Wall clock time and date at job start Tue Mar 9 2021 15:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.46975 * 2 1 4 4 C 1.86300 * 109.46978 * 239.99792 * 2 1 3 5 5 C 1.86305 * 109.46933 * 120.00087 * 2 1 3 6 6 S 1.81394 * 109.47246 * 59.05145 * 5 2 1 7 7 C 1.81397 * 103.00135 * 184.42302 * 6 5 2 8 8 C 1.52991 * 109.47689 * 175.57370 * 7 6 5 9 9 N 1.46494 * 109.47660 * 179.97438 * 8 7 6 10 10 C 1.34783 * 120.00410 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99755 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00204 * 180.02562 * 10 9 8 13 13 O 1.42901 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.35899 * 117.00027 * 180.02562 * 13 12 10 15 15 C 1.38707 * 120.05368 * 359.95071 * 14 13 12 16 16 C 1.38167 * 119.94123 * 180.02562 * 15 14 13 17 17 C 1.38251 * 120.05792 * 0.02949 * 16 15 14 18 18 C 1.38289 * 120.10514 * 0.02562 * 17 16 15 19 19 C 1.38124 * 120.05968 * 359.96318 * 18 17 16 20 20 C 1.50705 * 120.02590 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47200 * 104.99538 * 20 19 18 22 22 Si 1.86295 * 109.47098 * 344.99291 * 20 19 18 23 23 H 1.48509 * 109.47178 * 60.00443 * 22 20 19 24 24 H 1.48503 * 109.47077 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47594 * 300.00526 * 22 20 19 26 26 H 1.08998 * 109.47545 * 299.99849 * 1 2 3 27 27 H 1.08997 * 109.47652 * 60.00290 * 1 2 3 28 28 H 1.09009 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47086 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47171 * 299.99722 * 3 2 1 31 31 H 1.08993 * 109.47499 * 60.00013 * 3 2 1 32 32 H 1.08997 * 109.47421 * 297.55517 * 4 2 1 33 33 H 1.09000 * 109.46820 * 57.55693 * 4 2 1 34 34 H 1.09006 * 109.46961 * 177.55566 * 4 2 1 35 35 H 1.08998 * 109.46769 * 299.04772 * 5 2 1 36 36 H 1.09000 * 109.46478 * 179.04820 * 5 2 1 37 37 H 1.09007 * 109.47166 * 55.56922 * 7 6 5 38 38 H 1.09001 * 109.47186 * 295.57978 * 7 6 5 39 39 H 1.09007 * 109.47182 * 59.99562 * 8 7 6 40 40 H 1.09001 * 109.47303 * 300.00536 * 8 7 6 41 41 H 0.97008 * 119.99932 * 0.02562 * 9 8 7 42 42 H 1.09002 * 109.46695 * 59.99838 * 12 10 9 43 43 H 1.08997 * 109.47027 * 300.00413 * 12 10 9 44 44 H 1.08000 * 120.03382 * 0.04487 * 15 14 13 45 45 H 1.07995 * 119.97398 * 180.29990 * 16 15 14 46 46 H 1.07998 * 119.94697 * 180.02562 * 17 16 15 47 47 H 1.07999 * 119.96716 * 179.97438 * 18 17 16 48 48 H 1.08997 * 109.46472 * 224.99847 * 20 19 18 49 49 H 0.96697 * 113.99769 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5212 6 16 1.8563 -2.5801 1.5354 7 6 2.4434 -3.2183 3.1286 8 6 1.8966 -4.6307 3.3452 9 7 2.3712 -5.1463 4.6316 10 6 2.0138 -6.3813 5.0360 11 8 1.2987 -7.0656 4.3350 12 6 2.5016 -6.9115 6.3596 13 8 1.9918 -8.2312 6.5612 14 6 2.3398 -8.8572 7.7162 15 6 3.1558 -8.2151 8.6358 16 6 3.5086 -8.8539 9.8090 17 6 3.0495 -10.1323 10.0664 18 6 2.2368 -10.7750 9.1506 19 6 1.8811 -10.1406 7.9763 20 6 0.9949 -10.8414 6.9791 21 8 -0.3216 -10.2891 7.0409 22 14 0.9251 -12.6593 7.3803 23 1 0.3745 -12.8438 8.7471 24 1 0.0523 -13.3501 6.3972 25 1 2.2931 -13.2334 7.3161 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1206 2.2703 0.8899 32 1 2.1569 -1.9178 -1.4995 33 1 2.0853 -0.3904 -2.4105 34 1 3.5731 -0.8405 -1.5433 35 1 2.1346 -0.3547 2.4110 36 1 3.5738 -0.8931 1.5126 37 1 2.0964 -2.5673 3.9311 38 1 3.5331 -3.2465 3.1295 39 1 2.2437 -5.2817 2.5428 40 1 0.8069 -4.6025 3.3444 41 1 2.9429 -4.5989 5.1925 42 1 2.1540 -6.2607 7.1620 43 1 3.5912 -6.9392 6.3605 44 1 3.5149 -7.2165 8.4352 45 1 4.1400 -8.3526 10.5276 46 1 3.3260 -10.6298 10.9842 47 1 1.8797 -11.7738 9.3537 48 1 1.3990 -10.7060 5.9759 49 1 -0.9470 -10.6933 6.4241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:03:09 Heat of formation + Delta-G solvation = -120.031278 kcal Electronic energy + Delta-G solvation = -26012.499958 eV Core-core repulsion = 22189.828294 eV Total energy + Delta-G solvation = -3822.671664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 357.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60943 -40.61829 -38.51596 -37.49822 -36.52539 -32.94084 -32.31576 -31.12084 -29.97842 -29.18109 -28.64466 -28.32161 -28.30676 -26.64198 -24.45929 -23.32163 -22.49413 -21.76360 -19.35817 -18.52646 -18.43885 -17.56077 -17.53814 -16.97161 -16.89430 -16.61479 -16.51132 -15.82372 -15.48224 -15.30791 -15.07114 -15.00666 -14.80861 -14.59779 -14.30989 -14.10563 -13.97334 -13.83761 -13.69284 -13.58062 -13.51333 -13.29175 -13.12980 -13.09360 -13.02979 -12.98675 -12.85191 -12.66300 -12.21587 -12.07761 -11.77594 -11.75092 -11.31962 -11.17953 -10.79191 -10.74514 -10.63383 -10.34508 -10.27405 -9.97481 -9.22714 -8.63208 0.21302 0.39879 0.47887 1.12832 1.37561 1.42729 1.44279 1.47260 1.57512 1.79440 1.84697 1.94074 2.13671 2.61901 2.65264 2.66823 3.48449 3.53276 3.62988 3.80116 3.82896 3.92717 3.97156 4.05287 4.15833 4.25281 4.32660 4.33309 4.34212 4.50966 4.62941 4.64309 4.76389 4.78472 4.81566 4.82336 4.86192 4.86444 4.87262 4.95079 4.96039 5.15249 5.26835 5.36283 5.50181 5.56933 5.65776 5.66584 5.72968 6.23018 6.40257 6.77444 7.03786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.084 2.916 3 C -0.448 4.448 4 C -0.465 4.465 5 C -0.379 4.379 6 S -0.272 6.272 7 C -0.098 4.098 8 C 0.140 3.860 9 N -0.707 5.707 10 C 0.513 3.487 11 O -0.569 6.569 12 C 0.038 3.962 13 O -0.311 6.311 14 C 0.131 3.869 15 C -0.210 4.210 16 C -0.075 4.075 17 C -0.156 4.156 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.083 4.083 21 O -0.562 6.562 22 Si 0.988 3.012 23 H -0.255 1.255 24 H -0.259 1.259 25 H -0.253 1.253 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.423 0.577 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.150 0.850 47 H 0.136 0.864 48 H 0.065 0.935 49 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 6.136 3.487 9.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.275 2.725 3 C -0.557 4.557 4 C -0.572 4.572 5 C -0.571 4.571 6 S -0.047 6.047 7 C -0.246 4.246 8 C 0.015 3.985 9 N -0.363 5.363 10 C 0.299 3.701 11 O -0.447 6.447 12 C -0.040 4.040 13 O -0.223 6.223 14 C 0.085 3.915 15 C -0.229 4.229 16 C -0.093 4.093 17 C -0.174 4.174 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.192 4.192 21 O -0.370 6.370 22 Si 0.811 3.189 23 H -0.179 1.179 24 H -0.183 1.183 25 H -0.177 1.177 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.261 0.739 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.178 0.822 45 H 0.176 0.824 46 H 0.168 0.832 47 H 0.153 0.847 48 H 0.083 0.917 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.099 4.518 2.729 7.339 hybrid contribution 0.531 0.909 0.444 1.142 sum 5.630 5.427 3.173 8.439 Atomic orbital electron populations 1.26331 1.22178 1.04181 1.04400 0.77823 0.65378 0.66262 0.63041 1.26095 1.06690 1.17837 1.05086 1.26333 1.06481 1.08152 1.16193 1.28218 1.09822 0.97773 1.21309 1.87229 1.74791 1.16004 1.26704 1.23552 1.04774 0.97756 0.98514 1.20874 0.99292 0.93056 0.85233 1.45608 1.53072 1.15817 1.21820 1.20557 0.80101 0.81743 0.87671 1.90773 1.38107 1.58684 1.57105 1.22701 1.01783 0.83873 0.95676 1.86158 1.70271 1.29189 1.36723 1.19002 0.94784 0.91872 0.85815 1.21624 1.02590 1.02692 0.95965 1.21408 0.97401 0.94333 0.96110 1.21389 0.99329 0.96190 1.00500 1.21157 0.97773 1.00450 0.92312 1.18930 1.02752 0.94106 0.97695 1.24816 0.84600 1.09679 1.00113 1.86459 1.19685 1.65612 1.65246 0.85199 0.81022 0.72433 0.80285 1.17898 1.18343 1.17715 0.91064 0.91275 0.91842 0.90597 0.90739 0.90599 0.91893 0.91239 0.91015 0.87243 0.87394 0.87721 0.87761 0.91957 0.91932 0.73900 0.85978 0.85538 0.82222 0.82450 0.83221 0.84687 0.91674 0.75980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.89 8.65 113.37 0.98 1.87 16 2 Si 1.08 -6.62 12.30 68.60 0.84 -5.78 16 3 C -0.45 2.76 8.65 113.37 0.98 3.74 16 4 C -0.47 0.92 8.65 113.37 0.98 1.90 16 5 C -0.38 2.17 5.14 113.37 0.58 2.76 16 6 S -0.27 0.00 20.84 -56.49 -1.18 -1.17 16 7 C -0.10 0.46 6.05 71.98 0.44 0.90 16 8 C 0.14 0.04 5.68 86.38 0.49 0.53 16 9 N -0.71 2.16 5.56 -463.07 -2.57 -0.41 16 10 C 0.51 2.34 7.91 87.66 0.69 3.03 16 11 O -0.57 -9.46 16.50 16.00 0.26 -9.20 16 12 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 13 O -0.31 -2.72 9.00 -73.38 -0.66 -3.38 16 14 C 0.13 0.88 6.66 22.50 0.15 1.03 16 15 C -0.21 0.02 9.04 22.37 0.20 0.22 16 16 C -0.07 0.11 10.04 22.26 0.22 0.34 16 17 C -0.16 -0.09 10.04 22.29 0.22 0.13 16 18 C -0.10 -0.45 8.66 22.25 0.19 -0.26 16 19 C -0.13 -1.09 5.30 -19.77 -0.10 -1.19 16 20 C -0.08 -0.61 2.37 71.24 0.17 -0.44 16 21 O -0.56 -5.18 12.86 -148.98 -1.92 -7.10 16 22 Si 0.99 3.05 25.49 68.60 1.75 4.80 16 23 H -0.25 -0.96 6.73 99.48 0.67 -0.29 16 24 H -0.26 -0.83 7.11 99.48 0.71 -0.13 16 25 H -0.25 -0.87 7.11 99.48 0.71 -0.16 16 26 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.06 0.06 7.96 -2.38 -0.02 0.04 16 29 H 0.07 -0.51 7.96 -2.38 -0.02 -0.53 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 32 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 33 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 35 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 36 H 0.11 -0.84 7.96 -2.39 -0.02 -0.86 16 37 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.42 -4.90 8.47 -92.70 -0.79 -5.69 16 42 H 0.12 -0.87 7.66 -2.39 -0.02 -0.89 16 43 H 0.13 -1.04 7.66 -2.39 -0.02 -1.06 16 44 H 0.16 -1.18 6.30 -2.91 -0.02 -1.19 16 45 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 46 H 0.15 -0.65 8.06 -2.91 -0.02 -0.67 16 47 H 0.14 0.29 4.89 -2.91 -0.01 0.28 16 48 H 0.07 0.54 7.83 -2.39 -0.02 0.52 16 49 H 0.39 0.36 8.74 -74.06 -0.65 -0.29 16 Total: 0.00 -26.52 419.41 3.33 -23.19 By element: Atomic # 1 Polarization: -16.04 SS G_CDS: 0.23 Total: -15.82 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.57 Total: 14.86 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.57 Total: -0.41 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -2.31 Total: -19.67 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.59 Total: -0.98 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.18 Total: -1.17 kcal Total: -26.52 3.33 -23.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.844 kcal (2) G-P(sol) polarization free energy of solvation -26.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds