.0033 9 7 6.9287 -1.1292 -0.0046 10 6 8.2059 -1.8470 -0.0060 11 6 7.9437 -3.3543 -0.0066 12 6 9.2774 -4.1039 -0.0088 13 16 8.9666 -5.8911 -0.0103 14 6 10.6328 -6.5950 -0.1491 15 14 10.5134 -8.4478 -0.3022 16 6 9.5025 -8.8828 -1.8054 17 6 12.2230 -9.1682 -0.4737 18 6 9.6954 -9.1452 1.2194 19 6 5.4944 2.2898 -0.0020 20 6 4.0554 2.5510 0.0000 21 6 3.2765 3.7117 0.0019 22 6 3.9382 5.0656 0.0019 23 8 4.4592 5.3411 -1.2999 24 14 2.6869 6.3683 0.4585 25 1 2.1454 6.0819 1.8112 26 1 3.3388 7.7025 0.4579 27 1 1.5791 6.3586 -0.5304 28 6 1.9137 3.6151 0.0037 29 6 1.2957 2.3726 0.0077 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 6.0943 -1.6239 -0.0045 34 1 8.7738 -1.5762 -0.8960 35 1 8.7749 -1.5778 0.8839 36 1 7.3759 -3.6247 0.8836 37 1 7.3745 -3.6237 -0.8964 38 1 9.8449 -3.8334 -0.8993 39 1 9.8470 -3.8346 0.8807 40 1 11.1266 -6.1885 -1.0317 41 1 11.2099 -6.3403 0.7398 42 1 9.9811 -8.4749 -2.6956 43 1 9.4324 -9.9669 -1.8946 44 1 8.5023 -8.4614 -1.7051 45 1 12.8144 -8.9137 0.4058 46 1 12.1532 -10.2523 -0.5628 47 1 12.7015 -8.7601 -1.3639 48 1 8.7123 -8.6913 1.3438 49 1 9.5863 -10.2244 1.1111 50 1 10.3091 -8.9281 2.0938 51 1 6.2873 3.0231 -0.0026 52 1 4.7513 5.0726 0.7277 53 1 3.7898 5.3508 -1.9976 54 1 1.3128 4.5125 0.0047 55 1 0.2174 2.3120 0.0128 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_6672420.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:19 Heat of formation + Delta-G solvation = -120.174189 kcal Electronic energy + Delta-G solvation = -33050.545503 eV Core-core repulsion = 28497.195550 eV Total energy + Delta-G solvation = -4553.349953 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 411.154 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.79172 -41.05627 -40.45150 -39.10142 -37.13297 -37.00955 -33.95818 -33.68509 -31.96175 -31.07460 -29.97685 -28.92107 -28.64397 -28.33791 -28.30794 -27.55565 -26.26434 -24.68885 -24.05983 -22.85343 -22.00938 -21.74380 -19.84036 -19.03727 -18.59472 -17.96055 -17.84482 -17.53371 -17.07442 -17.03418 -16.73178 -16.51076 -16.23120 -15.87053 -15.76057 -15.69792 -15.07270 -14.91406 -14.76963 -14.66616 -14.54936 -14.44773 -14.27318 -14.10174 -13.93474 -13.76650 -13.59867 -13.56077 -13.47397 -13.30957 -13.26478 -13.14119 -13.10394 -12.99302 -12.57192 -12.48498 -12.31378 -12.12569 -12.10015 -12.07857 -11.74541 -11.61670 -11.29816 -11.05245 -10.78742 -10.74603 -10.62479 -10.44538 -10.41880 -9.87023 -9.03788 -8.58993 -0.70988 0.05291 0.57676 0.64188 1.12544 1.18834 1.46167 1.51064 1.56891 1.79332 1.84348 1.87993 1.94620 1.94767 2.10487 2.13530 2.35984 2.64776 3.13667 3.40541 3.58872 3.66516 3.77094 3.81115 3.81750 3.84299 3.88550 4.00721 4.14638 4.29260 4.31133 4.32838 4.38986 4.41757 4.49236 4.52067 4.61179 4.73764 4.78482 4.80659 4.81005 4.81468 4.83058 4.85634 4.86116 4.87286 4.93362 4.95163 4.95487 5.00777 5.10250 5.17868 5.31532 5.54485 5.55677 5.64850 5.66140 6.12606 6.24524 6.71392 6.74537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.136 3.864 4 C 0.022 3.978 5 O -0.181 6.181 6 C -0.036 4.036 7 C 0.602 3.398 8 O -0.544 6.544 9 N -0.705 5.705 10 C 0.124 3.876 11 C -0.107 4.107 12 C -0.086 4.086 13 S -0.277 6.277 14 C -0.385 4.385 15 Si 1.080 2.920 16 C -0.460 4.460 17 C -0.449 4.449 18 C -0.462 4.462 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.103 4.103 22 C -0.087 4.087 23 O -0.552 6.552 24 Si 0.990 3.010 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.233 1.233 28 C -0.098 4.098 29 C -0.166 4.166 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.176 0.824 52 H 0.115 0.885 53 H 0.389 0.611 54 H 0.161 0.839 55 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -1.349 -0.176 5.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.090 3.910 4 C -0.026 4.026 5 O -0.083 6.083 6 C -0.086 4.086 7 C 0.388 3.612 8 O -0.424 6.424 9 N -0.356 5.356 10 C 0.000 4.000 11 C -0.146 4.146 12 C -0.235 4.235 13 S -0.051 6.051 14 C -0.577 4.577 15 Si 1.271 2.729 16 C -0.567 4.567 17 C -0.559 4.559 18 C -0.568 4.568 19 C -0.129 4.129 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.196 4.196 23 O -0.359 6.359 24 Si 0.811 3.189 25 H -0.177 1.177 26 H -0.201 1.201 27 H -0.156 1.156 28 C -0.116 4.116 29 C -0.185 4.185 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.194 0.806 52 H 0.133 0.867 53 H 0.238 0.762 54 H 0.178 0.822 55 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.317 -1.288 0.446 5.489 hybrid contribution 0.696 0.183 -0.414 0.830 sum -4.622 -1.105 0.032 4.752 Atomic orbital electron populations 1.23486 0.75339 1.06057 1.03116 1.86145 1.24300 1.25797 1.88457 1.17969 0.86161 0.86797 1.00044 1.19218 0.88214 0.87205 1.08002 1.84013 1.12727 1.35059 1.76537 1.21925 0.83952 0.92804 1.09905 1.16638 0.85066 0.82630 0.76870 1.90895 1.31371 1.68251 1.51872 1.45848 1.11571 1.05077 1.73088 1.21483 0.84444 0.90895 1.03189 1.21421 0.96738 0.91715 1.04691 1.23328 1.00625 0.93585 1.05932 1.86945 1.15044 1.05416 1.97673 1.28232 0.97855 1.23517 1.08078 0.77883 0.66910 0.61912 0.66147 1.26270 1.09600 1.05214 1.15612 1.26116 1.17396 1.07295 1.05053 1.26284 1.07784 1.06739 1.16012 1.22889 0.95351 0.94373 1.00244 1.19567 0.92414 0.92669 1.04944 1.19658 0.93359 0.94415 1.02929 1.25204 1.07426 0.97644 0.89322 1.86520 1.39261 1.93344 1.16745 0.85146 0.76615 0.75985 0.81107 1.17672 1.20105 1.15567 1.20876 0.93154 0.98810 0.98736 1.21357 1.01779 0.89661 1.05662 0.86561 0.90701 0.90685 0.74552 0.90745 0.90748 0.89843 0.89735 0.89193 0.89300 0.87856 0.88036 0.91184 0.91097 0.91594 0.90795 0.90581 0.90775 0.91682 0.91057 0.91177 0.80633 0.86731 0.76158 0.82217 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.09 10.50 -93.15 -0.98 -2.07 16 3 C 0.14 0.53 6.70 22.57 0.15 0.68 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -1.62 10.28 -13.41 -0.14 -1.75 16 6 C -0.04 -0.31 7.07 24.00 0.17 -0.14 16 7 C 0.60 5.27 7.80 86.54 0.67 5.94 16 8 O -0.54 -7.97 16.83 -4.19 -0.07 -8.04 16 9 N -0.71 -1.84 5.55 -466.78 -2.59 -4.43 16 10 C 0.12 0.00 5.67 86.38 0.49 0.49 16 11 C -0.11 0.28 5.34 30.59 0.16 0.45 16 12 C -0.09 0.17 5.94 71.98 0.43 0.59 16 13 S -0.28 -0.28 20.84 -56.49 -1.18 -1.46 16 14 C -0.38 1.17 5.14 113.37 0.58 1.75 16 15 Si 1.08 -5.14 12.30 68.60 0.84 -4.30 16 16 C -0.46 0.70 8.65 113.37 0.98 1.68 16 17 C -0.45 2.02 8.65 113.37 0.98 3.00 16 18 C -0.46 0.66 8.65 113.37 0.98 1.64 16 19 C -0.11 -0.89 10.68 23.79 0.25 -0.64 16 20 C -0.09 -0.64 6.16 -20.24 -0.12 -0.76 16 21 C -0.10 -0.19 5.26 -19.87 -0.10 -0.30 16 22 C -0.09 0.02 2.71 71.24 0.19 0.21 16 23 O -0.55 -0.79 12.88 -148.98 -1.92 -2.70 16 24 Si 0.99 -3.15 25.50 68.60 1.75 -1.41 16 25 H -0.25 0.57 7.11 99.48 0.71 1.28 16 26 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 27 H -0.23 1.41 6.74 99.48 0.67 2.08 16 28 C -0.10 0.20 8.62 22.02 0.19 0.39 16 29 C -0.17 0.33 9.03 22.40 0.20 0.53 16 30 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.07 -0.68 7.64 -2.39 -0.02 -0.70 16 32 H 0.07 -0.69 7.68 -2.39 -0.02 -0.70 16 33 H 0.42 -0.25 8.19 -92.71 -0.76 -1.01 16 34 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.10 -0.46 7.96 -2.39 -0.02 -0.48 16 41 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 42 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 43 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 44 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 45 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 46 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 47 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 48 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 49 H 0.07 -0.13 7.96 -2.38 -0.02 -0.14 16 50 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 51 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 52 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 53 H 0.39 -2.26 8.70 -74.06 -0.64 -2.90 16 54 H 0.16 -1.17 4.84 -2.91 -0.01 -1.18 16 55 H 0.18 -1.59 6.26 -2.91 -0.02 -1.61 16 Total: 0.00 -20.34 468.77 3.44 -16.90 By element: Atomic # 1 Polarization: -7.85 SS G_CDS: 0.22 Total: -7.63 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 7.49 Total: 16.90 kcal Atomic # 7 Polarization: -1.84 SS G_CDS: -2.59 Total: -4.43 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -3.11 Total: -14.57 kcal Atomic # 14 Polarization: -8.29 SS G_CDS: 2.59 Total: -5.70 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.18 Total: -1.46 kcal Total: -20.34 3.44 -16.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_6672420.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.275 kcal (2) G-P(sol) polarization free energy of solvation -20.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds