Wall clock time and date at job start Tue Mar 9 2021 14:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86305 * 109.47080 * 2 1 4 4 C 1.86298 * 109.46879 * 240.00038 * 2 1 3 5 5 C 1.86300 * 109.47105 * 119.99864 * 2 1 3 6 6 S 1.81399 * 109.46884 * 62.74794 * 5 2 1 7 7 C 1.81399 * 102.99906 * 175.28887 * 6 5 2 8 8 C 1.53001 * 109.47339 * 184.71180 * 7 6 5 9 9 N 1.46492 * 109.47668 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00690 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99716 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00386 * 179.97438 * 10 9 8 13 13 N 1.46502 * 109.46914 * 179.97438 * 12 10 9 14 14 C 1.35038 * 125.92721 * 125.00401 * 13 12 10 15 15 C 1.35084 * 107.98021 * 180.02562 * 14 13 12 16 16 C 1.50697 * 126.07789 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47187 * 105.24492 * 16 15 14 18 18 Si 1.86299 * 109.46961 * 345.24358 * 16 15 14 19 19 H 1.48502 * 109.47461 * 299.99828 * 18 16 15 20 20 H 1.48500 * 109.47047 * 60.00022 * 18 16 15 21 21 H 1.48506 * 109.47153 * 180.02562 * 18 16 15 22 22 C 1.40854 * 107.84686 * 359.97438 * 15 14 13 23 23 C 1.48419 * 126.03617 * 179.97438 * 22 15 14 24 24 C 1.39320 * 120.11646 * 137.19420 * 23 22 15 25 25 C 1.38029 * 119.87640 * 179.97438 * 24 23 22 26 26 C 1.38318 * 120.11809 * 359.97240 * 25 24 23 27 27 C 1.38317 * 120.24691 * 0.02833 * 26 25 24 28 28 C 1.38024 * 120.11605 * 359.97438 * 27 26 25 29 29 N 1.31625 * 107.92213 * 0.22974 * 22 15 14 30 30 H 1.09001 * 109.46943 * 300.00716 * 1 2 3 31 31 H 1.09006 * 109.47148 * 59.99879 * 1 2 3 32 32 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47033 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47288 * 300.00008 * 3 2 1 35 35 H 1.09000 * 109.46959 * 60.00128 * 3 2 1 36 36 H 1.09000 * 109.47281 * 305.60768 * 4 2 1 37 37 H 1.09002 * 109.47443 * 65.61483 * 4 2 1 38 38 H 1.09005 * 109.47035 * 185.61292 * 4 2 1 39 39 H 1.08999 * 109.46923 * 302.75353 * 5 2 1 40 40 H 1.08990 * 109.47175 * 182.74898 * 5 2 1 41 41 H 1.08998 * 109.47147 * 64.71345 * 7 6 5 42 42 H 1.09001 * 109.47195 * 304.71161 * 7 6 5 43 43 H 1.09006 * 109.47155 * 59.99990 * 8 7 6 44 44 H 1.09001 * 109.47408 * 300.00417 * 8 7 6 45 45 H 0.97006 * 119.99818 * 0.02562 * 9 8 7 46 46 H 1.08998 * 109.46949 * 60.00246 * 12 10 9 47 47 H 1.08997 * 109.46877 * 300.00091 * 12 10 9 48 48 H 1.07998 * 126.01066 * 0.02562 * 14 13 12 49 49 H 1.09003 * 109.47511 * 225.24554 * 16 15 14 50 50 H 0.96704 * 113.99957 * 179.97438 * 17 16 15 51 51 H 1.07994 * 120.06635 * 359.95457 * 24 23 22 52 52 H 1.08001 * 119.93785 * 180.02562 * 25 24 23 53 53 H 1.08004 * 119.87643 * 179.74337 * 26 25 24 54 54 H 1.07995 * 119.94229 * 179.97438 * 27 26 25 55 55 H 1.07998 * 120.05981 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4841 -0.8782 1.5212 6 16 1.9472 -2.6105 1.4807 7 6 2.7552 -3.3222 2.9405 8 6 2.4925 -4.8288 2.9852 9 7 3.1455 -5.4038 4.1637 10 6 3.0498 -6.7254 4.4098 11 8 2.4226 -7.4387 3.6556 12 6 3.7220 -7.3169 5.6219 13 7 3.4703 -8.7595 5.6646 14 6 4.4106 -9.7262 5.7350 15 6 3.7800 -10.9207 5.7539 16 6 4.4419 -12.2725 5.8281 17 8 4.2833 -12.8090 7.1430 18 14 6.2563 -12.0975 5.4434 19 1 6.4211 -11.5400 4.0769 20 1 6.8856 -11.1834 6.4301 21 1 6.9085 -13.4297 5.5158 22 6 2.3939 -10.6781 5.6932 23 6 1.3263 -11.7092 5.6893 24 6 0.1794 -11.5309 6.4598 25 6 -0.8105 -12.4927 6.4521 26 6 -0.6656 -13.6317 5.6808 27 6 0.4710 -13.8139 4.9139 28 6 1.4672 -12.8585 4.9143 29 7 2.2128 -9.3757 5.6349 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.5741 1.7565 0.0005 34 1 2.1208 2.2703 -0.8899 35 1 2.1207 2.2703 0.8900 36 1 2.0410 -1.8728 -1.5728 37 1 2.2051 -0.3096 -2.4083 38 1 3.5694 -0.9661 -1.4723 39 1 2.0810 -0.3936 2.4104 40 1 3.5728 -0.8357 1.5461 41 1 2.3543 -2.8567 3.8409 42 1 3.8288 -3.1421 2.8856 43 1 2.8934 -5.2944 2.0848 44 1 1.4189 -5.0090 3.0400 45 1 3.6468 -4.8333 4.7672 46 1 3.3216 -6.8518 6.5227 47 1 4.7955 -7.1365 5.5662 48 1 5.4789 -9.5715 5.7700 49 1 3.9800 -12.9435 5.1038 50 1 4.6856 -13.6801 7.2635 51 1 0.0651 -10.6419 7.0623 52 1 -1.7003 -12.3553 7.0487 53 1 -1.4408 -14.3838 5.6809 54 1 0.5793 -14.7052 4.3139 55 1 2.3541 -13.0014 4.3149 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:51:09 Heat of formation + Delta-G solvation = -2.578151 kcal Electronic energy + Delta-G solvation = -32305.741688 eV Core-core repulsion = 27980.239885 eV Total energy + Delta-G solvation = -4325.501803 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 407.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52056 -40.79009 -39.76510 -37.63449 -36.57887 -34.87404 -32.59570 -32.23068 -31.69732 -31.29789 -29.99145 -28.88587 -28.53460 -28.33728 -28.32565 -26.01669 -24.66432 -23.67480 -23.39750 -22.01000 -21.59883 -20.88292 -18.60174 -18.49733 -18.30862 -17.69277 -17.18429 -17.03880 -16.72085 -16.39791 -16.08865 -15.94216 -15.71775 -15.49609 -15.18083 -15.05447 -14.87700 -14.67367 -14.55379 -14.34964 -14.26090 -14.12190 -14.01585 -13.98686 -13.68900 -13.61635 -13.53783 -13.42317 -13.30901 -13.15399 -13.10100 -13.00436 -12.86464 -12.65508 -12.30600 -12.22619 -12.08402 -11.86449 -11.55517 -11.40733 -11.34052 -10.86634 -10.76452 -10.68464 -10.61334 -10.33761 -10.12491 -9.86152 -9.80238 -9.31652 -8.66024 0.11447 0.45678 0.47591 0.78006 1.18781 1.28375 1.38861 1.46089 1.50595 1.53954 1.69500 1.75382 1.91972 1.94462 2.05303 2.19712 2.63382 2.89489 3.28723 3.53106 3.59900 3.61765 3.79490 3.84436 3.86733 3.96496 4.06845 4.07262 4.15035 4.26885 4.30499 4.32024 4.35567 4.52852 4.57149 4.60370 4.73342 4.75330 4.76693 4.79653 4.80671 4.84127 4.84736 4.85737 4.87496 4.92864 4.98411 5.12229 5.15941 5.28174 5.55193 5.57002 5.58374 5.60893 5.63666 5.64959 5.83810 6.04808 6.34321 6.54491 6.93366 7.05392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.083 2.917 3 C -0.447 4.447 4 C -0.463 4.463 5 C -0.378 4.378 6 S -0.276 6.276 7 C -0.096 4.096 8 C 0.142 3.858 9 N -0.708 5.708 10 C 0.496 3.504 11 O -0.564 6.564 12 C 0.112 3.888 13 N -0.362 5.362 14 C 0.063 3.937 15 C -0.228 4.228 16 C -0.051 4.051 17 O -0.563 6.563 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.248 1.248 21 H -0.251 1.251 22 C 0.110 3.890 23 C -0.026 4.026 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.106 4.106 29 N -0.293 5.293 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.423 0.577 46 H 0.145 0.855 47 H 0.179 0.821 48 H 0.211 0.789 49 H 0.076 0.924 50 H 0.392 0.608 51 H 0.112 0.888 52 H 0.141 0.859 53 H 0.148 0.852 54 H 0.151 0.849 55 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 4.480 2.291 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.274 2.726 3 C -0.556 4.556 4 C -0.570 4.570 5 C -0.570 4.570 6 S -0.051 6.051 7 C -0.244 4.244 8 C 0.017 3.983 9 N -0.364 5.364 10 C 0.281 3.719 11 O -0.441 6.441 12 C -0.012 4.012 13 N -0.144 5.144 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.161 4.161 17 O -0.371 6.371 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.172 1.172 21 H -0.174 1.174 22 C -0.055 4.055 23 C -0.028 4.028 24 C -0.133 4.133 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.125 4.125 29 N -0.114 5.114 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.262 0.738 46 H 0.162 0.838 47 H 0.196 0.804 48 H 0.227 0.773 49 H 0.094 0.906 50 H 0.242 0.758 51 H 0.130 0.870 52 H 0.159 0.841 53 H 0.166 0.834 54 H 0.169 0.831 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.753 5.241 0.898 7.834 hybrid contribution 0.948 -0.235 1.127 1.491 sum 6.700 5.006 2.025 8.606 Atomic orbital electron populations 1.26344 1.22337 1.04068 1.04467 0.77844 0.65285 0.66368 0.63110 1.26082 1.06722 1.17702 1.05110 1.26314 1.06466 1.08074 1.16104 1.28220 1.10182 0.97199 1.21437 1.87272 1.68764 1.11464 1.37596 1.23546 1.04691 0.96257 0.99944 1.20804 0.97591 0.91471 0.88428 1.45691 1.55043 1.07670 1.28040 1.21123 0.80892 0.82656 0.87252 1.90836 1.42402 1.61139 1.49754 1.21993 1.05753 0.75299 0.98149 1.48102 1.03464 1.06357 1.56436 1.22745 0.97168 0.87413 1.00846 1.19731 0.91931 0.95314 1.16943 1.24280 1.11589 0.92186 0.88059 1.86509 1.82005 1.39330 1.29258 0.85317 0.72872 0.81765 0.79797 1.18575 1.17157 1.17408 1.20914 0.93719 0.91056 0.99808 1.17969 0.92506 0.93130 0.99158 1.21253 0.93523 0.99451 0.99035 1.21352 0.99037 0.94135 0.99875 1.21585 0.98411 0.97747 0.95896 1.21411 0.93417 0.99535 0.99461 1.21328 1.00045 0.92837 0.98293 1.77691 1.02714 1.07123 1.23849 0.91058 0.91182 0.92028 0.90529 0.90698 0.90598 0.91992 0.91199 0.91027 0.87472 0.87129 0.87970 0.87484 0.92083 0.92730 0.73822 0.83762 0.80373 0.77269 0.90577 0.75804 0.86966 0.84127 0.83437 0.83119 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.68 8.65 113.37 0.98 1.66 16 2 Si 1.08 -6.27 12.30 68.60 0.84 -5.43 16 3 C -0.45 2.70 8.65 113.37 0.98 3.68 16 4 C -0.46 0.78 8.65 113.37 0.98 1.76 16 5 C -0.38 2.04 5.14 113.37 0.58 2.63 16 6 S -0.28 -0.16 20.84 -56.49 -1.18 -1.34 16 7 C -0.10 0.42 6.05 71.98 0.44 0.86 16 8 C 0.14 0.10 5.68 86.38 0.49 0.59 16 9 N -0.71 2.66 5.55 -463.07 -2.57 0.09 16 10 C 0.50 1.65 7.86 87.66 0.69 2.34 16 11 O -0.56 -9.29 15.69 -3.05 -0.05 -9.34 16 12 C 0.11 -0.44 6.99 85.63 0.60 0.16 16 13 N -0.36 -2.34 3.40 -351.91 -1.20 -3.54 16 14 C 0.06 0.25 9.96 83.47 0.83 1.08 16 15 C -0.23 -1.87 5.39 -19.95 -0.11 -1.98 16 16 C -0.05 -0.13 2.50 71.23 0.18 0.04 16 17 O -0.56 -1.99 12.86 -148.98 -1.92 -3.90 16 18 Si 0.98 -1.70 26.06 68.60 1.79 0.09 16 19 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 20 H -0.25 0.49 7.03 99.48 0.70 1.19 16 21 H -0.25 0.51 7.11 99.48 0.71 1.22 16 22 C 0.11 1.52 6.67 42.53 0.28 1.80 16 23 C -0.03 -0.32 5.74 -20.04 -0.12 -0.44 16 24 C -0.11 -1.31 9.78 22.48 0.22 -1.09 16 25 C -0.13 -0.86 10.03 22.24 0.22 -0.64 16 26 C -0.12 -0.49 10.04 22.31 0.22 -0.27 16 27 C -0.12 -0.51 10.03 22.24 0.22 -0.29 16 28 C -0.11 -0.84 8.89 22.48 0.20 -0.64 16 29 N -0.29 -4.44 11.66 -48.15 -0.56 -5.00 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 32 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 33 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 36 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 37 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 38 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 39 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 40 H 0.11 -0.88 7.96 -2.40 -0.02 -0.90 16 41 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.42 -5.37 8.47 -92.70 -0.79 -6.15 16 46 H 0.14 -1.29 8.14 -2.39 -0.02 -1.31 16 47 H 0.18 -2.60 8.07 -2.39 -0.02 -2.62 16 48 H 0.21 -1.02 6.35 -2.91 -0.02 -1.04 16 49 H 0.08 0.05 5.57 -2.39 -0.01 0.04 16 50 H 0.39 -2.29 8.74 -74.05 -0.65 -2.94 16 51 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 52 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 53 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 54 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 55 H 0.13 0.63 6.22 -2.91 -0.02 0.61 16 Total: 0.00 -34.22 470.28 3.27 -30.94 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: 0.21 Total: -13.83 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.90 Total: 11.26 kcal Atomic # 7 Polarization: -4.12 SS G_CDS: -4.33 Total: -8.45 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.96 Total: -13.24 kcal Atomic # 14 Polarization: -7.97 SS G_CDS: 2.63 Total: -5.34 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.18 Total: -1.34 kcal Total: -34.22 3.27 -30.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.367 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds