Wall clock time and date at job start Tue Mar 9 2021 15:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.46975 * 2 1 4 4 C 1.86300 * 109.46978 * 239.99792 * 2 1 3 5 5 C 1.86305 * 109.46933 * 120.00087 * 2 1 3 6 6 S 1.81394 * 109.47246 * 59.05145 * 5 2 1 7 7 C 1.81397 * 103.00135 * 184.42302 * 6 5 2 8 8 C 1.52991 * 109.47689 * 175.57370 * 7 6 5 9 9 N 1.46494 * 109.47660 * 179.97438 * 8 7 6 10 10 C 1.34783 * 120.00410 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99755 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00204 * 180.02562 * 10 9 8 13 13 O 1.42901 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.35899 * 117.00027 * 180.02562 * 13 12 10 15 15 C 1.38707 * 120.05368 * 359.95071 * 14 13 12 16 16 C 1.38167 * 119.94123 * 180.02562 * 15 14 13 17 17 C 1.38251 * 120.05792 * 0.02949 * 16 15 14 18 18 C 1.38289 * 120.10514 * 0.02562 * 17 16 15 19 19 C 1.38124 * 120.05968 * 359.96318 * 18 17 16 20 20 C 1.50705 * 120.02590 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47200 * 104.99538 * 20 19 18 22 22 Si 1.86295 * 109.47098 * 344.99291 * 20 19 18 23 23 H 1.48509 * 109.47178 * 60.00443 * 22 20 19 24 24 H 1.48503 * 109.47077 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47594 * 300.00526 * 22 20 19 26 26 H 1.08998 * 109.47545 * 299.99849 * 1 2 3 27 27 H 1.08997 * 109.47652 * 60.00290 * 1 2 3 28 28 H 1.09009 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47086 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47171 * 299.99722 * 3 2 1 31 31 H 1.08993 * 109.47499 * 60.00013 * 3 2 1 32 32 H 1.08997 * 109.47421 * 297.55517 * 4 2 1 33 33 H 1.09000 * 109.46820 * 57.55693 * 4 2 1 34 34 H 1.09006 * 109.46961 * 177.55566 * 4 2 1 35 35 H 1.08998 * 109.46769 * 299.04772 * 5 2 1 36 36 H 1.09000 * 109.46478 * 179.04820 * 5 2 1 37 37 H 1.09007 * 109.47166 * 55.56922 * 7 6 5 38 38 H 1.09001 * 109.47186 * 295.57978 * 7 6 5 39 39 H 1.09007 * 109.47182 * 59.99562 * 8 7 6 40 40 H 1.09001 * 109.47303 * 300.00536 * 8 7 6 41 41 H 0.97008 * 119.99932 * 0.02562 * 9 8 7 42 42 H 1.09002 * 109.46695 * 59.99838 * 12 10 9 43 43 H 1.08997 * 109.47027 * 300.00413 * 12 10 9 44 44 H 1.08000 * 120.03382 * 0.04487 * 15 14 13 45 45 H 1.07995 * 119.97398 * 180.29990 * 16 15 14 46 46 H 1.07998 * 119.94697 * 180.02562 * 17 16 15 47 47 H 1.07999 * 119.96716 * 179.97438 * 18 17 16 48 48 H 1.08997 * 109.46472 * 224.99847 * 20 19 18 49 49 H 0.96697 * 113.99769 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5212 6 16 1.8563 -2.5801 1.5354 7 6 2.4434 -3.2183 3.1286 8 6 1.8966 -4.6307 3.3452 9 7 2.3712 -5.1463 4.6316 10 6 2.0138 -6.3813 5.0360 11 8 1.2987 -7.0656 4.3350 12 6 2.5016 -6.9115 6.3596 13 8 1.9918 -8.2312 6.5612 14 6 2.3398 -8.8572 7.7162 15 6 3.1558 -8.2151 8.6358 16 6 3.5086 -8.8539 9.8090 17 6 3.0495 -10.1323 10.0664 18 6 2.2368 -10.7750 9.1506 19 6 1.8811 -10.1406 7.9763 20 6 0.9949 -10.8414 6.9791 21 8 -0.3216 -10.2891 7.0409 22 14 0.9251 -12.6593 7.3803 23 1 0.3745 -12.8438 8.7471 24 1 0.0523 -13.3501 6.3972 25 1 2.2931 -13.2334 7.3161 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1206 2.2703 0.8899 32 1 2.1569 -1.9178 -1.4995 33 1 2.0853 -0.3904 -2.4105 34 1 3.5731 -0.8405 -1.5433 35 1 2.1346 -0.3547 2.4110 36 1 3.5738 -0.8931 1.5126 37 1 2.0964 -2.5673 3.9311 38 1 3.5331 -3.2465 3.1295 39 1 2.2437 -5.2817 2.5428 40 1 0.8069 -4.6025 3.3444 41 1 2.9429 -4.5989 5.1925 42 1 2.1540 -6.2607 7.1620 43 1 3.5912 -6.9392 6.3605 44 1 3.5149 -7.2165 8.4352 45 1 4.1400 -8.3526 10.5276 46 1 3.3260 -10.6298 10.9842 47 1 1.8797 -11.7738 9.3537 48 1 1.3990 -10.7060 5.9759 49 1 -0.9470 -10.6933 6.4241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:03:10 Heat of formation + Delta-G solvation = -122.944952 kcal Electronic energy + Delta-G solvation = -26012.626305 eV Core-core repulsion = 22189.828294 eV Total energy + Delta-G solvation = -3822.798010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 357.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53997 -40.50328 -38.43801 -37.34453 -36.41158 -32.89305 -32.29494 -31.10990 -30.14485 -29.23406 -28.79583 -28.50447 -28.42035 -26.54840 -24.47918 -23.30158 -22.43572 -21.67871 -19.32338 -18.41406 -18.31372 -17.50814 -17.49467 -16.92648 -16.90019 -16.60492 -16.54288 -15.73935 -15.44771 -15.26948 -15.06446 -14.98066 -14.83362 -14.70806 -14.27352 -14.21547 -14.08689 -13.85141 -13.77719 -13.60435 -13.59660 -13.40121 -13.22725 -13.20608 -13.11427 -12.95756 -12.85976 -12.68298 -12.17416 -12.02279 -11.72166 -11.63882 -11.44297 -11.13232 -10.88138 -10.87009 -10.75003 -10.26941 -10.11979 -9.93752 -9.16889 -8.67210 0.25123 0.36894 0.44703 1.24145 1.28556 1.48796 1.50938 1.51661 1.56517 1.63987 1.77262 1.91816 1.97079 2.48734 2.61762 2.69674 3.42923 3.54606 3.59945 3.71167 3.76401 3.85956 3.90580 3.94969 4.09336 4.14155 4.22126 4.28547 4.35624 4.52824 4.57766 4.60384 4.61271 4.62755 4.66193 4.74639 4.75180 4.75310 4.78702 4.82400 4.99380 5.15930 5.28649 5.36267 5.37535 5.51786 5.53190 5.56700 5.71416 6.19970 6.37197 6.79717 7.06270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.022 2.978 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.216 6.216 7 C -0.115 4.115 8 C 0.138 3.862 9 N -0.728 5.728 10 C 0.517 3.483 11 O -0.506 6.506 12 C 0.040 3.960 13 O -0.278 6.278 14 C 0.153 3.847 15 C -0.212 4.212 16 C -0.073 4.073 17 C -0.150 4.150 18 C -0.084 4.084 19 C -0.103 4.103 20 C -0.072 4.072 21 O -0.540 6.540 22 Si 0.945 3.055 23 H -0.248 1.248 24 H -0.255 1.255 25 H -0.249 1.249 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.402 0.598 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.077 0.923 49 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 4.557 1.599 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.216 2.784 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.010 5.990 7 C -0.263 4.263 8 C 0.014 3.986 9 N -0.384 5.384 10 C 0.301 3.699 11 O -0.379 6.379 12 C -0.039 4.039 13 O -0.190 6.190 14 C 0.107 3.893 15 C -0.231 4.231 16 C -0.091 4.091 17 C -0.168 4.168 18 C -0.102 4.102 19 C -0.104 4.104 20 C -0.183 4.183 21 O -0.346 6.346 22 Si 0.768 3.232 23 H -0.172 1.172 24 H -0.179 1.179 25 H -0.172 1.172 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.236 0.764 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.095 0.905 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.209 2.898 0.844 4.406 hybrid contribution 1.110 1.339 1.054 2.034 sum 4.320 4.236 1.898 6.341 Atomic orbital electron populations 1.26087 1.19904 1.05088 1.04379 0.78795 0.67761 0.67151 0.64657 1.26042 1.06295 1.17899 1.04880 1.26090 1.06171 1.08587 1.14686 1.28105 1.09088 0.99981 1.20471 1.86940 1.73876 1.13419 1.24787 1.23639 1.04063 0.99179 0.99456 1.21005 1.00289 0.92064 0.85280 1.45788 1.53845 1.16603 1.22159 1.20013 0.81068 0.81518 0.87270 1.90800 1.35105 1.56859 1.55159 1.22445 1.00026 0.84891 0.96527 1.86208 1.69297 1.27434 1.36036 1.18743 0.93679 0.91556 0.85331 1.21264 1.03708 1.01553 0.96558 1.21007 0.97699 0.94562 0.95864 1.21039 0.99997 0.95675 1.00139 1.20975 0.97037 0.99942 0.92212 1.18616 1.01782 0.93128 0.96835 1.24576 0.85091 1.08107 1.00493 1.86512 1.18870 1.64641 1.64551 0.85827 0.81758 0.74483 0.81171 1.17204 1.17906 1.17226 0.91253 0.91118 0.90488 0.91102 0.90595 0.91099 0.90563 0.91059 0.91250 0.88526 0.88589 0.89387 0.89400 0.90148 0.90042 0.76356 0.88739 0.88808 0.85217 0.85303 0.85253 0.85195 0.90545 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.60 8.65 101.05 0.87 1.47 16 2 Si 1.02 -3.00 12.30 -169.99 -2.09 -5.10 16 3 C -0.44 1.11 8.65 101.05 0.87 1.99 16 4 C -0.45 0.61 8.65 101.05 0.87 1.48 16 5 C -0.38 0.90 5.14 101.05 0.52 1.42 16 6 S -0.22 0.05 20.84 -107.50 -2.24 -2.19 16 7 C -0.12 0.23 6.05 37.15 0.22 0.46 16 8 C 0.14 -0.04 5.68 -4.05 -0.02 -0.07 16 9 N -0.73 1.02 5.56 -60.30 -0.33 0.68 16 10 C 0.52 0.97 7.91 -10.98 -0.09 0.88 16 11 O -0.51 -3.51 16.50 -14.35 -0.24 -3.75 16 12 C 0.04 -0.01 5.22 36.00 0.19 0.18 16 13 O -0.28 -1.06 9.00 -39.33 -0.35 -1.41 16 14 C 0.15 0.47 6.66 -39.22 -0.26 0.21 16 15 C -0.21 -0.14 9.04 -39.43 -0.36 -0.50 16 16 C -0.07 -0.01 10.04 -39.60 -0.40 -0.41 16 17 C -0.15 -0.11 10.04 -39.56 -0.40 -0.51 16 18 C -0.08 -0.17 8.66 -39.60 -0.34 -0.51 16 19 C -0.10 -0.35 5.30 -104.47 -0.55 -0.90 16 20 C -0.07 -0.19 2.37 36.01 0.09 -0.10 16 21 O -0.54 -1.85 12.86 -35.23 -0.45 -2.31 16 22 Si 0.95 0.94 25.49 -169.99 -4.33 -3.39 16 23 H -0.25 -0.38 6.73 56.52 0.38 0.00 16 24 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 25 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.08 -0.03 7.96 -51.92 -0.41 -0.44 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 32 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.10 -0.29 7.96 -51.93 -0.41 -0.71 16 36 H 0.10 -0.28 7.96 -51.92 -0.41 -0.70 16 37 H 0.09 -0.26 8.14 -51.92 -0.42 -0.68 16 38 H 0.09 -0.26 8.14 -51.92 -0.42 -0.68 16 39 H 0.08 0.08 8.14 -51.92 -0.42 -0.34 16 40 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.40 -1.96 8.47 -40.82 -0.35 -2.30 16 42 H 0.09 -0.25 7.66 -51.93 -0.40 -0.65 16 43 H 0.09 -0.29 7.66 -51.93 -0.40 -0.69 16 44 H 0.13 -0.29 6.30 -52.49 -0.33 -0.62 16 45 H 0.13 -0.29 8.06 -52.49 -0.42 -0.71 16 46 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 47 H 0.13 0.09 4.89 -52.49 -0.26 -0.17 16 48 H 0.08 0.19 7.83 -51.93 -0.41 -0.22 16 49 H 0.38 -0.29 8.74 45.56 0.40 0.11 16 LS Contribution 419.41 15.07 6.32 6.32 Total: 0.00 -9.75 419.41 -10.14 -19.90 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: -7.64 Total: -13.85 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 1.22 Total: 5.10 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -0.33 Total: 0.68 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -1.04 Total: -7.47 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: -6.42 Total: -8.49 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.24 Total: -2.19 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -9.75 -10.14 -19.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.049 kcal (2) G-P(sol) polarization free energy of solvation -9.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds