Wall clock time and date at job start Tue Mar 9 2021 14:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33822 * 122.44875 * 2 1 4 4 C 1.50698 * 124.52240 * 359.94972 * 3 2 1 5 5 O 1.42905 * 109.46911 * 113.86876 * 4 3 2 6 6 Si 1.86302 * 109.47283 * 233.87106 * 4 3 2 7 7 H 1.48497 * 109.47072 * 60.00426 * 6 4 3 8 8 H 1.48503 * 109.46682 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46895 * 300.00123 * 6 4 3 10 10 S 1.70613 * 110.95184 * 179.97438 * 3 2 1 11 11 C 1.75828 * 91.56674 * 359.97438 * 10 3 2 12 12 C 1.46583 * 125.45740 * 179.97438 * 11 10 3 13 13 O 1.21701 * 119.99803 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00335 * 0.02562 * 12 11 10 15 15 C 1.46493 * 120.00190 * 179.72430 * 14 12 11 16 16 C 1.52997 * 109.47381 * 180.27390 * 15 14 12 17 17 C 1.52992 * 109.47594 * 180.02562 * 16 15 14 18 18 S 1.81397 * 109.47711 * 180.02562 * 17 16 15 19 19 C 1.81394 * 103.00396 * 175.49010 * 18 17 16 20 20 Si 1.86305 * 109.47214 * 184.50914 * 19 18 17 21 21 C 1.86297 * 109.47176 * 60.77221 * 20 19 18 22 22 C 1.86302 * 109.46991 * 180.76942 * 20 19 18 23 23 C 1.86302 * 109.46953 * 300.76763 * 20 19 18 24 24 C 1.36651 * 109.08050 * 0.24087 * 11 10 3 25 25 H 1.08997 * 109.47549 * 84.81259 * 1 2 3 26 26 H 1.09002 * 109.47000 * 204.81904 * 1 2 3 27 27 H 1.09007 * 109.47167 * 324.81582 * 1 2 3 28 28 H 1.09001 * 109.47175 * 353.87267 * 4 3 2 29 29 H 0.96707 * 113.99384 * 60.00076 * 5 4 3 30 30 H 0.96999 * 119.99660 * 359.97438 * 14 12 11 31 31 H 1.08993 * 109.47173 * 300.27532 * 15 14 12 32 32 H 1.09003 * 109.47028 * 60.27168 * 15 14 12 33 33 H 1.09002 * 109.47041 * 299.99976 * 16 15 14 34 34 H 1.09003 * 109.47221 * 59.99896 * 16 15 14 35 35 H 1.09007 * 109.47276 * 300.00127 * 17 16 15 36 36 H 1.09003 * 109.47697 * 59.99727 * 17 16 15 37 37 H 1.09007 * 109.47131 * 304.50293 * 19 18 17 38 38 H 1.08997 * 109.47665 * 64.50485 * 19 18 17 39 39 H 1.08989 * 109.47528 * 59.99609 * 21 20 19 40 40 H 1.09000 * 109.47087 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46930 * 299.99929 * 21 20 19 42 42 H 1.08999 * 109.47222 * 60.00372 * 22 20 19 43 43 H 1.09008 * 109.46790 * 179.97438 * 22 20 19 44 44 H 1.08998 * 109.47246 * 299.99442 * 22 20 19 45 45 H 1.09004 * 109.46976 * 57.05480 * 23 20 19 46 46 H 1.08998 * 109.46974 * 177.05295 * 23 20 19 47 47 H 1.08993 * 109.47137 * 297.05876 * 23 20 19 48 48 H 1.08005 * 123.34632 * 179.75825 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 -0.0011 5 8 1.9500 3.1684 1.2309 6 14 2.3467 3.4922 -1.4197 7 1 2.0197 2.8145 -2.6999 8 1 1.7661 4.8590 -1.4203 9 1 3.8213 3.5812 -1.2692 10 16 3.8969 0.7892 0.0007 11 6 3.5937 -0.9427 0.0018 12 6 4.6231 -1.9862 0.0023 13 8 4.3002 -3.1596 0.0026 14 7 5.9273 -1.6463 0.0024 15 6 6.9561 -2.6891 0.0090 16 6 8.3411 -2.0392 0.0146 17 6 9.4156 -3.1283 0.0208 18 16 11.0578 -2.3577 0.0282 19 6 12.1750 -3.7793 0.1739 20 14 13.9301 -3.1758 0.3362 21 6 14.0872 -2.1277 1.8684 22 6 15.0799 -4.6363 0.4624 23 6 14.3784 -2.1600 -1.1598 24 6 2.2446 -1.1600 -0.0039 25 1 -0.3634 0.0929 -1.0234 26 1 -0.3633 -0.9328 0.4314 27 1 -0.3634 0.8400 0.5922 28 1 0.5530 2.4508 -0.1116 29 1 2.8983 3.2615 1.3957 30 1 6.1847 -0.7111 0.0018 31 1 6.8412 -3.3072 0.8993 32 1 6.8497 -3.3101 -0.8806 33 1 8.4560 -1.4211 -0.8759 34 1 8.4475 -1.4182 0.9041 35 1 9.3009 -3.7468 0.9110 36 1 9.3092 -3.7490 -0.8689 37 1 11.9083 -4.3622 1.0555 38 1 12.0864 -4.4039 -0.7150 39 1 13.8249 -2.7220 2.7436 40 1 15.1139 -1.7742 1.9631 41 1 13.4145 -1.2732 1.7946 42 1 14.9880 -5.2495 -0.4341 43 1 16.1068 -4.2831 0.5569 44 1 14.8177 -5.2306 1.3377 45 1 13.6734 -1.3350 -1.2633 46 1 15.3867 -1.7635 -1.0409 47 1 14.3371 -2.7870 -2.0503 48 1 1.8019 -2.1452 -0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_6739946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:32 Heat of formation + Delta-G solvation = -97.389468 kcal Electronic energy + Delta-G solvation = -24121.278672 eV Core-core repulsion = 20551.885650 eV Total energy + Delta-G solvation = -3569.393022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04233 -39.73728 -37.64356 -36.97065 -33.98937 -32.41358 -29.97555 -29.84111 -28.88551 -28.34440 -28.30289 -28.09229 -26.01796 -24.23146 -22.86502 -21.84333 -20.25738 -19.44877 -17.99067 -17.68293 -17.23765 -17.09664 -16.78838 -16.08733 -15.92674 -15.79550 -15.49026 -14.97122 -14.87933 -14.72730 -14.58915 -14.44238 -14.33250 -14.09798 -13.93298 -13.75928 -13.56358 -13.46215 -13.27780 -13.18875 -13.11570 -13.09956 -13.02109 -12.98923 -12.57860 -12.44379 -12.36328 -12.20373 -12.11276 -11.75957 -11.43514 -11.28615 -10.78288 -10.76575 -10.74179 -10.62334 -10.40129 -9.75044 -9.47003 -8.58356 -0.74438 0.24126 0.64381 0.65065 0.97439 1.20038 1.35591 1.49533 1.51149 1.79680 1.86926 1.92837 1.95502 1.99100 2.13798 2.65071 3.35409 3.53921 3.60868 3.80985 3.83181 3.96077 4.05393 4.21630 4.30872 4.32736 4.43799 4.49962 4.52051 4.61087 4.75762 4.78794 4.80811 4.81529 4.82291 4.86029 4.86665 4.87749 4.93670 4.95701 4.97704 4.99736 5.17743 5.27921 5.37430 5.55950 5.65269 5.66638 6.22005 6.51528 6.90674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.104 4.104 3 C -0.236 4.236 4 C -0.047 4.047 5 O -0.544 6.544 6 Si 0.945 3.055 7 H -0.255 1.255 8 H -0.249 1.249 9 H -0.230 1.230 10 S 0.232 5.768 11 C -0.283 4.283 12 C 0.590 3.410 13 O -0.569 6.569 14 N -0.716 5.716 15 C 0.126 3.874 16 C -0.106 4.106 17 C -0.088 4.088 18 S -0.273 6.273 19 C -0.386 4.386 20 Si 1.084 2.916 21 C -0.461 4.461 22 C -0.451 4.451 23 C -0.462 4.462 24 C -0.053 4.053 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.387 0.613 30 H 0.411 0.589 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 2.555 -0.514 3.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.356 4.356 4 C -0.159 4.159 5 O -0.350 6.350 6 Si 0.765 3.235 7 H -0.179 1.179 8 H -0.172 1.172 9 H -0.152 1.152 10 S 0.501 5.499 11 C -0.403 4.403 12 C 0.377 3.623 13 O -0.451 6.451 14 N -0.367 5.367 15 C 0.002 3.998 16 C -0.145 4.145 17 C -0.236 4.236 18 S -0.047 6.047 19 C -0.578 4.578 20 Si 1.274 2.726 21 C -0.567 4.567 22 C -0.560 4.560 23 C -0.568 4.568 24 C -0.088 4.088 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.158 0.842 29 H 0.236 0.764 30 H 0.247 0.753 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.603 4.191 -1.226 5.661 hybrid contribution -1.332 -2.391 0.366 2.761 sum 2.271 1.801 -0.860 3.023 Atomic orbital electron populations 1.20692 0.87741 1.04027 1.03672 1.18851 0.99230 0.90395 1.03238 1.24736 0.99003 1.01460 1.10407 1.24677 1.06189 0.88704 0.96295 1.86566 1.30697 1.79158 1.38622 0.85752 0.81507 0.79850 0.76394 1.17901 1.17206 1.15236 1.82579 1.02763 0.96397 1.68125 1.24472 0.97864 0.97919 1.20075 1.17147 0.82394 0.87100 0.75667 1.90832 1.82359 1.19916 1.51954 1.45762 1.04806 1.11283 1.74896 1.21380 0.85766 0.90031 1.02664 1.21429 0.90572 0.97694 1.04816 1.23330 0.93840 1.00664 1.05762 1.86889 1.02704 1.17449 1.97612 1.28238 1.17512 1.04006 1.08029 0.77835 0.62570 0.66039 0.66125 1.26272 1.04412 1.10027 1.16021 1.26135 1.10746 1.14154 1.04947 1.26284 1.05262 1.09682 1.15614 1.20836 0.91177 1.00477 0.96267 0.89582 0.90685 0.90116 0.84248 0.76384 0.75270 0.91368 0.91377 0.89645 0.89492 0.89397 0.89509 0.87922 0.88107 0.91206 0.91110 0.91486 0.90856 0.90610 0.90820 0.91587 0.91081 0.91222 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.29 9.48 71.24 0.68 0.96 16 2 C -0.10 -0.12 5.78 -21.05 -0.12 -0.25 16 3 C -0.24 0.12 4.81 24.68 0.12 0.24 16 4 C -0.05 0.14 2.77 71.24 0.20 0.34 16 5 O -0.54 0.94 12.88 -148.98 -1.92 -0.98 16 6 Si 0.95 -2.98 27.44 68.60 1.88 -1.10 16 7 H -0.26 0.18 7.11 99.48 0.71 0.89 16 8 H -0.25 0.21 7.11 99.48 0.71 0.92 16 9 H -0.23 1.03 7.11 99.48 0.71 1.74 16 10 S 0.23 -0.43 20.85 -56.49 -1.18 -1.61 16 11 C -0.28 -1.20 6.45 24.08 0.16 -1.04 16 12 C 0.59 4.32 7.78 86.42 0.67 4.99 16 13 O -0.57 -8.72 16.84 -4.35 -0.07 -8.80 16 14 N -0.72 -0.57 5.55 -467.20 -2.59 -3.16 16 15 C 0.13 -0.06 5.67 86.38 0.49 0.43 16 16 C -0.11 0.42 5.34 30.59 0.16 0.58 16 17 C -0.09 0.23 5.94 71.98 0.43 0.66 16 18 S -0.27 0.01 20.84 -56.49 -1.18 -1.16 16 19 C -0.39 1.43 5.14 113.37 0.58 2.01 16 20 Si 1.08 -5.91 12.30 68.60 0.84 -5.07 16 21 C -0.46 1.07 8.65 113.37 0.98 2.05 16 22 C -0.45 2.21 8.65 113.37 0.98 3.19 16 23 C -0.46 0.98 8.65 113.37 0.98 1.96 16 24 C -0.05 -0.23 9.78 21.72 0.21 -0.02 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.07 -0.23 8.10 -2.39 -0.02 -0.25 16 27 H 0.08 -0.32 6.99 -2.38 -0.02 -0.33 16 28 H 0.14 -0.70 6.24 -2.39 -0.01 -0.72 16 29 H 0.39 -3.12 8.70 -74.05 -0.64 -3.77 16 30 H 0.41 -1.74 7.59 -92.71 -0.70 -2.44 16 31 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.09 -0.29 8.14 -2.39 -0.02 -0.30 16 36 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 38 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 39 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 41 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 44 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 45 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 46 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 47 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 48 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 Total: 0.00 -16.45 423.20 2.66 -13.79 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: 0.35 Total: -8.01 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.52 Total: 16.10 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -2.59 Total: -3.16 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.99 Total: -9.78 kcal Atomic # 14 Polarization: -8.89 SS G_CDS: 2.73 Total: -6.17 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.36 Total: -2.77 kcal Total: -16.45 2.66 -13.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_6739946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.599 kcal (2) G-P(sol) polarization free energy of solvation -16.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds