Wall clock time and date at job start Tue Mar 9 2021 14:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86300 * 109.46808 * 2 1 4 4 C 1.86301 * 109.46972 * 239.99870 * 2 1 3 5 5 C 1.86300 * 109.47045 * 119.99900 * 2 1 3 6 6 S 1.81401 * 109.46984 * 59.05017 * 5 2 1 7 7 C 1.81399 * 102.99557 * 184.42104 * 6 5 2 8 8 C 1.53008 * 109.46764 * 175.57657 * 7 6 5 9 9 N 1.46505 * 109.47029 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00102 * 180.02562 * 9 8 7 11 11 O 1.21700 * 119.99924 * 359.97438 * 10 9 8 12 12 C 1.46433 * 120.00209 * 180.02562 * 10 9 8 13 13 C 1.34804 * 120.00059 * 180.02562 * 12 10 9 14 14 C 1.47210 * 120.00110 * 179.97438 * 13 12 10 15 15 C 1.39844 * 120.16482 * 0.31002 * 14 13 12 16 16 C 1.37891 * 119.82110 * 180.23153 * 15 14 13 17 17 C 1.38402 * 120.17022 * 359.47432 * 16 15 14 18 18 C 1.50705 * 119.82689 * 180.27693 * 17 16 15 19 19 O 1.42904 * 109.46933 * 64.99929 * 18 17 16 20 20 Si 1.86301 * 109.46996 * 185.00101 * 18 17 16 21 21 H 1.48497 * 109.47227 * 299.99446 * 20 18 17 22 22 H 1.48492 * 109.47028 * 60.00084 * 20 18 17 23 23 H 1.48503 * 109.46744 * 179.97438 * 20 18 17 24 24 C 1.38403 * 120.34846 * 0.25343 * 17 16 15 25 25 C 1.37894 * 120.16756 * 0.02562 * 24 17 16 26 26 H 1.08993 * 109.47018 * 299.99894 * 1 2 3 27 27 H 1.09002 * 109.47221 * 60.00377 * 1 2 3 28 28 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46786 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46921 * 299.99807 * 3 2 1 31 31 H 1.08993 * 109.47244 * 60.00245 * 3 2 1 32 32 H 1.08992 * 109.47700 * 297.55612 * 4 2 1 33 33 H 1.09001 * 109.47435 * 57.55774 * 4 2 1 34 34 H 1.09003 * 109.46841 * 177.55498 * 4 2 1 35 35 H 1.08996 * 109.46767 * 299.04812 * 5 2 1 36 36 H 1.09000 * 109.46675 * 179.05064 * 5 2 1 37 37 H 1.09001 * 109.47377 * 55.58020 * 7 6 5 38 38 H 1.08998 * 109.47343 * 295.57390 * 7 6 5 39 39 H 1.09000 * 109.47317 * 60.00361 * 8 7 6 40 40 H 1.08998 * 109.46973 * 299.99960 * 8 7 6 41 41 H 0.97005 * 119.99474 * 0.02562 * 9 8 7 42 42 H 1.07997 * 119.99764 * 359.97438 * 12 10 9 43 43 H 1.07997 * 120.00177 * 359.97438 * 13 12 10 44 44 H 1.07997 * 120.08873 * 0.02562 * 15 14 13 45 45 H 1.07991 * 119.91514 * 179.75400 * 16 15 14 46 46 H 1.09001 * 109.46734 * 304.99833 * 18 17 16 47 47 H 0.96701 * 113.99338 * 180.02562 * 19 18 17 48 48 H 1.08001 * 119.91730 * 180.02562 * 24 17 16 49 49 H 1.07996 * 120.08616 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 16 1.8563 -2.5801 1.5354 7 6 2.4436 -3.2182 3.1286 8 6 1.8966 -4.6307 3.3451 9 7 2.3704 -5.1458 4.6322 10 6 2.0128 -6.3807 5.0366 11 8 1.2959 -7.0676 4.3329 12 6 2.4859 -6.8954 6.3233 13 6 2.1286 -8.1308 6.7275 14 6 2.6046 -8.6485 8.0208 15 6 3.4224 -7.8592 8.8356 16 6 3.8681 -8.3530 10.0434 17 6 3.4994 -9.6220 10.4548 18 6 3.9860 -10.1516 11.7792 19 8 3.4329 -9.3672 12.8380 20 14 3.4489 -11.9248 11.9740 21 1 1.9668 -12.0014 11.9248 22 1 4.0236 -12.7397 10.8737 23 1 3.9290 -12.4468 13.2788 24 6 2.6857 -10.4070 9.6565 25 6 2.2365 -9.9295 8.4434 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 2.1570 -1.9177 -1.4996 33 1 2.0854 -0.3904 -2.4106 34 1 3.5732 -0.8405 -1.5433 35 1 2.1347 -0.3546 2.4110 36 1 3.5739 -0.8929 1.5126 37 1 2.0964 -2.5672 3.9310 38 1 3.5332 -3.2465 3.1294 39 1 2.2438 -5.2817 2.5428 40 1 0.8070 -4.6024 3.3444 41 1 2.9415 -4.5981 5.1932 42 1 3.1217 -6.2856 6.9479 43 1 1.4931 -8.7407 6.1027 44 1 3.7067 -6.8668 8.5182 45 1 4.5029 -7.7463 10.6720 46 1 5.0739 -10.0953 11.8153 47 1 3.7045 -9.6518 13.7214 48 1 2.4019 -11.3961 9.9846 49 1 1.6013 -10.5430 7.8218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:48:19 Heat of formation + Delta-G solvation = -73.958652 kcal Electronic energy + Delta-G solvation = -24239.556705 eV Core-core repulsion = 20609.338952 eV Total energy + Delta-G solvation = -3630.217753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95708 -40.41536 -37.74461 -36.55123 -35.18889 -32.28440 -32.06650 -31.06224 -29.96551 -28.75183 -28.32394 -28.30511 -27.18234 -24.81655 -24.02508 -23.23586 -21.97410 -20.58497 -18.70189 -18.42711 -17.66635 -17.31449 -16.83942 -16.77850 -16.49914 -16.39818 -15.46577 -15.44053 -15.36318 -14.95758 -14.70596 -14.60093 -14.51085 -14.36113 -14.10465 -13.96940 -13.91961 -13.65544 -13.50734 -13.39361 -13.24489 -13.20573 -13.12531 -13.06995 -12.98554 -12.85809 -12.30234 -12.16347 -11.92694 -11.73019 -11.34258 -11.32051 -11.25599 -10.79848 -10.74339 -10.63657 -10.33132 -10.26692 -9.99777 -9.25771 -8.63273 -0.57844 0.36995 0.51474 0.85339 1.15611 1.44138 1.47601 1.49260 1.77124 1.89654 1.94211 2.09576 2.18207 2.29729 2.65226 2.77155 3.43230 3.56331 3.63963 3.71594 3.84197 3.87516 3.95539 4.12470 4.17592 4.30897 4.33473 4.34413 4.42980 4.53531 4.64163 4.77052 4.78515 4.81773 4.82585 4.86460 4.86501 4.86620 4.87528 4.92480 4.95177 5.07248 5.12320 5.25636 5.36790 5.46382 5.57019 5.57542 5.65951 5.66749 5.88334 6.44655 6.80418 7.13005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.082 2.918 3 C -0.447 4.447 4 C -0.464 4.464 5 C -0.380 4.380 6 S -0.271 6.271 7 C -0.098 4.098 8 C 0.138 3.862 9 N -0.709 5.709 10 C 0.542 3.458 11 O -0.592 6.592 12 C -0.208 4.208 13 C -0.018 4.018 14 C -0.084 4.084 15 C -0.099 4.099 16 C -0.100 4.100 17 C -0.077 4.077 18 C -0.081 4.081 19 O -0.561 6.561 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.255 1.255 24 C -0.141 4.141 25 C -0.098 4.098 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.420 0.580 42 H 0.165 0.835 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.100 0.900 47 H 0.399 0.601 48 H 0.128 0.872 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 4.493 4.387 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.273 2.727 3 C -0.557 4.557 4 C -0.571 4.571 5 C -0.572 4.572 6 S -0.046 6.046 7 C -0.246 4.246 8 C 0.013 3.987 9 N -0.362 5.362 10 C 0.332 3.668 11 O -0.474 6.474 12 C -0.229 4.229 13 C -0.038 4.038 14 C -0.084 4.084 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.192 4.192 19 O -0.371 6.371 20 Si 0.797 3.203 21 H -0.198 1.198 22 H -0.184 1.184 23 H -0.179 1.179 24 C -0.159 4.159 25 C -0.116 4.116 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.258 0.742 42 H 0.182 0.818 43 H 0.142 0.858 44 H 0.173 0.827 45 H 0.162 0.838 46 H 0.118 0.882 47 H 0.249 0.751 48 H 0.146 0.854 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.246 2.931 2.753 5.848 hybrid contribution 1.013 0.595 1.414 1.838 sum 5.259 3.526 4.167 7.580 Atomic orbital electron populations 1.26316 1.22066 1.04196 1.04421 0.77860 0.65489 0.66314 0.63036 1.26088 1.06684 1.17785 1.05106 1.26320 1.06474 1.08142 1.16143 1.28234 1.09793 0.97818 1.21360 1.87186 1.74764 1.15973 1.26689 1.23555 1.04645 0.97934 0.98480 1.20868 0.99229 0.92965 0.85601 1.45721 1.52667 1.16386 1.21459 1.18781 0.79661 0.81360 0.86950 1.90829 1.39664 1.59036 1.57921 1.22954 1.05605 0.98247 0.96072 1.22371 0.93671 0.94940 0.92780 1.19110 0.99771 0.95017 0.94531 1.21735 0.95804 1.00455 0.93614 1.21177 0.99790 0.94759 0.96095 1.19757 0.97409 0.95591 0.94957 1.24740 1.01767 1.06065 0.86584 1.86460 1.74153 1.58526 1.17922 0.85368 0.79643 0.74534 0.80709 1.19823 1.18416 1.17870 1.21131 0.98573 1.00481 0.95694 1.21522 0.98826 0.95172 0.96035 0.91067 0.91211 0.91832 0.90606 0.90678 0.90605 0.91889 0.91176 0.91023 0.87311 0.87467 0.87902 0.87989 0.92049 0.91959 0.74215 0.81800 0.85797 0.82738 0.83765 0.88192 0.75065 0.85447 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.71 8.65 113.37 0.98 1.69 16 2 Si 1.08 -6.00 12.30 68.60 0.84 -5.15 16 3 C -0.45 2.55 8.65 113.37 0.98 3.53 16 4 C -0.46 0.73 8.65 113.37 0.98 1.71 16 5 C -0.38 1.83 5.14 113.37 0.58 2.42 16 6 S -0.27 -0.26 20.84 -56.49 -1.18 -1.44 16 7 C -0.10 0.30 6.05 71.98 0.44 0.74 16 8 C 0.14 0.26 5.68 86.38 0.49 0.75 16 9 N -0.71 0.44 5.55 -467.32 -2.59 -2.15 16 10 C 0.54 3.10 7.74 86.38 0.67 3.77 16 11 O -0.59 -9.28 16.23 -4.35 -0.07 -9.35 16 12 C -0.21 -0.01 9.41 23.62 0.22 0.21 16 13 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 14 C -0.08 -0.14 5.87 -20.15 -0.12 -0.26 16 15 C -0.10 0.10 9.41 22.58 0.21 0.32 16 16 C -0.10 0.01 9.66 22.23 0.21 0.22 16 17 C -0.08 -0.12 5.39 -19.78 -0.11 -0.23 16 18 C -0.08 0.19 2.79 71.24 0.20 0.38 16 19 O -0.56 0.76 12.81 -148.98 -1.91 -1.14 16 20 Si 0.97 -1.52 25.12 68.60 1.72 0.20 16 21 H -0.27 -0.68 7.04 99.48 0.70 0.02 16 22 H -0.26 -0.01 7.11 99.48 0.71 0.70 16 23 H -0.25 0.51 7.11 99.48 0.71 1.21 16 24 C -0.14 -0.35 8.65 22.23 0.19 -0.16 16 25 C -0.10 -0.22 9.80 22.57 0.22 0.00 16 26 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 27 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H 0.06 0.08 7.96 -2.38 -0.02 0.06 16 29 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 33 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 34 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.11 -0.76 7.96 -2.39 -0.02 -0.78 16 36 H 0.11 -0.72 7.96 -2.39 -0.02 -0.74 16 37 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 40 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.42 -3.45 8.45 -92.70 -0.78 -4.23 16 42 H 0.16 -1.24 6.07 -2.91 -0.02 -1.26 16 43 H 0.12 0.62 7.52 -2.91 -0.02 0.60 16 44 H 0.16 -1.08 6.17 -2.91 -0.02 -1.10 16 45 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 46 H 0.10 -0.68 7.96 -2.39 -0.02 -0.70 16 47 H 0.40 -4.10 8.74 -74.06 -0.65 -4.74 16 48 H 0.13 0.09 4.84 -2.91 -0.01 0.07 16 49 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -21.29 421.15 3.46 -17.83 By element: Atomic # 1 Polarization: -14.32 SS G_CDS: 0.26 Total: -14.06 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.38 Total: 15.27 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.59 Total: -2.15 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.98 Total: -10.50 kcal Atomic # 14 Polarization: -7.52 SS G_CDS: 2.57 Total: -4.95 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -1.18 Total: -1.44 kcal Total: -21.29 3.46 -17.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.130 kcal (2) G-P(sol) polarization free energy of solvation -21.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds