Wall clock time and date at job start Tue Mar 9 2021 15:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37869 * 126.45839 * 2 1 4 4 C 1.46687 * 126.23125 * 359.97438 * 3 2 1 5 5 O 1.21698 * 119.99527 * 0.02562 * 4 3 2 6 6 N 1.34767 * 119.99763 * 179.97438 * 4 3 2 7 7 C 1.46512 * 119.99808 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47024 * 180.02562 * 7 6 4 9 9 S 1.81395 * 109.46858 * 180.02562 * 8 7 6 10 10 C 1.81398 * 103.00064 * 174.34844 * 9 8 7 11 11 Si 1.86299 * 109.47442 * 78.44345 * 10 9 8 12 12 C 1.86297 * 109.47427 * 67.29820 * 11 10 9 13 13 C 1.86299 * 109.47409 * 187.30531 * 11 10 9 14 14 C 1.86301 * 109.46839 * 307.30203 * 11 10 9 15 15 N 1.37645 * 107.53820 * 179.76030 * 3 2 1 16 16 C 1.35539 * 108.64086 * 0.36504 * 15 3 2 17 17 C 1.50705 * 125.56372 * 179.89143 * 16 15 3 18 18 O 1.42898 * 109.47045 * 119.69630 * 17 16 15 19 19 Si 1.86295 * 109.46948 * 359.69616 * 17 16 15 20 20 H 1.48507 * 109.47209 * 59.99978 * 19 17 16 21 21 H 1.48503 * 109.47140 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47349 * 299.99806 * 19 17 16 23 23 C 1.35452 * 108.86955 * 359.63525 * 16 15 3 24 24 H 1.09001 * 109.46764 * 269.98944 * 1 2 3 25 25 H 1.08994 * 109.47250 * 29.99539 * 1 2 3 26 26 H 1.09001 * 109.46925 * 149.99929 * 1 2 3 27 27 H 0.97000 * 120.00731 * 359.97438 * 6 4 3 28 28 H 1.08997 * 109.46929 * 300.00075 * 7 6 4 29 29 H 1.09001 * 109.46930 * 60.00232 * 7 6 4 30 30 H 1.08997 * 109.47215 * 299.99761 * 8 7 6 31 31 H 1.09001 * 109.47191 * 60.00253 * 8 7 6 32 32 H 1.09006 * 109.47207 * 198.44498 * 10 9 8 33 33 H 1.09003 * 109.47251 * 318.43962 * 10 9 8 34 34 H 1.09005 * 109.46495 * 60.00179 * 12 11 10 35 35 H 1.08996 * 109.47442 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47376 * 300.00669 * 12 11 10 37 37 H 1.08995 * 109.47186 * 59.99646 * 13 11 10 38 38 H 1.08996 * 109.47435 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46977 * 299.99528 * 13 11 10 40 40 H 1.09003 * 109.47186 * 67.36567 * 14 11 10 41 41 H 1.09000 * 109.47108 * 187.36357 * 14 11 10 42 42 H 1.08999 * 109.47287 * 307.36262 * 14 11 10 43 43 H 0.96995 * 125.68325 * 180.24793 * 15 3 2 44 44 H 1.08994 * 109.47048 * 239.69764 * 17 16 15 45 45 H 0.96701 * 113.99953 * 300.00601 * 18 17 16 46 46 H 1.08000 * 126.06437 * 180.26674 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 -0.0005 5 8 0.7025 2.7765 -0.0006 6 7 2.8036 3.4998 0.0001 7 6 2.3677 4.8986 -0.0010 8 6 3.5931 5.8147 -0.0007 9 16 3.0533 7.5465 -0.0013 10 6 4.6110 8.4595 0.1732 11 14 5.4841 8.5183 -1.4715 12 6 4.5012 9.5639 -2.6594 13 6 7.1793 9.2582 -1.2487 14 6 5.6450 6.7911 -2.1512 15 7 3.6283 0.6626 0.0055 16 6 3.6218 -0.6928 0.0007 17 6 4.8434 -1.5753 0.0018 18 8 4.8346 -2.3994 1.1692 19 14 6.3753 -0.5150 0.0017 20 1 6.3834 0.3432 1.2136 21 1 7.5791 -1.3846 0.0035 22 1 6.3845 0.3413 -1.2114 23 6 2.3379 -1.1247 0.0003 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 3.7499 3.2868 0.0012 28 1 1.7700 5.0922 -0.8917 29 1 1.7681 5.0930 0.8882 30 1 4.1911 5.6212 0.8898 31 1 4.1924 5.6202 -0.8902 32 1 4.4013 9.4749 0.5098 33 1 5.2460 7.9584 0.9039 34 1 4.4071 10.5745 -2.2616 35 1 5.0123 9.5987 -3.6215 36 1 3.5094 9.1310 -2.7897 37 1 7.7543 8.6464 -0.5537 38 1 7.6899 9.2931 -2.2110 39 1 7.0852 10.2688 -0.8510 40 1 4.6569 6.4068 -2.4042 41 1 6.2678 6.8092 -3.0455 42 1 6.1044 6.1469 -1.4015 43 1 4.4190 1.2244 0.0102 44 1 4.8375 -2.2052 -0.8876 45 1 4.8391 -1.9045 2.0000 46 1 2.0137 -2.1548 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:02:24 Heat of formation + Delta-G solvation = -74.952452 kcal Electronic energy + Delta-G solvation = -23688.953906 eV Core-core repulsion = 20249.719429 eV Total energy + Delta-G solvation = -3439.234478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62769 -40.24146 -37.84519 -36.56220 -33.71032 -32.46355 -31.07403 -30.17213 -28.94913 -28.70389 -28.51151 -28.30162 -26.90633 -24.27920 -22.45526 -21.63186 -20.41407 -19.85080 -18.04577 -17.36730 -17.04055 -17.00707 -16.73391 -16.60537 -15.74299 -15.66232 -15.19838 -15.06734 -14.85228 -14.55649 -14.48940 -14.30554 -14.21645 -14.00282 -13.90942 -13.74789 -13.48995 -13.40094 -13.36382 -13.33407 -13.24855 -13.00919 -12.97012 -12.68377 -12.62963 -12.49219 -12.20220 -11.87166 -11.19536 -11.00363 -10.97601 -10.77907 -10.67839 -10.30809 -9.79573 -9.16371 -8.56928 0.31591 0.35699 0.79142 1.07011 1.10924 1.34581 1.38921 1.57361 1.62008 1.67012 1.84427 1.86937 2.13319 2.34870 2.41899 3.22928 3.45219 3.54916 3.68176 3.78581 4.06196 4.17644 4.18737 4.30217 4.37434 4.45829 4.51065 4.55669 4.56951 4.59334 4.64038 4.72395 4.73770 4.77219 4.78413 4.93919 5.04328 5.13190 5.23955 5.26898 5.34717 5.47475 5.50930 5.66491 5.92295 6.14154 6.33871 6.35157 7.08553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.066 4.066 3 C -0.053 4.053 4 C 0.592 3.408 5 O -0.515 6.515 6 N -0.734 5.734 7 C 0.137 3.863 8 C -0.130 4.130 9 S -0.213 6.213 10 C -0.384 4.384 11 Si 1.003 2.997 12 C -0.445 4.445 13 C -0.446 4.446 14 C -0.455 4.455 15 N -0.542 5.542 16 C 0.013 3.987 17 C -0.050 4.050 18 O -0.529 6.529 19 Si 0.920 3.080 20 H -0.248 1.248 21 H -0.234 1.234 22 H -0.246 1.246 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.393 0.607 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.408 0.592 44 H 0.132 0.868 45 H 0.378 0.622 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 0.670 -0.270 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 C -0.166 4.166 4 C 0.380 3.620 5 O -0.391 6.391 6 N -0.387 5.387 7 C 0.013 3.987 8 C -0.278 4.278 9 S 0.013 5.987 10 C -0.579 4.579 11 Si 1.200 2.800 12 C -0.553 4.553 13 C -0.555 4.555 14 C -0.562 4.562 15 N -0.143 5.143 16 C -0.103 4.103 17 C -0.162 4.162 18 O -0.333 6.333 19 Si 0.741 3.259 20 H -0.171 1.171 21 H -0.156 1.156 22 H -0.169 1.169 23 C -0.193 4.193 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.226 0.774 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.246 0.754 44 H 0.149 0.851 45 H 0.226 0.774 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.020 1.456 -0.742 5.280 hybrid contribution 1.879 -0.052 0.678 1.999 sum 6.900 1.404 -0.064 7.042 Atomic orbital electron populations 1.20400 0.88814 1.03263 1.02577 1.20062 0.96128 0.90487 1.00748 1.20130 0.83286 0.93375 1.19760 1.16993 0.85782 0.82842 0.76428 1.90864 1.15749 1.83051 1.49393 1.45870 1.09323 1.06250 1.77264 1.20998 0.95005 0.78330 1.04340 1.23968 1.01531 0.95652 1.06652 1.86896 1.14700 1.00592 1.96495 1.28107 1.02400 1.05687 1.21671 0.79202 0.66863 0.68191 0.65772 1.26070 1.09435 1.09233 1.10565 1.26093 1.17426 1.07116 1.04898 1.26354 1.04850 1.18159 1.06827 1.42003 1.07108 1.06535 1.58644 1.20926 0.98036 0.82422 1.08899 1.24443 1.00391 0.98504 0.92880 1.86576 1.96769 1.34876 1.15112 0.86106 0.78655 0.79531 0.81604 1.17130 1.15602 1.16921 1.20646 0.90365 0.99183 1.09107 0.91185 0.90019 0.91581 0.77425 0.89934 0.89956 0.89404 0.87847 0.86298 0.88611 0.91317 0.91186 0.90388 0.91317 0.90870 0.91025 0.90403 0.90608 0.91567 0.75386 0.85068 0.77429 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.20 9.83 36.01 0.35 0.15 16 2 C -0.07 -0.16 6.21 -104.16 -0.65 -0.81 16 3 C -0.05 -0.09 7.06 -81.98 -0.58 -0.67 16 4 C 0.59 1.54 7.79 -12.85 -0.10 1.44 16 5 O -0.52 -3.10 14.80 5.19 0.08 -3.02 16 6 N -0.73 0.44 5.55 -61.61 -0.34 0.10 16 7 C 0.14 -0.04 5.68 -4.04 -0.02 -0.06 16 8 C -0.13 0.28 5.73 37.16 0.21 0.49 16 9 S -0.21 0.06 20.94 -107.50 -2.25 -2.19 16 10 C -0.38 0.94 5.17 101.05 0.52 1.47 16 11 Si 1.00 -3.56 12.15 -169.99 -2.06 -5.63 16 12 C -0.44 0.76 8.65 101.05 0.87 1.63 16 13 C -0.45 1.20 8.65 101.05 0.87 2.07 16 14 C -0.45 1.41 7.09 101.05 0.72 2.12 16 15 N -0.54 0.47 5.47 -5.69 -0.03 0.44 16 16 C 0.01 -0.01 6.12 -81.95 -0.50 -0.51 16 17 C -0.05 0.11 2.98 36.01 0.11 0.22 16 18 O -0.53 0.65 12.87 -35.23 -0.45 0.20 16 19 Si 0.92 -2.79 26.24 -169.99 -4.46 -7.25 16 20 H -0.25 0.79 7.11 56.52 0.40 1.19 16 21 H -0.23 0.33 7.11 56.52 0.40 0.73 16 22 H -0.25 0.70 7.11 56.52 0.40 1.10 16 23 C -0.17 -0.19 10.64 -39.98 -0.43 -0.61 16 24 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.08 0.30 6.48 -51.93 -0.34 -0.03 16 26 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.39 -1.38 7.60 -40.82 -0.31 -1.69 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.10 -0.34 4.33 -51.92 -0.23 -0.57 16 32 H 0.12 -0.31 7.96 -51.92 -0.41 -0.72 16 33 H 0.10 -0.31 7.96 -51.92 -0.41 -0.73 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 40 H 0.08 -0.21 6.60 -51.93 -0.34 -0.55 16 41 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 42 H 0.07 -0.25 7.56 -51.93 -0.39 -0.64 16 43 H 0.41 -1.41 5.98 -40.82 -0.24 -1.66 16 44 H 0.13 -0.40 7.96 -51.93 -0.41 -0.81 16 45 H 0.38 -1.61 8.70 45.56 0.40 -1.21 16 46 H 0.15 0.04 8.06 -52.49 -0.42 -0.38 16 LS Contribution 386.61 15.07 5.83 5.83 Total: 0.00 -7.36 386.61 -9.24 -16.60 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -6.92 Total: -11.99 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 1.39 Total: 6.93 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -0.37 Total: 0.53 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -0.38 Total: -2.83 kcal Atomic # 14 Polarization: -6.35 SS G_CDS: -6.53 Total: -12.88 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.25 Total: -2.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -7.36 -9.24 -16.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.356 kcal (2) G-P(sol) polarization free energy of solvation -7.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds