Wall clock time and date at job start Tue Mar 9 2021 14:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47158 * 2 1 4 4 C 1.86301 * 109.47320 * 239.99847 * 2 1 3 5 5 C 1.86303 * 109.47030 * 119.99979 * 2 1 3 6 6 S 1.81396 * 109.47234 * 59.05102 * 5 2 1 7 7 C 1.81401 * 103.00137 * 184.42248 * 6 5 2 8 8 C 1.53001 * 109.47247 * 175.57450 * 7 6 5 9 9 C 1.53001 * 109.47049 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46781 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99813 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00190 * 180.02562 * 11 10 9 14 14 N 1.46504 * 109.47406 * 179.97438 * 13 11 10 15 15 C 1.36831 * 125.06607 * 264.97842 * 14 13 11 16 16 C 1.34238 * 109.93564 * 180.02562 * 15 14 13 17 17 C 1.50700 * 126.49877 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47269 * 104.97557 * 17 16 15 19 19 Si 1.86299 * 109.47101 * 344.97786 * 17 16 15 20 20 H 1.48501 * 109.47600 * 59.99600 * 19 17 16 21 21 H 1.48496 * 109.47503 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47243 * 300.00154 * 19 17 16 23 23 C 1.46492 * 107.00186 * 359.78127 * 16 15 14 24 24 C 1.39591 * 134.03146 * 179.57743 * 23 16 15 25 25 C 1.36657 * 119.76257 * 180.37346 * 24 23 16 26 26 C 1.38788 * 120.52951 * 0.25383 * 25 24 23 27 27 C 1.37788 * 120.66591 * 359.97438 * 26 25 24 28 28 C 1.37691 * 125.05551 * 85.00336 * 14 13 11 29 29 H 1.08995 * 109.47192 * 300.00140 * 1 2 3 30 30 H 1.08996 * 109.47285 * 60.00132 * 1 2 3 31 31 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47114 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46895 * 300.00209 * 3 2 1 34 34 H 1.09004 * 109.47023 * 59.99688 * 3 2 1 35 35 H 1.09000 * 109.47084 * 297.55791 * 4 2 1 36 36 H 1.09009 * 109.46940 * 57.55607 * 4 2 1 37 37 H 1.08994 * 109.47198 * 177.55250 * 4 2 1 38 38 H 1.09003 * 109.46910 * 299.05065 * 5 2 1 39 39 H 1.08998 * 109.47093 * 179.05007 * 5 2 1 40 40 H 1.09005 * 109.46941 * 55.57661 * 7 6 5 41 41 H 1.08996 * 109.47247 * 295.57808 * 7 6 5 42 42 H 1.08997 * 109.46980 * 59.99586 * 8 7 6 43 43 H 1.09003 * 109.47218 * 299.99938 * 8 7 6 44 44 H 1.08997 * 109.47132 * 59.99945 * 9 8 7 45 45 H 1.09003 * 109.46973 * 299.99982 * 9 8 7 46 46 H 0.97000 * 120.00419 * 0.02562 * 10 9 8 47 47 H 1.09005 * 109.46911 * 60.00255 * 13 11 10 48 48 H 1.08996 * 109.47248 * 300.00420 * 13 11 10 49 49 H 1.07995 * 125.03057 * 0.04261 * 15 14 13 50 50 H 1.08996 * 109.47291 * 224.97939 * 17 16 15 51 51 H 0.96710 * 113.99898 * 300.00355 * 18 17 16 52 52 H 1.07997 * 120.11667 * 0.65343 * 24 23 16 53 53 H 1.08005 * 119.73716 * 180.27638 * 25 24 23 54 54 H 1.07996 * 119.67030 * 179.97438 * 26 25 24 55 55 H 1.08007 * 120.11383 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 16 1.8563 -2.5801 1.5354 7 6 2.4435 -3.2183 3.1287 8 6 1.8966 -4.6307 3.3452 9 6 2.3914 -5.1687 4.6893 10 7 1.8671 -6.5209 4.8969 11 6 2.1744 -7.1975 6.0212 12 8 2.8846 -6.6868 6.8614 13 6 1.6357 -8.5886 6.2345 14 7 2.1103 -9.1043 7.5211 15 6 3.2169 -9.8905 7.6929 16 6 3.3699 -10.1876 8.9930 17 6 4.4645 -11.0288 9.5975 18 8 5.4042 -10.1819 10.2620 19 14 5.3309 -11.9814 8.2511 20 1 5.9194 -11.0318 7.2728 21 1 6.4098 -12.8099 8.8466 22 1 4.3543 -12.8616 7.5605 23 6 2.2744 -9.5343 9.7135 24 6 1.8938 -9.4767 11.0552 25 6 0.7833 -8.7664 11.4155 26 6 0.0274 -8.1057 10.4572 27 6 0.3824 -8.1532 9.1267 28 6 1.5089 -8.8702 8.7373 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1206 2.2703 0.8900 35 1 2.1569 -1.9178 -1.4995 36 1 2.0854 -0.3903 -2.4106 37 1 3.5731 -0.8404 -1.5433 38 1 2.1346 -0.3546 2.4111 39 1 3.5738 -0.8930 1.5127 40 1 2.0963 -2.5673 3.9311 41 1 3.5331 -3.2465 3.1295 42 1 2.2437 -5.2817 2.5428 43 1 0.8069 -4.6025 3.3445 44 1 2.0439 -4.5176 5.4914 45 1 3.4810 -5.1969 4.6905 46 1 1.2995 -6.9295 4.2248 47 1 1.9829 -9.2397 5.4322 48 1 0.5461 -8.5604 6.2336 49 1 3.8706 -10.2226 6.9000 50 1 4.0325 -11.7259 10.3154 51 1 5.8288 -9.5346 9.6823 52 1 2.4774 -9.9880 11.8065 53 1 0.4917 -8.7185 12.4543 54 1 -0.8478 -7.5488 10.7573 55 1 -0.2125 -7.6361 8.3883 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:21:42 Heat of formation + Delta-G solvation = -53.097774 kcal Electronic energy + Delta-G solvation = -30740.501940 eV Core-core repulsion = 26606.461493 eV Total energy + Delta-G solvation = -4134.040447 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 394.166 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54886 -40.70360 -38.11983 -37.68178 -36.92651 -34.27031 -33.67316 -31.47049 -30.25415 -29.99230 -29.32370 -28.76383 -28.34732 -28.31262 -27.15660 -25.52684 -23.76154 -22.92759 -22.64544 -21.63484 -20.67551 -18.71070 -18.42372 -17.89655 -17.48318 -17.18037 -16.99427 -16.55347 -16.39148 -16.11577 -16.00831 -15.58466 -15.47989 -14.96609 -14.86977 -14.78892 -14.70171 -14.53958 -14.43492 -14.34128 -14.10964 -14.02910 -13.76412 -13.68622 -13.58110 -13.26807 -13.18448 -13.12951 -13.10236 -13.00033 -12.71658 -12.57636 -12.55143 -12.34070 -12.15466 -12.09698 -11.90843 -11.68674 -11.34475 -11.22911 -10.79684 -10.75270 -10.64249 -10.55684 -10.28280 -10.27361 -9.17119 -8.64154 -8.59815 0.13246 0.61024 0.66269 1.21800 1.37574 1.40531 1.48227 1.49798 1.57974 1.68069 1.78575 1.94314 1.94807 2.09879 2.20157 2.63735 2.95213 3.53534 3.63493 3.64671 3.72197 3.79959 3.82430 3.86624 3.97775 4.03838 4.11822 4.21970 4.29045 4.29899 4.31209 4.51331 4.51676 4.59936 4.61869 4.71606 4.77146 4.78593 4.79654 4.80101 4.85010 4.85668 4.86918 4.90144 4.94263 4.95100 5.02444 5.14033 5.26485 5.50684 5.54784 5.64087 5.65751 5.66410 5.73520 5.74846 6.16001 6.22237 6.41743 6.74930 7.07111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.082 2.918 3 C -0.452 4.452 4 C -0.461 4.461 5 C -0.387 4.387 6 S -0.271 6.271 7 C -0.090 4.090 8 C -0.103 4.103 9 C 0.129 3.871 10 N -0.712 5.712 11 C 0.490 3.510 12 O -0.573 6.573 13 C 0.088 3.912 14 N -0.468 5.468 15 C 0.062 3.938 16 C -0.217 4.217 17 C -0.053 4.053 18 O -0.560 6.560 19 Si 0.992 3.008 20 H -0.247 1.247 21 H -0.273 1.273 22 H -0.249 1.249 23 C -0.115 4.115 24 C -0.085 4.085 25 C -0.154 4.154 26 C -0.106 4.106 27 C -0.136 4.136 28 C 0.090 3.910 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.421 0.579 47 H 0.162 0.838 48 H 0.145 0.855 49 H 0.192 0.808 50 H 0.110 0.890 51 H 0.384 0.616 52 H 0.123 0.877 53 H 0.138 0.862 54 H 0.145 0.855 55 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 0.774 -7.188 7.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.273 2.727 3 C -0.560 4.560 4 C -0.568 4.568 5 C -0.579 4.579 6 S -0.044 6.044 7 C -0.238 4.238 8 C -0.141 4.141 9 C 0.003 3.997 10 N -0.366 5.366 11 C 0.276 3.724 12 O -0.451 6.451 13 C -0.037 4.037 14 N -0.150 5.150 15 C -0.063 4.063 16 C -0.225 4.225 17 C -0.162 4.162 18 O -0.367 6.367 19 Si 0.813 3.187 20 H -0.171 1.171 21 H -0.197 1.197 22 H -0.172 1.172 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.173 4.173 26 C -0.125 4.125 27 C -0.156 4.156 28 C -0.015 4.015 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.259 0.741 47 H 0.179 0.821 48 H 0.163 0.837 49 H 0.209 0.791 50 H 0.128 0.872 51 H 0.232 0.768 52 H 0.141 0.859 53 H 0.156 0.844 54 H 0.163 0.837 55 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.805 -0.107 -7.793 8.283 hybrid contribution 0.556 1.264 0.904 1.650 sum -2.249 1.157 -6.889 7.338 Atomic orbital electron populations 1.26260 1.21567 1.04415 1.04405 0.77860 0.65817 0.66014 0.63031 1.26143 1.06560 1.18334 1.05010 1.26274 1.06340 1.08270 1.15891 1.28237 1.09395 0.98968 1.21291 1.86856 1.74686 1.15233 1.27636 1.23352 1.03683 0.99647 0.97124 1.21403 1.02368 0.94158 0.96215 1.21231 0.98683 0.82669 0.97116 1.45792 1.52713 1.16807 1.21273 1.21462 0.80599 0.88795 0.81573 1.90805 1.38938 1.70464 1.44891 1.21975 1.03596 0.92445 0.85675 1.43418 1.23343 1.43022 1.05241 1.21988 0.90588 0.95983 0.97788 1.20852 1.00625 1.08274 0.92724 1.24529 0.90028 0.95972 1.05703 1.86462 1.57675 1.52003 1.40526 0.85165 0.78883 0.78651 0.75970 1.17054 1.19747 1.17241 1.19330 0.96958 1.02029 0.93562 1.20481 0.96860 0.98951 0.94066 1.20933 0.96135 0.99625 1.00565 1.21136 1.00297 0.99286 0.91822 1.20242 0.96301 1.01803 0.97300 1.18430 0.96878 1.01101 0.85130 0.91235 0.91090 0.91420 0.90880 0.90584 0.90872 0.91516 0.91044 0.91225 0.88042 0.88194 0.89796 0.89827 0.89426 0.89427 0.92477 0.92259 0.74066 0.82056 0.83723 0.79130 0.87216 0.76789 0.85883 0.84432 0.83701 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.31 8.65 113.37 0.98 2.29 16 2 Si 1.08 -6.37 12.30 68.60 0.84 -5.52 16 3 C -0.45 2.32 8.65 113.37 0.98 3.30 16 4 C -0.46 1.27 8.65 113.37 0.98 2.25 16 5 C -0.39 1.59 5.14 113.37 0.58 2.17 16 6 S -0.27 0.27 20.84 -56.49 -1.18 -0.91 16 7 C -0.09 0.33 5.94 71.98 0.43 0.76 16 8 C -0.10 0.67 5.34 30.60 0.16 0.83 16 9 C 0.13 -0.45 5.67 86.38 0.49 0.04 16 10 N -0.71 4.39 5.56 -463.06 -2.57 1.82 16 11 C 0.49 -0.02 7.90 87.66 0.69 0.67 16 12 O -0.57 -6.76 16.42 -3.05 -0.05 -6.82 16 13 C 0.09 -0.53 6.48 85.63 0.56 0.03 16 14 N -0.47 -1.38 2.27 -519.99 -1.18 -2.56 16 15 C 0.06 0.17 9.89 83.00 0.82 0.99 16 16 C -0.22 -1.40 5.57 -18.63 -0.10 -1.51 16 17 C -0.05 -0.20 3.06 71.24 0.22 0.02 16 18 O -0.56 -3.65 12.88 -148.98 -1.92 -5.56 16 19 Si 0.99 -0.33 26.08 68.60 1.79 1.46 16 20 H -0.25 0.42 7.03 99.48 0.70 1.12 16 21 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 22 H -0.25 0.16 7.11 99.48 0.71 0.86 16 23 C -0.11 -1.18 6.35 -20.20 -0.13 -1.31 16 24 C -0.09 -0.80 10.05 22.23 0.22 -0.58 16 25 C -0.15 -1.02 9.97 22.03 0.22 -0.80 16 26 C -0.11 -0.55 10.01 22.29 0.22 -0.33 16 27 C -0.14 -0.80 10.00 22.37 0.22 -0.57 16 28 C 0.09 0.72 6.80 39.03 0.27 0.99 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.08 -0.37 7.96 -2.38 -0.02 -0.39 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 35 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 36 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 37 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 38 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 39 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 40 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 41 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.42 -5.67 8.47 -92.71 -0.79 -6.45 16 47 H 0.16 -2.26 8.12 -2.38 -0.02 -2.28 16 48 H 0.15 -1.62 8.14 -2.39 -0.02 -1.64 16 49 H 0.19 -0.74 6.29 -2.91 -0.02 -0.75 16 50 H 0.11 0.36 7.96 -2.39 -0.02 0.34 16 51 H 0.38 0.33 8.70 -74.05 -0.64 -0.31 16 52 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 53 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 54 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 55 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -25.89 468.10 3.74 -22.15 By element: Atomic # 1 Polarization: -13.50 SS G_CDS: 0.19 Total: -13.31 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 7.82 Total: 9.25 kcal Atomic # 7 Polarization: 3.01 SS G_CDS: -3.75 Total: -0.75 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.97 Total: -12.38 kcal Atomic # 14 Polarization: -6.69 SS G_CDS: 2.63 Total: -4.06 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.18 Total: -0.91 kcal Total: -25.89 3.74 -22.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.948 kcal (2) G-P(sol) polarization free energy of solvation -25.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds