Wall clock time and date at job start Tue Mar 9 2021 14:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33822 * 122.44875 * 2 1 4 4 C 1.50698 * 124.52240 * 359.94972 * 3 2 1 5 5 O 1.42905 * 109.46911 * 113.86876 * 4 3 2 6 6 Si 1.86302 * 109.47283 * 233.87106 * 4 3 2 7 7 H 1.48497 * 109.47072 * 60.00426 * 6 4 3 8 8 H 1.48503 * 109.46682 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46895 * 300.00123 * 6 4 3 10 10 S 1.70613 * 110.95184 * 179.97438 * 3 2 1 11 11 C 1.75828 * 91.56674 * 359.97438 * 10 3 2 12 12 C 1.46583 * 125.45740 * 179.97438 * 11 10 3 13 13 O 1.21701 * 119.99803 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00335 * 0.02562 * 12 11 10 15 15 C 1.46493 * 120.00190 * 179.72430 * 14 12 11 16 16 C 1.52997 * 109.47381 * 180.27390 * 15 14 12 17 17 C 1.52992 * 109.47594 * 180.02562 * 16 15 14 18 18 S 1.81397 * 109.47711 * 180.02562 * 17 16 15 19 19 C 1.81394 * 103.00396 * 175.49010 * 18 17 16 20 20 Si 1.86305 * 109.47214 * 184.50914 * 19 18 17 21 21 C 1.86297 * 109.47176 * 60.77221 * 20 19 18 22 22 C 1.86302 * 109.46991 * 180.76942 * 20 19 18 23 23 C 1.86302 * 109.46953 * 300.76763 * 20 19 18 24 24 C 1.36651 * 109.08050 * 0.24087 * 11 10 3 25 25 H 1.08997 * 109.47549 * 84.81259 * 1 2 3 26 26 H 1.09002 * 109.47000 * 204.81904 * 1 2 3 27 27 H 1.09007 * 109.47167 * 324.81582 * 1 2 3 28 28 H 1.09001 * 109.47175 * 353.87267 * 4 3 2 29 29 H 0.96707 * 113.99384 * 60.00076 * 5 4 3 30 30 H 0.96999 * 119.99660 * 359.97438 * 14 12 11 31 31 H 1.08993 * 109.47173 * 300.27532 * 15 14 12 32 32 H 1.09003 * 109.47028 * 60.27168 * 15 14 12 33 33 H 1.09002 * 109.47041 * 299.99976 * 16 15 14 34 34 H 1.09003 * 109.47221 * 59.99896 * 16 15 14 35 35 H 1.09007 * 109.47276 * 300.00127 * 17 16 15 36 36 H 1.09003 * 109.47697 * 59.99727 * 17 16 15 37 37 H 1.09007 * 109.47131 * 304.50293 * 19 18 17 38 38 H 1.08997 * 109.47665 * 64.50485 * 19 18 17 39 39 H 1.08989 * 109.47528 * 59.99609 * 21 20 19 40 40 H 1.09000 * 109.47087 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46930 * 299.99929 * 21 20 19 42 42 H 1.08999 * 109.47222 * 60.00372 * 22 20 19 43 43 H 1.09008 * 109.46790 * 179.97438 * 22 20 19 44 44 H 1.08998 * 109.47246 * 299.99442 * 22 20 19 45 45 H 1.09004 * 109.46976 * 57.05480 * 23 20 19 46 46 H 1.08998 * 109.46974 * 177.05295 * 23 20 19 47 47 H 1.08993 * 109.47137 * 297.05876 * 23 20 19 48 48 H 1.08005 * 123.34632 * 179.75825 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 -0.0011 5 8 1.9500 3.1684 1.2309 6 14 2.3467 3.4922 -1.4197 7 1 2.0197 2.8145 -2.6999 8 1 1.7661 4.8590 -1.4203 9 1 3.8213 3.5812 -1.2692 10 16 3.8969 0.7892 0.0007 11 6 3.5937 -0.9427 0.0018 12 6 4.6231 -1.9862 0.0023 13 8 4.3002 -3.1596 0.0026 14 7 5.9273 -1.6463 0.0024 15 6 6.9561 -2.6891 0.0090 16 6 8.3411 -2.0392 0.0146 17 6 9.4156 -3.1283 0.0208 18 16 11.0578 -2.3577 0.0282 19 6 12.1750 -3.7793 0.1739 20 14 13.9301 -3.1758 0.3362 21 6 14.0872 -2.1277 1.8684 22 6 15.0799 -4.6363 0.4624 23 6 14.3784 -2.1600 -1.1598 24 6 2.2446 -1.1600 -0.0039 25 1 -0.3634 0.0929 -1.0234 26 1 -0.3633 -0.9328 0.4314 27 1 -0.3634 0.8400 0.5922 28 1 0.5530 2.4508 -0.1116 29 1 2.8983 3.2615 1.3957 30 1 6.1847 -0.7111 0.0018 31 1 6.8412 -3.3072 0.8993 32 1 6.8497 -3.3101 -0.8806 33 1 8.4560 -1.4211 -0.8759 34 1 8.4475 -1.4182 0.9041 35 1 9.3009 -3.7468 0.9110 36 1 9.3092 -3.7490 -0.8689 37 1 11.9083 -4.3622 1.0555 38 1 12.0864 -4.4039 -0.7150 39 1 13.8249 -2.7220 2.7436 40 1 15.1139 -1.7742 1.9631 41 1 13.4145 -1.2732 1.7946 42 1 14.9880 -5.2495 -0.4341 43 1 16.1068 -4.2831 0.5569 44 1 14.8177 -5.2306 1.3377 45 1 13.6734 -1.3350 -1.2633 46 1 15.3867 -1.7635 -1.0409 47 1 14.3371 -2.7870 -2.0503 48 1 1.8019 -2.1452 -0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310320_6739946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:33 Heat of formation + Delta-G solvation = -104.214364 kcal Electronic energy + Delta-G solvation = -24121.574622 eV Core-core repulsion = 20551.885650 eV Total energy + Delta-G solvation = -3569.688972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87796 -39.72429 -37.69210 -36.88386 -33.93349 -32.41495 -30.11042 -29.91501 -29.00215 -28.50598 -28.41433 -28.10403 -26.04842 -24.22889 -22.90377 -21.73982 -20.26068 -19.40920 -17.98358 -17.68790 -17.22526 -17.09045 -16.74911 -16.08369 -15.91486 -15.81689 -15.45352 -15.04323 -14.95433 -14.80277 -14.62039 -14.52265 -14.35470 -14.24246 -13.98267 -13.85658 -13.67566 -13.53537 -13.39994 -13.25375 -13.20629 -13.18690 -13.10381 -13.06909 -12.63974 -12.49409 -12.42810 -12.23633 -12.18868 -11.80720 -11.40626 -11.16979 -10.91694 -10.86545 -10.81899 -10.72891 -10.27239 -9.73315 -9.50137 -8.60722 -0.67786 0.25222 0.55927 0.65705 0.92005 1.21499 1.26019 1.36621 1.43027 1.67685 1.79192 1.79658 1.91642 2.02110 2.14942 2.51273 3.22545 3.48673 3.60371 3.70703 3.75002 3.91283 4.06006 4.15610 4.15895 4.26829 4.39940 4.41038 4.42764 4.56749 4.62036 4.63029 4.64667 4.66528 4.75326 4.76622 4.77317 4.79025 4.83965 4.85294 4.92577 4.94990 5.22251 5.23509 5.33780 5.38506 5.53517 5.56677 6.28333 6.28987 7.04908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C -0.232 4.232 4 C -0.048 4.048 5 O -0.531 6.531 6 Si 0.921 3.079 7 H -0.241 1.241 8 H -0.235 1.235 9 H -0.237 1.237 10 S 0.186 5.814 11 C -0.258 4.258 12 C 0.593 3.407 13 O -0.524 6.524 14 N -0.728 5.728 15 C 0.125 3.875 16 C -0.118 4.118 17 C -0.092 4.092 18 S -0.238 6.238 19 C -0.382 4.382 20 Si 1.021 2.979 21 C -0.446 4.446 22 C -0.442 4.442 23 C -0.446 4.446 24 C -0.044 4.044 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.375 0.625 30 H 0.399 0.601 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 1.894 -0.610 2.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.351 4.351 4 C -0.160 4.160 5 O -0.336 6.336 6 Si 0.740 3.260 7 H -0.164 1.164 8 H -0.158 1.158 9 H -0.160 1.160 10 S 0.455 5.545 11 C -0.378 4.378 12 C 0.379 3.621 13 O -0.401 6.401 14 N -0.380 5.380 15 C 0.000 4.000 16 C -0.157 4.157 17 C -0.240 4.240 18 S -0.012 6.012 19 C -0.575 4.575 20 Si 1.216 2.784 21 C -0.554 4.554 22 C -0.552 4.552 23 C -0.554 4.554 24 C -0.077 4.077 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.222 0.778 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.137 3.485 -1.329 4.874 hybrid contribution -1.225 -2.239 0.399 2.583 sum 1.912 1.247 -0.930 2.465 Atomic orbital electron populations 1.20637 0.88868 1.03693 1.02881 1.18696 0.98258 0.90710 1.02964 1.24454 0.98447 1.01013 1.11189 1.24597 1.05483 0.89510 0.96406 1.86590 1.29310 1.79216 1.38438 0.86088 0.81366 0.81108 0.77464 1.16365 1.15785 1.16005 1.82848 1.03491 0.98899 1.69275 1.24453 0.98017 0.96513 1.18856 1.16900 0.81499 0.87416 0.76272 1.90867 1.81588 1.18130 1.49553 1.45813 1.05473 1.10417 1.76272 1.21377 0.85267 0.90135 1.03243 1.21526 0.91817 0.97932 1.04377 1.23330 0.94621 1.00632 1.05464 1.86782 1.01204 1.15675 1.97514 1.28057 1.17492 1.04550 1.07391 0.78796 0.63775 0.67483 0.68342 1.26078 1.04608 1.09886 1.14800 1.26048 1.10585 1.13853 1.04675 1.26080 1.05412 1.09541 1.14400 1.20729 0.90859 1.00155 0.95978 0.90594 0.90809 0.90685 0.85175 0.77817 0.76619 0.90754 0.90751 0.90077 0.89982 0.89735 0.89733 0.88631 0.88706 0.91283 0.91167 0.90569 0.91103 0.90651 0.91102 0.90615 0.91130 0.91259 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 9.48 36.00 0.34 0.48 16 2 C -0.09 -0.05 5.78 -106.45 -0.62 -0.66 16 3 C -0.23 0.01 4.81 -35.86 -0.17 -0.17 16 4 C -0.05 0.05 2.77 36.00 0.10 0.15 16 5 O -0.53 0.19 12.88 -35.23 -0.45 -0.26 16 6 Si 0.92 -1.14 27.44 -169.99 -4.66 -5.80 16 7 H -0.24 0.06 7.11 56.52 0.40 0.46 16 8 H -0.24 0.06 7.11 56.52 0.40 0.46 16 9 H -0.24 0.36 7.11 56.52 0.40 0.76 16 10 S 0.19 -0.12 20.85 -107.50 -2.24 -2.37 16 11 C -0.26 -0.45 6.45 -36.79 -0.24 -0.68 16 12 C 0.59 1.80 7.78 -12.90 -0.10 1.70 16 13 O -0.52 -3.47 16.84 5.19 0.09 -3.38 16 14 N -0.73 -0.12 5.55 -61.66 -0.34 -0.46 16 15 C 0.12 -0.07 5.67 -4.05 -0.02 -0.09 16 16 C -0.12 0.23 5.34 -26.74 -0.14 0.08 16 17 C -0.09 0.12 5.94 37.15 0.22 0.34 16 18 S -0.24 0.01 20.84 -107.50 -2.24 -2.23 16 19 C -0.38 0.63 5.14 101.05 0.52 1.15 16 20 Si 1.02 -2.65 12.30 -169.99 -2.09 -4.75 16 21 C -0.45 0.55 8.65 101.05 0.87 1.43 16 22 C -0.44 0.93 8.65 101.05 0.87 1.80 16 23 C -0.45 0.52 8.65 101.05 0.87 1.40 16 24 C -0.04 -0.07 9.78 -40.44 -0.40 -0.47 16 25 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 26 H 0.07 -0.13 8.10 -51.93 -0.42 -0.55 16 27 H 0.07 -0.13 6.99 -51.92 -0.36 -0.49 16 28 H 0.13 -0.27 6.24 -51.93 -0.32 -0.60 16 29 H 0.37 -1.29 8.70 45.56 0.40 -0.89 16 30 H 0.40 -0.80 7.59 -40.82 -0.31 -1.10 16 31 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 33 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.08 -0.13 8.14 -51.92 -0.42 -0.56 16 36 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 37 H 0.09 -0.20 7.96 -51.92 -0.41 -0.62 16 38 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 39 H 0.07 -0.09 7.96 -51.94 -0.41 -0.50 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 43 H 0.07 -0.15 7.96 -51.92 -0.41 -0.56 16 44 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 45 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 46 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 47 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 48 H 0.16 0.20 8.06 -52.48 -0.42 -0.22 16 LS Contribution 423.20 15.07 6.38 6.38 Total: 0.00 -6.90 423.20 -11.20 -18.09 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -7.75 Total: -11.69 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 2.12 Total: 6.46 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -0.34 Total: -0.46 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.37 Total: -3.64 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: -6.75 Total: -10.55 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -4.48 Total: -4.59 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -6.90 -11.20 -18.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_6739946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.120 kcal (2) G-P(sol) polarization free energy of solvation -6.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds