Wall clock time and date at job start Tue Mar 9 2021 14:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86300 * 109.46808 * 2 1 4 4 C 1.86301 * 109.46972 * 239.99870 * 2 1 3 5 5 C 1.86300 * 109.47045 * 119.99900 * 2 1 3 6 6 S 1.81401 * 109.46984 * 59.05017 * 5 2 1 7 7 C 1.81399 * 102.99557 * 184.42104 * 6 5 2 8 8 C 1.53008 * 109.46764 * 175.57657 * 7 6 5 9 9 N 1.46505 * 109.47029 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00102 * 180.02562 * 9 8 7 11 11 O 1.21700 * 119.99924 * 359.97438 * 10 9 8 12 12 C 1.46433 * 120.00209 * 180.02562 * 10 9 8 13 13 C 1.34804 * 120.00059 * 180.02562 * 12 10 9 14 14 C 1.47210 * 120.00110 * 179.97438 * 13 12 10 15 15 C 1.39844 * 120.16482 * 0.31002 * 14 13 12 16 16 C 1.37891 * 119.82110 * 180.23153 * 15 14 13 17 17 C 1.38402 * 120.17022 * 359.47432 * 16 15 14 18 18 C 1.50705 * 119.82689 * 180.27693 * 17 16 15 19 19 O 1.42904 * 109.46933 * 64.99929 * 18 17 16 20 20 Si 1.86301 * 109.46996 * 185.00101 * 18 17 16 21 21 H 1.48497 * 109.47227 * 299.99446 * 20 18 17 22 22 H 1.48492 * 109.47028 * 60.00084 * 20 18 17 23 23 H 1.48503 * 109.46744 * 179.97438 * 20 18 17 24 24 C 1.38403 * 120.34846 * 0.25343 * 17 16 15 25 25 C 1.37894 * 120.16756 * 0.02562 * 24 17 16 26 26 H 1.08993 * 109.47018 * 299.99894 * 1 2 3 27 27 H 1.09002 * 109.47221 * 60.00377 * 1 2 3 28 28 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46786 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46921 * 299.99807 * 3 2 1 31 31 H 1.08993 * 109.47244 * 60.00245 * 3 2 1 32 32 H 1.08992 * 109.47700 * 297.55612 * 4 2 1 33 33 H 1.09001 * 109.47435 * 57.55774 * 4 2 1 34 34 H 1.09003 * 109.46841 * 177.55498 * 4 2 1 35 35 H 1.08996 * 109.46767 * 299.04812 * 5 2 1 36 36 H 1.09000 * 109.46675 * 179.05064 * 5 2 1 37 37 H 1.09001 * 109.47377 * 55.58020 * 7 6 5 38 38 H 1.08998 * 109.47343 * 295.57390 * 7 6 5 39 39 H 1.09000 * 109.47317 * 60.00361 * 8 7 6 40 40 H 1.08998 * 109.46973 * 299.99960 * 8 7 6 41 41 H 0.97005 * 119.99474 * 0.02562 * 9 8 7 42 42 H 1.07997 * 119.99764 * 359.97438 * 12 10 9 43 43 H 1.07997 * 120.00177 * 359.97438 * 13 12 10 44 44 H 1.07997 * 120.08873 * 0.02562 * 15 14 13 45 45 H 1.07991 * 119.91514 * 179.75400 * 16 15 14 46 46 H 1.09001 * 109.46734 * 304.99833 * 18 17 16 47 47 H 0.96701 * 113.99338 * 180.02562 * 19 18 17 48 48 H 1.08001 * 119.91730 * 180.02562 * 24 17 16 49 49 H 1.07996 * 120.08616 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 16 1.8563 -2.5801 1.5354 7 6 2.4436 -3.2182 3.1286 8 6 1.8966 -4.6307 3.3451 9 7 2.3704 -5.1458 4.6322 10 6 2.0128 -6.3807 5.0366 11 8 1.2959 -7.0676 4.3329 12 6 2.4859 -6.8954 6.3233 13 6 2.1286 -8.1308 6.7275 14 6 2.6046 -8.6485 8.0208 15 6 3.4224 -7.8592 8.8356 16 6 3.8681 -8.3530 10.0434 17 6 3.4994 -9.6220 10.4548 18 6 3.9860 -10.1516 11.7792 19 8 3.4329 -9.3672 12.8380 20 14 3.4489 -11.9248 11.9740 21 1 1.9668 -12.0014 11.9248 22 1 4.0236 -12.7397 10.8737 23 1 3.9290 -12.4468 13.2788 24 6 2.6857 -10.4070 9.6565 25 6 2.2365 -9.9295 8.4434 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 2.1570 -1.9177 -1.4996 33 1 2.0854 -0.3904 -2.4106 34 1 3.5732 -0.8405 -1.5433 35 1 2.1347 -0.3546 2.4110 36 1 3.5739 -0.8929 1.5126 37 1 2.0964 -2.5672 3.9310 38 1 3.5332 -3.2465 3.1294 39 1 2.2438 -5.2817 2.5428 40 1 0.8070 -4.6024 3.3444 41 1 2.9415 -4.5981 5.1932 42 1 3.1217 -6.2856 6.9479 43 1 1.4931 -8.7407 6.1027 44 1 3.7067 -6.8668 8.5182 45 1 4.5029 -7.7463 10.6720 46 1 5.0739 -10.0953 11.8153 47 1 3.7045 -9.6518 13.7214 48 1 2.4019 -11.3961 9.9846 49 1 1.6013 -10.5430 7.8218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:48:20 Heat of formation + Delta-G solvation = -79.231701 kcal Electronic energy + Delta-G solvation = -24239.785362 eV Core-core repulsion = 20609.338952 eV Total energy + Delta-G solvation = -3630.446410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84825 -40.35974 -37.82337 -36.42354 -35.13706 -32.25013 -32.07417 -31.07960 -30.10518 -28.89701 -28.49116 -28.39959 -27.20432 -24.81000 -24.05197 -23.20132 -21.91573 -20.52778 -18.67797 -18.48467 -17.66451 -17.26611 -16.77588 -16.75683 -16.53203 -16.39639 -15.48811 -15.36964 -15.33040 -15.02979 -14.71991 -14.69994 -14.57452 -14.40515 -14.24964 -14.05633 -13.93427 -13.80679 -13.57004 -13.42387 -13.33866 -13.20421 -13.17736 -13.13527 -13.09331 -12.84643 -12.29247 -12.20580 -11.98736 -11.75554 -11.40682 -11.30337 -11.12729 -10.86521 -10.85581 -10.72614 -10.41736 -10.13626 -10.01260 -9.25405 -8.63038 -0.55010 0.35870 0.44449 0.90803 1.07274 1.33088 1.37659 1.44405 1.63204 1.79574 1.84329 1.91643 2.30377 2.33028 2.51217 2.76435 3.31878 3.53875 3.63213 3.67959 3.78491 3.79956 3.90101 4.08561 4.12752 4.16542 4.24161 4.28939 4.35451 4.46479 4.60494 4.62434 4.65218 4.69153 4.76713 4.77414 4.80881 4.81946 4.83866 4.84680 4.89864 5.05790 5.11247 5.31652 5.38108 5.38216 5.44197 5.55252 5.58714 5.59001 5.84922 6.46239 6.48729 7.23834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.218 6.218 7 C -0.114 4.114 8 C 0.135 3.865 9 N -0.726 5.726 10 C 0.549 3.451 11 O -0.540 6.540 12 C -0.216 4.216 13 C -0.013 4.013 14 C -0.075 4.075 15 C -0.099 4.099 16 C -0.092 4.092 17 C -0.063 4.063 18 C -0.085 4.085 19 O -0.544 6.544 20 Si 0.945 3.055 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.256 1.256 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.402 0.598 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.381 0.619 48 H 0.125 0.875 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 2.742 2.999 5.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.215 2.785 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.008 5.992 7 C -0.263 4.263 8 C 0.011 3.989 9 N -0.379 5.379 10 C 0.338 3.662 11 O -0.419 6.419 12 C -0.236 4.236 13 C -0.032 4.032 14 C -0.075 4.075 15 C -0.117 4.117 16 C -0.110 4.110 17 C -0.063 4.063 18 C -0.195 4.195 19 O -0.350 6.350 20 Si 0.767 3.233 21 H -0.170 1.170 22 H -0.172 1.172 23 H -0.180 1.180 24 C -0.143 4.143 25 C -0.104 4.104 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.236 0.764 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.096 0.904 47 H 0.229 0.771 48 H 0.142 0.858 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.493 1.162 1.343 3.061 hybrid contribution 1.587 1.153 1.864 2.706 sum 4.080 2.316 3.207 5.683 Atomic orbital electron populations 1.26081 1.19894 1.05084 1.04358 0.78810 0.67787 0.67163 0.64702 1.26038 1.06295 1.17894 1.04867 1.26085 1.06168 1.08588 1.14655 1.28098 1.09072 1.00038 1.20434 1.86913 1.73898 1.13384 1.25019 1.23645 1.04019 0.99337 0.99249 1.20986 1.00151 0.91958 0.85798 1.45854 1.53349 1.17032 1.21681 1.18329 0.80294 0.81062 0.86512 1.90852 1.37184 1.57542 1.56293 1.22850 1.05555 0.98239 0.96987 1.22412 0.93558 0.94601 0.92651 1.19052 0.99161 0.94775 0.94491 1.21450 0.96640 0.99601 0.94014 1.20938 0.99548 0.94757 0.95721 1.19439 0.97490 0.95164 0.94176 1.24775 1.00607 1.06826 0.87297 1.86510 1.73645 1.58150 1.16687 0.85753 0.81742 0.74450 0.81324 1.17025 1.17207 1.17992 1.20967 0.97997 0.99997 0.95345 1.21308 0.98573 0.94729 0.95779 0.91257 0.91132 0.90487 0.91101 0.90605 0.91099 0.90559 0.91074 0.91251 0.88553 0.88615 0.89455 0.89463 0.90314 0.90241 0.76380 0.85170 0.84379 0.85178 0.85181 0.90389 0.77122 0.85778 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.47 8.65 101.05 0.87 1.34 16 2 Si 1.02 -2.64 12.30 -169.99 -2.09 -4.73 16 3 C -0.44 0.99 8.65 101.05 0.87 1.86 16 4 C -0.45 0.47 8.65 101.05 0.87 1.35 16 5 C -0.38 0.71 5.14 101.05 0.52 1.23 16 6 S -0.22 -0.07 20.84 -107.50 -2.24 -2.31 16 7 C -0.11 0.13 6.05 37.16 0.23 0.36 16 8 C 0.14 0.08 5.68 -4.03 -0.02 0.06 16 9 N -0.73 0.10 5.55 -61.69 -0.34 -0.24 16 10 C 0.55 1.42 7.74 -12.97 -0.10 1.32 16 11 O -0.54 -3.66 16.23 5.19 0.08 -3.58 16 12 C -0.22 -0.06 9.41 -37.50 -0.35 -0.41 16 13 C -0.01 -0.01 9.46 -37.16 -0.35 -0.36 16 14 C -0.07 -0.06 5.87 -105.06 -0.62 -0.68 16 15 C -0.10 0.00 9.41 -39.11 -0.37 -0.37 16 16 C -0.09 -0.04 9.66 -39.65 -0.38 -0.43 16 17 C -0.06 -0.06 5.39 -104.50 -0.56 -0.62 16 18 C -0.08 0.07 2.79 36.01 0.10 0.17 16 19 O -0.54 0.14 12.81 -35.23 -0.45 -0.31 16 20 Si 0.94 -0.87 25.12 -169.99 -4.27 -5.14 16 21 H -0.25 -0.13 7.04 56.52 0.40 0.27 16 22 H -0.25 0.07 7.11 56.52 0.40 0.48 16 23 H -0.26 0.20 7.11 56.52 0.40 0.60 16 24 C -0.13 -0.11 8.65 -39.65 -0.34 -0.45 16 25 C -0.09 -0.06 9.80 -39.11 -0.38 -0.44 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 32 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 35 H 0.10 -0.24 7.96 -51.93 -0.41 -0.66 16 36 H 0.10 -0.23 7.96 -51.92 -0.41 -0.65 16 37 H 0.09 -0.18 8.14 -51.92 -0.42 -0.60 16 38 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.40 -1.29 8.45 -40.82 -0.35 -1.64 16 42 H 0.13 -0.33 6.07 -52.49 -0.32 -0.65 16 43 H 0.14 0.20 7.52 -52.49 -0.39 -0.20 16 44 H 0.13 -0.29 6.17 -52.49 -0.32 -0.61 16 45 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 46 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 47 H 0.38 -1.76 8.74 45.56 0.40 -1.37 16 48 H 0.12 -0.04 4.84 -52.49 -0.25 -0.30 16 49 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 LS Contribution 421.15 15.07 6.35 6.35 Total: 0.00 -8.27 421.15 -10.52 -18.79 By element: Atomic # 1 Polarization: -5.21 SS G_CDS: -7.54 Total: -12.75 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.02 Total: 3.93 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -0.34 Total: -0.24 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.37 Total: -3.89 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: -6.36 Total: -9.87 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.24 Total: -2.31 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -8.27 -10.52 -18.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.444 kcal (2) G-P(sol) polarization free energy of solvation -8.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds