Wall clock time and date at job start Tue Mar 9 2021 14:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.47143 * 2 1 4 4 C 1.86302 * 109.47154 * 240.00090 * 2 1 3 5 5 C 1.86303 * 109.47288 * 120.00222 * 2 1 3 6 6 S 1.81399 * 109.46973 * 67.30012 * 5 2 1 7 7 C 1.81400 * 103.00131 * 78.44801 * 6 5 2 8 8 C 1.52996 * 109.47182 * 174.34652 * 7 6 5 9 9 N 1.46506 * 109.47085 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99938 * 179.97438 * 9 8 7 11 11 O 1.21572 * 119.99936 * 0.02562 * 10 9 8 12 12 C 1.47693 * 120.00028 * 180.02562 * 10 9 8 13 13 C 1.39616 * 120.15517 * 359.97438 * 12 10 9 14 14 C 1.38110 * 119.84976 * 180.02562 * 13 12 10 15 15 F 1.35102 * 119.91235 * 180.02562 * 14 13 12 16 16 C 1.38609 * 120.16983 * 0.02562 * 14 13 12 17 17 C 1.50701 * 119.84268 * 179.97438 * 16 14 13 18 18 O 1.42902 * 109.47393 * 285.00141 * 17 16 14 19 19 Si 1.86300 * 109.46952 * 164.99837 * 17 16 14 20 20 H 1.48508 * 109.46961 * 60.00198 * 19 17 16 21 21 H 1.48496 * 109.47071 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47356 * 300.00142 * 19 17 16 23 23 C 1.38232 * 120.31278 * 0.02562 * 16 14 13 24 24 C 1.38269 * 120.14476 * 359.97438 * 23 16 14 25 25 F 1.35102 * 120.08070 * 179.97438 * 24 23 16 26 26 H 1.08993 * 109.46875 * 299.99619 * 1 2 3 27 27 H 1.08996 * 109.46886 * 59.99754 * 1 2 3 28 28 H 1.08999 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46835 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46935 * 300.00037 * 3 2 1 31 31 H 1.08993 * 109.46924 * 60.00410 * 3 2 1 32 32 H 1.09006 * 109.47118 * 307.36443 * 4 2 1 33 33 H 1.08998 * 109.47236 * 67.35945 * 4 2 1 34 34 H 1.08998 * 109.47323 * 187.36522 * 4 2 1 35 35 H 1.08997 * 109.46822 * 307.30255 * 5 2 1 36 36 H 1.08996 * 109.47184 * 187.29944 * 5 2 1 37 37 H 1.08993 * 109.47266 * 54.34352 * 7 6 5 38 38 H 1.09001 * 109.46999 * 294.34455 * 7 6 5 39 39 H 1.09000 * 109.47033 * 60.00032 * 8 7 6 40 40 H 1.09001 * 109.46993 * 299.99807 * 8 7 6 41 41 H 0.96996 * 119.99895 * 0.02562 * 9 8 7 42 42 H 1.07998 * 120.07161 * 0.30300 * 13 12 10 43 43 H 1.09002 * 109.47175 * 45.00041 * 17 16 14 44 44 H 0.96700 * 113.99343 * 299.99787 * 18 17 16 45 45 H 1.08001 * 119.92608 * 179.97438 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 16 2.0634 -2.6397 1.4163 7 6 3.3207 -3.2929 0.2837 8 6 3.1883 -4.8147 0.1974 9 7 4.2034 -5.3422 -0.7178 10 6 4.2775 -6.6676 -0.9504 11 8 3.5017 -7.4255 -0.4010 12 6 5.3012 -7.1995 -1.8726 13 6 6.1934 -6.3320 -2.5057 14 6 7.1478 -6.8361 -3.3673 15 9 8.0122 -5.9979 -3.9801 16 6 7.2212 -8.1997 -3.6048 17 6 8.2652 -8.7418 -4.5468 18 8 7.8824 -8.4610 -5.8947 19 14 8.4146 -10.5842 -4.3145 20 1 7.1070 -11.2270 -4.6019 21 1 9.4429 -11.1184 -5.2432 22 1 8.8124 -10.8759 -2.9139 23 6 6.3406 -9.0647 -2.9826 24 6 5.3799 -8.5741 -2.1175 25 9 4.5196 -9.4205 -1.5105 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2702 -0.8899 31 1 2.1208 2.2702 0.8900 32 1 2.0171 -1.8608 -1.5895 33 1 2.2322 -0.2940 -2.4062 34 1 3.5660 -0.9937 -1.4578 35 1 2.0180 -0.4455 2.4062 36 1 3.5662 -0.7666 1.5888 37 1 4.3128 -3.0350 0.6543 38 1 3.1786 -2.8592 -0.7062 39 1 2.1962 -5.0726 -0.1732 40 1 3.3304 -5.2485 1.1873 41 1 4.8226 -4.7376 -1.1558 42 1 6.1402 -5.2697 -2.3185 43 1 9.2249 -8.2700 -4.3360 44 1 7.0357 -8.8508 -6.1523 45 1 6.4031 -10.1260 -3.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:48:28 Heat of formation + Delta-G solvation = -166.941070 kcal Electronic energy + Delta-G solvation = -27576.687727 eV Core-core repulsion = 23287.293761 eV Total energy + Delta-G solvation = -4289.393965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.15213 -50.08373 -41.39702 -39.96047 -37.65842 -36.66075 -33.73039 -31.71501 -31.40216 -29.98051 -28.70459 -28.44249 -28.30048 -27.74702 -24.70956 -24.42350 -23.30202 -21.98920 -19.84320 -18.86831 -18.68501 -17.99543 -17.45648 -17.32224 -16.93638 -16.76423 -16.73656 -16.52330 -16.39752 -15.90119 -15.63650 -15.54559 -15.26783 -14.85345 -14.80846 -14.61289 -14.45648 -14.13189 -13.97158 -13.84229 -13.71518 -13.56715 -13.29910 -13.19200 -13.14037 -13.03088 -13.00163 -12.88874 -12.51091 -12.35351 -12.20806 -11.85890 -11.66750 -11.33997 -10.93890 -10.74062 -10.65571 -10.58139 -10.57056 -10.33437 -9.84702 -8.47942 -0.84445 -0.34030 0.49901 1.04150 1.33477 1.41451 1.51089 1.53946 1.67281 1.88900 1.94973 1.97777 2.14826 2.20079 2.67842 2.76259 2.83286 3.09096 3.26695 3.48269 3.54078 3.61957 3.77655 3.86344 4.14401 4.28924 4.33578 4.36421 4.39273 4.52090 4.64137 4.66089 4.70795 4.76826 4.80535 4.81666 4.82710 4.85940 4.87628 4.88503 4.97510 5.09267 5.35878 5.57619 5.65672 5.67010 6.21805 6.61036 6.91051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.071 2.929 3 C -0.458 4.458 4 C -0.464 4.464 5 C -0.383 4.383 6 S -0.273 6.273 7 C -0.113 4.113 8 C 0.137 3.863 9 N -0.703 5.703 10 C 0.558 3.442 11 O -0.561 6.561 12 C -0.147 4.147 13 C -0.075 4.075 14 C 0.109 3.891 15 F -0.124 7.124 16 C -0.094 4.094 17 C -0.083 4.083 18 O -0.543 6.543 19 Si 0.976 3.024 20 H -0.242 1.242 21 H -0.265 1.265 22 H -0.252 1.252 23 C -0.139 4.139 24 C 0.139 3.861 25 F -0.126 7.126 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.419 0.581 42 H 0.184 0.816 43 H 0.133 0.867 44 H 0.393 0.607 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 4.856 -2.717 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.263 2.737 3 C -0.566 4.566 4 C -0.571 4.571 5 C -0.576 4.576 6 S -0.048 6.048 7 C -0.261 4.261 8 C 0.013 3.987 9 N -0.357 5.357 10 C 0.345 3.655 11 O -0.440 6.440 12 C -0.152 4.152 13 C -0.094 4.094 14 C 0.089 3.911 15 F -0.102 7.102 16 C -0.096 4.096 17 C -0.193 4.193 18 O -0.350 6.350 19 Si 0.798 3.202 20 H -0.165 1.165 21 H -0.190 1.190 22 H -0.176 1.176 23 C -0.157 4.157 24 C 0.118 3.882 25 F -0.104 7.104 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.258 0.742 42 H 0.202 0.798 43 H 0.150 0.850 44 H 0.243 0.757 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.200 3.221 -1.630 4.825 hybrid contribution 0.379 0.965 -0.383 1.105 sum 3.580 4.186 -2.014 5.864 Atomic orbital electron populations 1.26387 1.22750 1.04241 1.04014 0.78160 0.65503 0.65704 0.64301 1.26229 1.06619 1.19202 1.04589 1.26430 1.06770 1.08315 1.15632 1.28305 1.10603 0.96910 1.21786 1.87157 1.43260 1.11158 1.63194 1.23904 1.01688 0.96611 1.03885 1.20946 0.91934 0.91922 0.93904 1.45656 1.36338 1.06510 1.47214 1.18069 0.83366 0.82877 0.81185 1.90889 1.43327 1.58424 1.51379 1.19760 1.00187 0.92503 1.02713 1.21380 0.91992 1.02010 0.94047 1.17280 0.91026 0.87177 0.95628 1.91584 1.67384 1.70260 1.80963 1.20568 0.98053 0.92282 0.98679 1.25115 0.98365 1.13441 0.82410 1.86573 1.44433 1.78901 1.25124 0.85285 0.81366 0.72644 0.80875 1.16512 1.18963 1.17603 1.21102 0.94815 1.02276 0.97551 1.17818 0.89709 0.86719 0.93967 1.91602 1.67879 1.69888 1.81031 0.91830 0.91371 0.91504 0.90685 0.91087 0.91323 0.90745 0.90623 0.89991 0.86415 0.87139 0.87318 0.86004 0.91317 0.91496 0.74234 0.79837 0.84965 0.75745 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.27 8.65 113.37 0.98 2.25 16 2 Si 1.07 -8.61 12.15 68.60 0.83 -7.78 16 3 C -0.46 2.94 8.65 113.37 0.98 3.92 16 4 C -0.46 3.73 7.09 113.37 0.80 4.53 16 5 C -0.38 2.25 5.18 113.37 0.59 2.84 16 6 S -0.27 0.16 20.94 -56.49 -1.18 -1.02 16 7 C -0.11 0.67 5.73 71.98 0.41 1.08 16 8 C 0.14 -0.13 5.68 86.38 0.49 0.36 16 9 N -0.70 2.16 5.51 -466.11 -2.57 -0.41 16 10 C 0.56 2.51 7.77 86.74 0.67 3.18 16 11 O -0.56 -8.10 15.34 -3.94 -0.06 -8.16 16 12 C -0.15 -0.10 5.88 -20.06 -0.12 -0.22 16 13 C -0.08 0.40 9.52 22.57 0.21 0.62 16 14 C 0.11 -0.33 7.23 22.33 0.16 -0.17 16 15 F -0.12 0.12 16.73 44.97 0.75 0.87 16 16 C -0.09 0.30 5.27 -19.78 -0.10 0.19 16 17 C -0.08 0.37 2.44 71.24 0.17 0.55 16 18 O -0.54 1.62 12.88 -148.98 -1.92 -0.30 16 19 Si 0.98 -4.50 25.48 68.60 1.75 -2.75 16 20 H -0.24 1.31 6.72 99.48 0.67 1.97 16 21 H -0.27 0.28 7.11 99.48 0.71 0.98 16 22 H -0.25 0.77 7.11 99.48 0.71 1.47 16 23 C -0.14 0.25 8.62 22.28 0.19 0.44 16 24 C 0.14 0.45 7.28 22.67 0.17 0.61 16 25 F -0.13 -1.20 15.55 44.97 0.70 -0.51 16 26 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 28 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 29 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.51 6.60 -2.38 -0.02 -0.53 16 33 H 0.07 -0.56 7.96 -2.39 -0.02 -0.58 16 34 H 0.08 -0.87 7.56 -2.39 -0.02 -0.89 16 35 H 0.12 -0.66 7.96 -2.39 -0.02 -0.68 16 36 H 0.11 -0.96 7.96 -2.39 -0.02 -0.98 16 37 H 0.11 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.12 -1.12 4.33 -2.39 -0.01 -1.13 16 39 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.42 -4.55 6.50 -92.71 -0.60 -5.16 16 42 H 0.18 -2.35 6.40 -2.91 -0.02 -2.37 16 43 H 0.13 -0.75 7.89 -2.39 -0.02 -0.77 16 44 H 0.39 -3.93 8.70 -74.06 -0.64 -4.57 16 45 H 0.17 -0.77 4.86 -2.91 -0.01 -0.79 16 Total: 0.00 -20.83 389.45 4.43 -16.40 By element: Atomic # 1 Polarization: -17.05 SS G_CDS: 0.51 Total: -16.54 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 5.62 Total: 20.19 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.57 Total: -0.41 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -1.98 Total: -8.46 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 1.45 Total: 0.37 kcal Atomic # 14 Polarization: -13.11 SS G_CDS: 2.58 Total: -10.53 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.18 Total: -1.02 kcal Total: -20.83 4.43 -16.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.543 kcal (2) G-P(sol) polarization free energy of solvation -20.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds