Wall clock time and date at job start Tue Mar 9 2021 15:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.46943 * 2 1 4 4 C 1.86298 * 109.46761 * 240.00464 * 2 1 3 5 5 C 1.86291 * 109.47359 * 120.00492 * 2 1 3 6 6 S 1.81394 * 109.47459 * 59.04681 * 5 2 1 7 7 C 1.81399 * 103.00410 * 184.42295 * 6 5 2 8 8 C 1.52999 * 109.47286 * 175.57579 * 7 6 5 9 9 N 1.46504 * 109.47010 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99715 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00459 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99812 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47222 * 180.02562 * 12 10 9 14 14 O 1.42899 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.35902 * 117.00301 * 179.97438 * 14 13 12 16 16 C 1.38715 * 120.05124 * 359.71913 * 15 14 13 17 17 C 1.38170 * 119.93879 * 179.72024 * 16 15 14 18 18 C 1.38238 * 120.05643 * 0.58329 * 17 16 15 19 19 C 1.38290 * 120.11346 * 359.67032 * 18 17 16 20 20 C 1.50700 * 119.97152 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47061 * 245.02232 * 20 19 18 22 22 Si 1.86299 * 109.47385 * 5.02402 * 20 19 18 23 23 H 1.48504 * 109.47074 * 300.00089 * 22 20 19 24 24 H 1.48497 * 109.46965 * 60.00058 * 22 20 19 25 25 H 1.48497 * 109.47109 * 179.97438 * 22 20 19 26 26 C 1.38127 * 120.05377 * 0.04944 * 19 18 17 27 27 H 1.09003 * 109.46922 * 299.99403 * 1 2 3 28 28 H 1.09001 * 109.47675 * 59.99733 * 1 2 3 29 29 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47153 * 300.00587 * 3 2 1 32 32 H 1.09003 * 109.46824 * 60.00536 * 3 2 1 33 33 H 1.09001 * 109.47534 * 297.55188 * 4 2 1 34 34 H 1.09005 * 109.47434 * 57.55724 * 4 2 1 35 35 H 1.09006 * 109.46916 * 177.55051 * 4 2 1 36 36 H 1.09001 * 109.47199 * 299.04466 * 5 2 1 37 37 H 1.08997 * 109.47212 * 179.05216 * 5 2 1 38 38 H 1.08997 * 109.46993 * 55.57639 * 7 6 5 39 39 H 1.08998 * 109.47213 * 295.58213 * 7 6 5 40 40 H 1.09007 * 109.46770 * 60.00627 * 8 7 6 41 41 H 1.08989 * 109.47421 * 300.00235 * 8 7 6 42 42 H 0.97004 * 119.99880 * 0.02562 * 9 8 7 43 43 H 1.08997 * 109.47139 * 60.00462 * 12 10 9 44 44 H 1.09003 * 109.46990 * 300.00500 * 12 10 9 45 45 H 1.08997 * 109.47440 * 59.99723 * 13 12 10 46 46 H 1.09003 * 109.46793 * 299.99698 * 13 12 10 47 47 H 1.07997 * 120.03136 * 0.02562 * 16 15 14 48 48 H 1.08003 * 119.97156 * 180.27308 * 17 16 15 49 49 H 1.08002 * 119.94207 * 179.69909 * 18 17 16 50 50 H 1.08998 * 109.46936 * 125.02928 * 20 19 18 51 51 H 0.96697 * 113.99934 * 180.02562 * 21 20 19 52 52 H 1.07993 * 120.02607 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 16 1.8564 -2.5801 1.5352 7 6 2.4437 -3.2185 3.1284 8 6 1.8967 -4.6309 3.3448 9 7 2.3716 -5.1466 4.6312 10 6 2.0133 -6.3812 5.0359 11 8 1.2981 -7.0654 4.3350 12 6 2.5012 -6.9115 6.3595 13 6 1.9544 -8.3239 6.5759 14 8 2.4166 -8.8265 7.8312 15 6 2.0183 -10.0784 8.1790 16 6 1.1947 -10.8057 7.3323 17 6 0.7958 -12.0805 7.6856 18 6 1.2069 -12.6266 8.8872 19 6 2.0237 -11.9015 9.7354 20 6 2.4705 -12.5002 11.0443 21 8 1.9168 -11.7479 12.1258 22 14 1.8849 -14.2654 11.1519 23 1 0.4024 -14.3010 11.0717 24 1 2.4603 -15.0472 10.0281 25 1 2.3257 -14.8555 12.4414 26 6 2.4300 -10.6289 9.3842 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7566 -0.0005 31 1 2.1205 2.2703 -0.8899 32 1 2.1207 2.2702 0.8901 33 1 2.1568 -1.9177 -1.4997 34 1 2.0852 -0.3901 -2.4107 35 1 3.5731 -0.8402 -1.5435 36 1 2.1348 -0.3548 2.4109 37 1 3.5739 -0.8930 1.5125 38 1 2.0966 -2.5675 3.9308 39 1 3.5333 -3.2466 3.1291 40 1 2.2439 -5.2818 2.5424 41 1 0.8072 -4.6027 3.3441 42 1 2.9433 -4.5992 5.1920 43 1 2.1545 -6.2604 7.1619 44 1 3.5909 -6.9400 6.3600 45 1 2.3015 -8.9748 5.7735 46 1 0.8648 -8.2956 6.5753 47 1 0.8696 -10.3778 6.3955 48 1 0.1581 -12.6489 7.0247 49 1 0.8900 -13.6213 9.1637 50 1 3.5585 -12.4740 11.1032 51 1 2.1635 -12.0772 13.0008 52 1 3.0675 -10.0630 10.0472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310322_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:03:39 Heat of formation + Delta-G solvation = -130.567586 kcal Electronic energy + Delta-G solvation = -26973.096324 eV Core-core repulsion = 22994.430152 eV Total energy + Delta-G solvation = -3978.666172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41713 -40.80659 -39.06916 -37.32966 -36.55274 -33.55944 -32.60930 -31.75552 -30.67664 -29.96737 -28.74719 -28.32792 -28.30863 -27.05292 -25.69719 -23.76850 -23.69786 -22.04964 -21.47102 -19.22829 -18.47145 -18.04988 -17.58266 -17.49441 -17.28565 -17.06745 -16.72218 -16.68051 -15.85554 -15.69579 -15.60307 -14.98440 -14.92470 -14.68592 -14.66492 -14.52643 -14.26421 -14.10507 -14.04359 -13.95605 -13.65526 -13.50716 -13.45269 -13.28677 -13.13317 -13.10548 -13.01976 -12.98914 -12.92981 -12.78369 -12.37520 -12.10891 -11.89045 -11.83426 -11.64931 -11.32486 -11.25327 -10.79883 -10.74762 -10.63952 -10.37223 -10.29101 -9.92432 -9.30313 -8.63510 0.16883 0.35049 0.50177 1.15431 1.45484 1.46517 1.47686 1.52869 1.70551 1.80261 1.92495 1.93816 2.12696 2.52976 2.60880 2.64838 3.44282 3.52319 3.62222 3.78910 3.82794 3.84720 3.88060 3.96698 4.04692 4.21794 4.23259 4.32943 4.33500 4.35296 4.48045 4.61040 4.61561 4.67747 4.74618 4.78085 4.78634 4.81229 4.82064 4.85975 4.86097 4.87078 4.94742 4.95330 5.20623 5.22644 5.33228 5.41423 5.56553 5.65410 5.65457 5.66286 6.29147 6.37033 6.82189 7.07166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.082 2.918 3 C -0.448 4.448 4 C -0.464 4.464 5 C -0.380 4.380 6 S -0.271 6.271 7 C -0.099 4.099 8 C 0.138 3.862 9 N -0.713 5.713 10 C 0.520 3.480 11 O -0.584 6.584 12 C -0.130 4.130 13 C 0.072 3.928 14 O -0.321 6.321 15 C 0.119 3.881 16 C -0.212 4.212 17 C -0.077 4.077 18 C -0.174 4.174 19 C -0.049 4.049 20 C -0.085 4.085 21 O -0.562 6.562 22 Si 0.984 3.016 23 H -0.270 1.270 24 H -0.258 1.258 25 H -0.252 1.252 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.421 0.579 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.138 0.862 48 H 0.150 0.850 49 H 0.132 0.868 50 H 0.098 0.902 51 H 0.399 0.601 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 4.403 2.381 6.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.273 2.727 3 C -0.557 4.557 4 C -0.571 4.571 5 C -0.572 4.572 6 S -0.046 6.046 7 C -0.247 4.247 8 C 0.013 3.987 9 N -0.367 5.367 10 C 0.307 3.693 11 O -0.464 6.464 12 C -0.169 4.169 13 C -0.003 4.003 14 O -0.235 6.235 15 C 0.073 3.927 16 C -0.231 4.231 17 C -0.095 4.095 18 C -0.191 4.191 19 C -0.049 4.049 20 C -0.195 4.195 21 O -0.372 6.372 22 Si 0.808 3.192 23 H -0.195 1.195 24 H -0.182 1.182 25 H -0.176 1.176 26 C -0.154 4.154 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.259 0.741 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.156 0.844 48 H 0.168 0.832 49 H 0.150 0.850 50 H 0.116 0.884 51 H 0.250 0.750 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.234 3.002 0.818 4.488 hybrid contribution 0.983 0.806 1.192 1.743 sum 4.217 3.809 2.010 6.027 Atomic orbital electron populations 1.26316 1.22046 1.04209 1.04413 0.77852 0.65491 0.66271 0.63065 1.26098 1.06676 1.17869 1.05087 1.26322 1.06464 1.08151 1.16138 1.28222 1.09780 0.97881 1.21315 1.87183 1.74746 1.15930 1.26744 1.23561 1.04662 0.98055 0.98441 1.20874 0.99280 0.92896 0.85616 1.45804 1.52803 1.16484 1.21573 1.20691 0.79469 0.81327 0.87815 1.90754 1.39090 1.58737 1.57779 1.21420 1.05060 0.95454 0.94996 1.22453 0.99369 0.95042 0.83474 1.85943 1.70452 1.28279 1.38789 1.19123 0.94718 0.84457 0.94364 1.21534 1.02815 0.97067 1.01695 1.21179 0.97841 0.94386 0.96094 1.21163 1.00614 1.01170 0.96192 1.19356 0.96586 0.93941 0.95033 1.24851 1.02069 1.06698 0.85862 1.86469 1.75495 1.57793 1.17402 0.85207 0.79671 0.73497 0.80828 1.19525 1.18198 1.17648 1.20358 1.04183 0.95710 0.95191 0.91071 0.91239 0.91795 0.90629 0.90709 0.90623 0.91856 0.91204 0.91039 0.87319 0.87487 0.87922 0.88013 0.91946 0.91838 0.74119 0.85318 0.85189 0.91583 0.91811 0.84392 0.83241 0.85022 0.88434 0.75038 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.94 8.65 113.37 0.98 1.92 16 2 Si 1.08 -6.50 12.30 68.60 0.84 -5.66 16 3 C -0.45 2.68 8.65 113.37 0.98 3.66 16 4 C -0.46 0.94 8.65 113.37 0.98 1.92 16 5 C -0.38 2.07 5.14 113.37 0.58 2.66 16 6 S -0.27 0.01 20.84 -56.49 -1.18 -1.17 16 7 C -0.10 0.44 6.05 71.98 0.44 0.88 16 8 C 0.14 -0.04 5.68 86.38 0.49 0.45 16 9 N -0.71 2.54 5.56 -463.06 -2.57 -0.03 16 10 C 0.52 0.89 7.83 87.66 0.69 1.58 16 11 O -0.58 -6.73 15.98 -3.03 -0.05 -6.77 16 12 C -0.13 0.46 6.07 29.85 0.18 0.64 16 13 C 0.07 0.18 4.03 71.98 0.29 0.47 16 14 O -0.32 -1.77 10.14 -92.45 -0.94 -2.71 16 15 C 0.12 0.86 6.69 22.51 0.15 1.01 16 16 C -0.21 -1.25 9.04 22.37 0.20 -1.05 16 17 C -0.08 -0.33 10.04 22.25 0.22 -0.11 16 18 C -0.17 -0.86 8.67 22.28 0.19 -0.66 16 19 C -0.05 -0.27 5.38 -19.88 -0.11 -0.37 16 20 C -0.09 -0.03 2.79 71.24 0.20 0.17 16 21 O -0.56 -0.69 12.81 -148.98 -1.91 -2.60 16 22 Si 0.98 -0.62 25.14 68.60 1.72 1.11 16 23 H -0.27 -0.81 7.04 99.48 0.70 -0.11 16 24 H -0.26 -0.16 7.11 99.48 0.71 0.54 16 25 H -0.25 0.39 7.11 99.48 0.71 1.09 16 26 C -0.14 -0.92 9.62 22.37 0.22 -0.71 16 27 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 29 H 0.06 0.04 7.96 -2.38 -0.02 0.02 16 30 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 33 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 34 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 35 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 36 H 0.11 -0.83 7.96 -2.39 -0.02 -0.84 16 37 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 38 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 41 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.42 -4.51 8.47 -92.71 -0.79 -5.30 16 43 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.07 0.24 7.63 -2.39 -0.02 0.23 16 46 H 0.06 0.26 7.61 -2.39 -0.02 0.25 16 47 H 0.14 0.55 6.30 -2.91 -0.02 0.53 16 48 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 49 H 0.13 0.26 4.86 -2.91 -0.01 0.25 16 50 H 0.10 -0.39 7.96 -2.39 -0.02 -0.40 16 51 H 0.40 -3.32 8.74 -74.06 -0.65 -3.97 16 52 H 0.14 0.70 8.06 -2.91 -0.02 0.68 16 Total: 0.00 -21.38 441.15 2.83 -18.55 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: 0.22 Total: -13.17 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.69 Total: 12.45 kcal Atomic # 7 Polarization: 2.54 SS G_CDS: -2.57 Total: -0.03 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -2.89 Total: -12.08 kcal Atomic # 14 Polarization: -7.11 SS G_CDS: 2.57 Total: -4.55 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.18 Total: -1.17 kcal Total: -21.38 2.83 -18.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.022 kcal (2) G-P(sol) polarization free energy of solvation -21.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds