Wall clock time and date at job start Tue Mar 9 2021 15:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.46943 * 2 1 4 4 C 1.86298 * 109.46761 * 240.00464 * 2 1 3 5 5 C 1.86291 * 109.47359 * 120.00492 * 2 1 3 6 6 S 1.81394 * 109.47459 * 59.04681 * 5 2 1 7 7 C 1.81399 * 103.00410 * 184.42295 * 6 5 2 8 8 C 1.52999 * 109.47286 * 175.57579 * 7 6 5 9 9 N 1.46504 * 109.47010 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99715 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00459 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99812 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47222 * 180.02562 * 12 10 9 14 14 O 1.42899 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.35902 * 117.00301 * 179.97438 * 14 13 12 16 16 C 1.38715 * 120.05124 * 359.71913 * 15 14 13 17 17 C 1.38170 * 119.93879 * 179.72024 * 16 15 14 18 18 C 1.38238 * 120.05643 * 0.58329 * 17 16 15 19 19 C 1.38290 * 120.11346 * 359.67032 * 18 17 16 20 20 C 1.50700 * 119.97152 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47061 * 245.02232 * 20 19 18 22 22 Si 1.86299 * 109.47385 * 5.02402 * 20 19 18 23 23 H 1.48504 * 109.47074 * 300.00089 * 22 20 19 24 24 H 1.48497 * 109.46965 * 60.00058 * 22 20 19 25 25 H 1.48497 * 109.47109 * 179.97438 * 22 20 19 26 26 C 1.38127 * 120.05377 * 0.04944 * 19 18 17 27 27 H 1.09003 * 109.46922 * 299.99403 * 1 2 3 28 28 H 1.09001 * 109.47675 * 59.99733 * 1 2 3 29 29 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47153 * 300.00587 * 3 2 1 32 32 H 1.09003 * 109.46824 * 60.00536 * 3 2 1 33 33 H 1.09001 * 109.47534 * 297.55188 * 4 2 1 34 34 H 1.09005 * 109.47434 * 57.55724 * 4 2 1 35 35 H 1.09006 * 109.46916 * 177.55051 * 4 2 1 36 36 H 1.09001 * 109.47199 * 299.04466 * 5 2 1 37 37 H 1.08997 * 109.47212 * 179.05216 * 5 2 1 38 38 H 1.08997 * 109.46993 * 55.57639 * 7 6 5 39 39 H 1.08998 * 109.47213 * 295.58213 * 7 6 5 40 40 H 1.09007 * 109.46770 * 60.00627 * 8 7 6 41 41 H 1.08989 * 109.47421 * 300.00235 * 8 7 6 42 42 H 0.97004 * 119.99880 * 0.02562 * 9 8 7 43 43 H 1.08997 * 109.47139 * 60.00462 * 12 10 9 44 44 H 1.09003 * 109.46990 * 300.00500 * 12 10 9 45 45 H 1.08997 * 109.47440 * 59.99723 * 13 12 10 46 46 H 1.09003 * 109.46793 * 299.99698 * 13 12 10 47 47 H 1.07997 * 120.03136 * 0.02562 * 16 15 14 48 48 H 1.08003 * 119.97156 * 180.27308 * 17 16 15 49 49 H 1.08002 * 119.94207 * 179.69909 * 18 17 16 50 50 H 1.08998 * 109.46936 * 125.02928 * 20 19 18 51 51 H 0.96697 * 113.99934 * 180.02562 * 21 20 19 52 52 H 1.07993 * 120.02607 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 16 1.8564 -2.5801 1.5352 7 6 2.4437 -3.2185 3.1284 8 6 1.8967 -4.6309 3.3448 9 7 2.3716 -5.1466 4.6312 10 6 2.0133 -6.3812 5.0359 11 8 1.2981 -7.0654 4.3350 12 6 2.5012 -6.9115 6.3595 13 6 1.9544 -8.3239 6.5759 14 8 2.4166 -8.8265 7.8312 15 6 2.0183 -10.0784 8.1790 16 6 1.1947 -10.8057 7.3323 17 6 0.7958 -12.0805 7.6856 18 6 1.2069 -12.6266 8.8872 19 6 2.0237 -11.9015 9.7354 20 6 2.4705 -12.5002 11.0443 21 8 1.9168 -11.7479 12.1258 22 14 1.8849 -14.2654 11.1519 23 1 0.4024 -14.3010 11.0717 24 1 2.4603 -15.0472 10.0281 25 1 2.3257 -14.8555 12.4414 26 6 2.4300 -10.6289 9.3842 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7566 -0.0005 31 1 2.1205 2.2703 -0.8899 32 1 2.1207 2.2702 0.8901 33 1 2.1568 -1.9177 -1.4997 34 1 2.0852 -0.3901 -2.4107 35 1 3.5731 -0.8402 -1.5435 36 1 2.1348 -0.3548 2.4109 37 1 3.5739 -0.8930 1.5125 38 1 2.0966 -2.5675 3.9308 39 1 3.5333 -3.2466 3.1291 40 1 2.2439 -5.2818 2.5424 41 1 0.8072 -4.6027 3.3441 42 1 2.9433 -4.5992 5.1920 43 1 2.1545 -6.2604 7.1619 44 1 3.5909 -6.9400 6.3600 45 1 2.3015 -8.9748 5.7735 46 1 0.8648 -8.2956 6.5753 47 1 0.8696 -10.3778 6.3955 48 1 0.1581 -12.6489 7.0247 49 1 0.8900 -13.6213 9.1637 50 1 3.5585 -12.4740 11.1032 51 1 2.1635 -12.0772 13.0008 52 1 3.0675 -10.0630 10.0472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:03:39 Heat of formation + Delta-G solvation = -134.832086 kcal Electronic energy + Delta-G solvation = -26973.281246 eV Core-core repulsion = 22994.430152 eV Total energy + Delta-G solvation = -3978.851094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30572 -40.71383 -38.97930 -37.30004 -36.51057 -33.52266 -32.50143 -31.76018 -30.60799 -30.13023 -28.92009 -28.51284 -28.42437 -26.99439 -25.67950 -23.79102 -23.57079 -21.96388 -21.42907 -19.14261 -18.47807 -17.98857 -17.53754 -17.45282 -17.22322 -17.04473 -16.71199 -16.65765 -15.79306 -15.67255 -15.58950 -15.07559 -14.89970 -14.83905 -14.67016 -14.42573 -14.27933 -14.21574 -14.05898 -14.02028 -13.80987 -13.60328 -13.41723 -13.38769 -13.22894 -13.21424 -13.11797 -13.02850 -12.90089 -12.77838 -12.33458 -12.05696 -11.85164 -11.76343 -11.58350 -11.44641 -11.20427 -10.91840 -10.88309 -10.77286 -10.37507 -10.26363 -9.79892 -9.14085 -8.67572 0.31290 0.38581 0.51289 1.14141 1.29091 1.45361 1.49961 1.52038 1.58159 1.76238 1.77033 1.91087 1.94098 2.48365 2.53781 2.73797 3.42874 3.47185 3.55796 3.71311 3.81384 3.83642 3.92270 3.96702 4.09289 4.12683 4.22514 4.26741 4.30414 4.34115 4.50251 4.57535 4.57862 4.60354 4.62662 4.63356 4.65909 4.74283 4.74832 4.75413 4.76851 4.78220 4.81992 5.07263 5.18732 5.35429 5.36184 5.47559 5.52737 5.55757 5.56144 5.76863 6.26113 6.45380 6.58216 7.04270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.383 4.383 6 S -0.217 6.217 7 C -0.115 4.115 8 C 0.135 3.865 9 N -0.728 5.728 10 C 0.521 3.479 11 O -0.534 6.534 12 C -0.140 4.140 13 C 0.074 3.926 14 O -0.316 6.316 15 C 0.132 3.868 16 C -0.202 4.202 17 C -0.072 4.072 18 C -0.161 4.161 19 C -0.038 4.038 20 C -0.083 4.083 21 O -0.543 6.543 22 Si 0.950 3.050 23 H -0.247 1.247 24 H -0.249 1.249 25 H -0.257 1.257 26 C -0.122 4.122 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.403 0.597 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.122 0.878 50 H 0.078 0.922 51 H 0.380 0.620 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 3.462 1.141 5.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.216 2.784 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.008 5.992 7 C -0.263 4.263 8 C 0.011 3.989 9 N -0.382 5.382 10 C 0.307 3.693 11 O -0.411 6.411 12 C -0.180 4.180 13 C -0.002 4.002 14 O -0.230 6.230 15 C 0.087 3.913 16 C -0.221 4.221 17 C -0.090 4.090 18 C -0.179 4.179 19 C -0.038 4.038 20 C -0.193 4.193 21 O -0.349 6.349 22 Si 0.773 3.227 23 H -0.171 1.171 24 H -0.173 1.173 25 H -0.182 1.182 26 C -0.140 4.140 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.238 0.762 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.151 0.849 48 H 0.149 0.851 49 H 0.140 0.860 50 H 0.096 0.904 51 H 0.228 0.772 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.915 2.039 -0.445 2.833 hybrid contribution 1.414 1.096 1.599 2.400 sum 3.330 3.134 1.154 4.716 Atomic orbital electron populations 1.26084 1.19891 1.05071 1.04379 0.78806 0.67778 0.67180 0.64674 1.26041 1.06304 1.17880 1.04883 1.26088 1.06178 1.08569 1.14673 1.28102 1.09096 0.99963 1.20463 1.86920 1.73881 1.13461 1.24899 1.23643 1.04066 0.99242 0.99381 1.21011 1.00197 0.92085 0.85643 1.45942 1.53364 1.16998 1.21896 1.20302 0.80253 0.81200 0.87524 1.90770 1.36738 1.57319 1.56237 1.21458 1.03926 0.96793 0.95857 1.22412 0.99749 0.93782 0.84223 1.85963 1.70361 1.28474 1.38220 1.18918 0.94337 0.84059 0.94000 1.21383 1.02635 0.96694 1.01405 1.20880 0.97900 0.94418 0.95819 1.20915 1.00467 1.00555 0.95955 1.19010 0.96843 0.94003 0.93986 1.24771 1.00902 1.06842 0.86807 1.86521 1.75067 1.57176 1.16154 0.85686 0.81634 0.74244 0.81152 1.17071 1.17264 1.18154 1.20200 1.03624 0.95202 0.94994 0.91252 0.91114 0.90504 0.91093 0.90592 0.91093 0.90575 0.91059 0.91244 0.88527 0.88587 0.89415 0.89419 0.90246 0.90158 0.76203 0.87373 0.87391 0.90855 0.90863 0.84910 0.85148 0.86035 0.90396 0.77217 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.60 8.65 101.05 0.87 1.47 16 2 Si 1.02 -2.96 12.30 -169.99 -2.09 -5.05 16 3 C -0.44 1.09 8.65 101.05 0.87 1.97 16 4 C -0.45 0.60 8.65 101.05 0.87 1.47 16 5 C -0.38 0.87 5.14 101.05 0.52 1.39 16 6 S -0.22 0.05 20.84 -107.50 -2.24 -2.19 16 7 C -0.12 0.22 6.05 37.16 0.22 0.45 16 8 C 0.13 -0.06 5.68 -4.04 -0.02 -0.09 16 9 N -0.73 1.16 5.56 -60.29 -0.33 0.83 16 10 C 0.52 0.36 7.83 -10.99 -0.09 0.27 16 11 O -0.53 -2.62 15.98 5.56 0.09 -2.53 16 12 C -0.14 0.21 6.07 -27.88 -0.17 0.04 16 13 C 0.07 0.06 4.03 37.16 0.15 0.21 16 14 O -0.32 -0.78 10.14 -19.43 -0.20 -0.98 16 15 C 0.13 0.42 6.69 -39.22 -0.26 0.15 16 16 C -0.20 -0.48 9.04 -39.43 -0.36 -0.84 16 17 C -0.07 -0.13 10.04 -39.61 -0.40 -0.53 16 18 C -0.16 -0.35 8.67 -39.56 -0.34 -0.70 16 19 C -0.04 -0.10 5.38 -104.64 -0.56 -0.66 16 20 C -0.08 -0.03 2.79 36.01 0.10 0.07 16 21 O -0.54 -0.43 12.81 -35.23 -0.45 -0.88 16 22 Si 0.95 -0.16 25.14 -169.99 -4.27 -4.44 16 23 H -0.25 -0.30 7.04 56.52 0.40 0.09 16 24 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 25 H -0.26 0.06 7.11 56.52 0.40 0.46 16 26 C -0.12 -0.37 9.62 -39.43 -0.38 -0.75 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.08 -0.03 7.96 -51.92 -0.41 -0.45 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.10 -0.28 7.96 -51.92 -0.41 -0.70 16 37 H 0.10 -0.27 7.96 -51.93 -0.41 -0.69 16 38 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 39 H 0.09 -0.24 8.14 -51.92 -0.42 -0.66 16 40 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.08 0.07 8.14 -51.94 -0.42 -0.35 16 42 H 0.40 -1.84 8.47 -40.82 -0.35 -2.19 16 43 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 44 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 45 H 0.07 0.08 7.63 -51.93 -0.40 -0.32 16 46 H 0.07 0.09 7.61 -51.93 -0.39 -0.30 16 47 H 0.13 0.16 6.30 -52.49 -0.33 -0.17 16 48 H 0.13 -0.05 8.06 -52.48 -0.42 -0.47 16 49 H 0.12 0.10 4.86 -52.49 -0.26 -0.16 16 50 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 51 H 0.38 -1.45 8.74 45.56 0.40 -1.05 16 52 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 441.15 15.07 6.65 6.65 Total: 0.00 -8.45 441.15 -10.28 -18.74 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -8.47 Total: -14.09 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 1.04 Total: 3.95 kcal Atomic # 7 Polarization: 1.16 SS G_CDS: -0.33 Total: 0.83 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.56 Total: -4.39 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: -6.36 Total: -9.48 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.24 Total: -2.19 kcal Total LS contribution 6.65 Total: 6.65 kcal Total: -8.45 -10.28 -18.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.096 kcal (2) G-P(sol) polarization free energy of solvation -8.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds